Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0017634

Physical Location & Seq

Genomic Coordinates Forward (+)

33121173 .. 33122000

Gene Structure 828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g38830.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGAGAAGGCTATTAGCTGGATGCTGATTCTCTTAGTCATTGCATCCTGTTTATCCCAATTCTCAGAAGCAAAATCTGTGGAGACTTGCCACAAAAACACAGACTGCAAAAGAACTTCATGCGCCGGAAGCTTTGTTTTGTGTGTCAATGGCATATGCACTTGTGAAGTATCCGGCACTAGCCGAGACGAGTCTGCACCGGTAACTGACATCCCTGTGGTGTCGCCACCGTGTTCCAGCTCTAGTGACTGCCGCTTCGTCCTTTGCCAAACTGGACCGTCTGTTTGTATTGACGGCATATGCAGTTGCAAAGCATCCGACACTAGCCGGGACGAGTCTTCACCGGTAATTGACGCTGGTGTGGTCAAGCCATCGTGTTACAGCTCATATGAGTGCGAACAGAGGATCCGTTGCGAAGTTGGAATGGTTGCTACTTGTTATAATGGCAAATGCGTCTGCTTTCATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

157

Amino Acids

16.66

Weight (kDa)

4.99

Isoelectric Point (pI)

50.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017634)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g38820 FvH4_3g38830
prunus_persica	Prupe.1G297800_v2.0.a1 Prupe.1G297900_v2.0.a1 Prupe.5G016900_v2.0.a1
pyrus_communis	pycom16g04630
rosa_roxburghii	Rroxscaffold_7G00161770 Rroxscaffold_7G00190960
rosa_rugosa	Rorug06G0346900.1 Rorug06G0349400
rosa_samantha	Rh6BG439400 Rh6CG475700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	441
AciI	CCGC	1 cut(s)	253
AclWI	GGATC	2 cut(s)	400, 413
AgeI	ACCGGT	2 cut(s)	199, 343
AloI	GAACNNNNNNTCC	2 cut(s)	390, 422
AluBI	AGCT	4 cut(s)	18, 132, 240, 384
AluI	AGCT	4 cut(s)	18, 132, 240, 384
Alw26I	GTCTC	2 cut(s)	77, 180
AlwI	GGATC	2 cut(s)	400, 413
ArsI	GACNNNNNNTTYG	4 cut(s)	239, 267, 271, 299
AsiGI	ACCGGT	2 cut(s)	199, 343
AspLEI	GCGC	1 cut(s)	125
AspS9I	GGNCC	1 cut(s)	275
AsuC2I	CCSGG	1 cut(s)	329
AsuHPI	GGTGA	1 cut(s)	333
AvaII	GGWCC	1 cut(s)	275
BamHI	GGATCC	1 cut(s)	405
BbsI	GAAGAC	1 cut(s)	330
BccI	CCATC	1 cut(s)	379
BceAI	ACGGC	1 cut(s)	310
BciVI	GTATCC	1 cut(s)	181
BcnI	CCSGG	1 cut(s)	329
BcoDI	GTCTC	2 cut(s)	77, 180
BfaI	CTAG	3 cut(s)	180, 243, 324
BfuI	GTATCC	1 cut(s)	181
BisI	GCNGC	1 cut(s)	253
BlsI	GCNGC	1 cut(s)	254
Bme1390I	CCNGG	1 cut(s)	329
Bme18I	GGWCC	1 cut(s)	275
BmgT120I	GGNCC	1 cut(s)	275
BmiI	GGNNCC	1 cut(s)	407
BmrFI	CCNGG	1 cut(s)	329
