pycom16g04630

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0017634
Physical Location & Seq
Reverse (-)
2968175 .. 2968731
557 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g04630.2

Sequence Viewer

Length: 429 bp
ATGGAGAAGGCTGCGTTTAAGACGAGTATGATTAGTCGGGTCGTCTTCTTGGTCATTTGCGTGGCTGCAGGACCAGAAGCAGCTAAGGCTGTTCAACGATGCAATTCGAAGGCCGACTGCGATCCATGCCCCTCAAACTTTGTTCTTTGTATTAATCACGTCTGCACATGCGAAGTCGCAAATGCTATTCACGACGTCGCCGCCGACTGCCGGAGTCTCACCGACTGTAGAGACACTGCAGAAGACTGTCCAAAGGGTAGGGCTACGTGTCATAATGGGAAATGCTTGTGCTTTCTCCCTGAGTTCTCCCAGTCTGGCCTGCAAATTCAAAACGATCAATGTTCCGTTTTGACCGACTGCATAGGAGTTAAATGTGCTTCGGGAACTATCAAATGTGTCGATGGGGAATGCAAGTGTGTGGATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

15.06

Weight (kDa)

5.53

Isoelectric Point (pI)

29.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 198
AciI CCGC 1 cut(s) 201
AclWI GGATC 1 cut(s) 116
AcsI RAATTY 1 cut(s) 324
AcyI GRCGYC 1 cut(s) 195
AfiI CCNNNNNNNGG 1 cut(s) 210
AflIII ACRYGT 1 cut(s) 266
AgsI TTSAA 2 cut(s) 95, 329
AjiI CACGTC 1 cut(s) 160
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
Alw26I GTCTC 2 cut(s) 221, 225
AlwI GGATC 1 cut(s) 116
AoxI GGCC 2 cut(s) 111, 316
ApeKI GCWGC 3 cut(s) 11, 65, 80
ApoI RAATTY 1 cut(s) 324
AseI ATTAAT 1 cut(s) 153
AspS9I GGNCC 1 cut(s) 71
AsuHPI GGTGA 1 cut(s) 211
AsuII TTCGAA 1 cut(s) 107
AvaII GGWCC 1 cut(s) 71
BbsI GAAGAC 2 cut(s) 37, 249
BbvI GCAGC 2 cut(s) 52, 92
BccI CCATC 2 cut(s) 395, 416
BcoDI GTCTC 2 cut(s) 221, 225
BfmI CTRYAG 3 cut(s) 66, 226, 237
BisI GCNGC 4 cut(s) 12, 66, 81, 201
BlsI GCNGC 4 cut(s) 13, 67, 82, 202
Bme18I GGWCC 1 cut(s) 71
BmgBI CACGTC 1 cut(s) 160
BmgT120I GGNCC 1 cut(s) 71
BmrI ACTGGG 1 cut(s) 304
BmsI GCATC 1 cut(s) 89
BmuI ACTGGG 1 cut(s) 304
BpiI GAAGAC 2 cut(s) 37, 249
Bpu10I CCTNAGC 1 cut(s) 84
Bpu14I TTCGAA 1 cut(s) 107
BsaAI YACGTR 1 cut(s) 267
BsaHI GRCGYC 1 cut(s) 195
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse1I ACTGG 1 cut(s) 310
BseGI GGATG 1 cut(s) 427
BseLI CCNNNNNNNGG 1 cut(s) 210
BseMII CTCAG 1 cut(s) 291
BseNI ACTGG 1 cut(s) 310
BseXI GCAGC 2 cut(s) 52, 92
BsgI GTGCAG 1 cut(s) 148
BshFI GGCC 2 cut(s) 113, 318
BsiSI CCGG 1 cut(s) 211
BslI CCNNNNNNNGG 1 cut(s) 210
BsmAI GTCTC 2 cut(s) 221, 225
BsmI GAATGC 1 cut(s) 413
BsnI GGCC 2 cut(s) 113, 318
Bsp119I TTCGAA 1 cut(s) 107
Bsp143I GATC 2 cut(s) 121, 334
BspACI CCGC 1 cut(s) 201
BspANI GGCC 2 cut(s) 113, 318
BspCNI CTCAG 1 cut(s) 292
BspMAI CTGCAG 2 cut(s) 70, 241
BspPI GGATC 1 cut(s) 116
BspT104I TTCGAA 1 cut(s) 107
BsrI ACTGG 1 cut(s) 310
BssMI GATC 2 cut(s) 121, 334
BssNI GRCGYC 1 cut(s) 195
Bst4CI ACNGT 2 cut(s) 227, 248
BstACI GRCGYC 1 cut(s) 195
BstBAI YACGTR 1 cut(s) 267
BstBI TTCGAA 1 cut(s) 107
BstC8I GCNNGC 1 cut(s) 320
BstDEI CTNAG 2 cut(s) 84, 300
BstF5I GGATG 1 cut(s) 427
BstKTI GATC 2 cut(s) 124, 337
BstMAI GTCTC 2 cut(s) 221, 225
BstMBI GATC 2 cut(s) 121, 334
BstMWI GCNNNNNNNGC 2 cut(s) 86, 126
BstNSI RCATGY 1 cut(s) 171
BstSFI CTRYAG 3 cut(s) 66, 226, 237
BstV1I GCAGC 2 cut(s) 52, 92
BstV2I GAAGAC 2 cut(s) 37, 249
BsuRI GGCC 2 cut(s) 113, 318
BtrI CACGTC 1 cut(s) 160
BtsCI GGATG 1 cut(s