BmsI	GCATC	3 cut(s)	12, 53, 323
BpiI	GAAGAC	1 cut(s)	330
BpuMI	CCSGG	1 cut(s)	329
BsaWI	WCCGGW	2 cut(s)	199, 343
Bse118I	RCCGGY	2 cut(s)	199, 343
Bse1I	ACTGG	1 cut(s)	277
Bse3DI	GCAATG	1 cut(s)	39
BseGI	GGATG	4 cut(s)	27, 44, 210, 314
BseMI	GCAATG	1 cut(s)	39
BseMII	CTCAG	1 cut(s)	78
BseNI	ACTGG	1 cut(s)	277
BsgI	GTGCAG	1 cut(s)	180
BshTI	ACCGGT	2 cut(s)	199, 343
BsiSI	CCGG	5 cut(s)	126, 174, 200, 328, 344
BslFI	GGGAC	1 cut(s)	344
BsmAI	GTCTC	2 cut(s)	77, 180
BsmBI	CGTCTC	1 cut(s)	180
BsmFI	GGGAC	1 cut(s)	344
Bsp143I	GATC	1 cut(s)	405
BspACI	CCGC	1 cut(s)	253
BspCNI	CTCAG	1 cut(s)	77
BspHI	TCATGA	1 cut(s)	463
BspLI	GGNNCC	1 cut(s)	407
BspPI	GGATC	2 cut(s)	400, 413
BsrDI	GCAATG	1 cut(s)	39
BsrFI	RCCGGY	2 cut(s)	199, 343
BsrI	ACTGG	1 cut(s)	277
BssAI	RCCGGY	2 cut(s)	199, 343
BssMI	GATC	1 cut(s)	405
Bst4CI	ACNGT	2 cut(s)	231, 279
BstDEI	CTNAG	2 cut(s)	34, 64
BstF5I	GGATG	4 cut(s)	27, 44, 210, 314
BstHHI	GCGC	1 cut(s)	125
BstKTI	GATC	1 cut(s)	408
BstMAI	GTCTC	2 cut(s)	77, 180
BstMBI	GATC	1 cut(s)	405
BstMWI	GCNNNNNNNGC	1 cut(s)	129
BstSCI	CCNGG	1 cut(s)	327
BstV2I	GAAGAC	1 cut(s)	330
BstX2I	RGATCY	1 cut(s)	405
BstYI	RGATCY	1 cut(s)	405
BsuI	GTATCC	1 cut(s)	181
BtsCI	GGATG	4 cut(s)	27, 44, 210, 314
CciI	TCATGA	1 cut(s)	463
CfoI	GCGC	1 cut(s)	125
Cfr10I	RCCGGY	2 cut(s)	199, 343
Cfr13I	GGNCC	1 cut(s)	275
CseI	GACGC	2 cut(s)	362, 442
CspAI	ACCGGT	2 cut(s)	199, 343
CspCI	CAANNNNNGTGG	2 cut(s)	60, 95
CviAII	CATG	2 cut(s)	120, 464
CviJI	RGCY	8 cut(s)	11, 18, 132, 183, 240, 327, 370, 384
CviKI_1	RGCY	8 cut(s)	11, 18, 132, 183, 240, 327, 370, 384
DdeI	CTNAG	2 cut(s)	34, 64
DpnI	GATC	1 cut(s)	407
DpnII	GATC	1 cut(s)	405
Eco47I	GGWCC	1 cut(s)	275
Esp3I	CGTCTC	1 cut(s)	180
FaeI	CATG	2 cut(s)	123, 467
FaiI	YATR	9 cut(s)	121, 155, 157, 299, 301, 388, 390, 441, 465
FaqI	GGGAC	1 cut(s)	344
FatI	CATG	2 cut(s)	119, 463
FauNDI	CATATG	3 cut(s)	155, 299, 388
Fnu4HI	GCNGC	1 cut(s)	253
FokI	GGATG	4 cut(s)	31, 34, 197, 301
Fsp4HI	GCNGC	1 cut(s)	253
FspBI	CTAG	3 cut(s)	180, 243, 324
GlaI	GCGC	1 cut(s)	124
GluI	GCNGC	1 cut(s)	253
HapII	CCGG	5 cut(s)	126, 174, 200, 328, 344
HgaI	GACGC	2 cut(s)	362, 442
HhaI	GCGC	1 cut(s)	125
Hin1II	CATG	2 cut(s)	123, 467
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
HindIII	AAGCTT	1 cut(s)	130
HinfI	GANTC	3 cut(s)	28, 191, 335
HpaII	CCGG	5 cut(s)	126, 174, 200, 328, 344
HphI	GGTGA	1 cut(s)	333
Hpy188I	TCNGA	2 cut(s)	67, 319
Hpy188III	TCNNGA	1 cut(s)	464
HpyCH4III	ACNGT	2 cut(s)	231, 279
HpyCH4V	TGCA	6 cut(s)	44, 108, 159, 197, 303, 309
HpyF10VI	GCNNNNNNNGC	1 cut(s)	129
HpyF3I	CTNAG	2 cut(s)	34, 64
Hsp92II	CATG	2 cut(s)	123, 467
HspAI	GCGC	1 cut(s)	123
Kzo9I	GATC	1 cut(s)	405
LweI	GCATC	3 cut(s)	12, 53, 323
MaeI	CTAG	3 cut(s)	180, 243, 324
MaeIII	GTNAC	3 cut(s)	202, 245, 377
MalI	GATC	1 cut(s)	407
MboI	GATC	1 cut(s)	405
MboII	GAAGA	1 cut(s)	330
MflI	RGATCY	1 cut(s)	405
MluCI	AATT	2 cut(s)	59, 348
MlyI	GAGTC	2 cut(s)	200, 344
MmeI	TCCRAC	2 cut(s)	342, 400
MnlI	CCTC	1 cut(s)	396
MseI	TTAA	1 cut(s)	469
MslI	CAYNNNNRTG	2 cut(s)	215, 391
MspI	CCGG	5 cut(s)	126, 174, 200, 328, 344
MspR9I	CCNGG	1 cut(s)	329
MwoI	GCNNNNNNNGC	1 cut(s)	129
NciI	CCSGG	1 cut(s)	329
NdeI	CATATG	3 cut(s)	155, 299, 388
NdeII	GATC	1 cut(s)	405
NlaIII	CATG	2 cut(s)	123, 467
NlaIV	GGNNCC	1 cut(s)	407
NmeAIII	GCCGAG	1 cut(s)	209
NmuCI	GTSAC	1 cut(s)	245
PagI	TCATGA	1 cut(s)	463
PfeI	GAWTC	1 cut(s)	28
PinAI	ACCGGT	2 cut(s)	199, 343
PkrI	GCNGC	1 cut(s)	254
PleI	GAGTC	2 cut(s)	199, 343
PpsI	GAGTC	2 cut(s)	199, 343
PsiI	TTATAA	1 cut(s)	441
PspN4I	GGNNCC	1 cut(s)	407
PspPI	GGNCC	1 cut(s)	275
PsuI	RGATCY	1 cut(s)	405
RseI	CAYNNNNRTG	2 cut(s)	215, 391
SaqAI	TTAA	1 cut(s)	469
SatI	GCNGC	1 cut(s)	253
Sau3AI	GATC	1 cut(s)	405
Sau96I	GGNCC	1 cut(s)	275
SchI	GAGTC	2 cut(s)	200, 344
ScrFI	CCNGG	1 cut(s)	329
SetI	ASST	4 cut(s)	20, 134, 242, 386
SfaNI	GCATC	3 cut(s)	12, 53, 323
SinI	GGWCC	1 cut(s)	275
SmiMI	CAYNNNNRTG	2 cut(s)	215, 391
Sse9I	AATT	2 cut(s)	59, 348
SsiI	CCGC	1 cut(s)	253
SspMI	CTAG	3 cut(s)	180, 243, 324
StyD4I	CCNGG	1 cut(s)	327
TaaI	ACNGT	2 cut(s)	231, 279
TasI	AATT	2 cut(s)	59, 348
TauI	GCSGC	1 cut(s)	255
TfiI	GAWTC	1 cut(s)	28
Tru1I	TTAA	1 cut(s)	469
Tru9I	TTAA	1 cut(s)	469
TseFI	GTSAC	1 cut(s)	245
Tsp45I	GTSAC	1 cut(s)	245
TspDTI	ATGAA	2 cut(s)	108, 452
TspGWI	ACGGA	1 cut(s)	398
VpaK11BI	GGWCC	1 cut(s)	275
XspI	CTAG	3 cut(s)	180, 243, 324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.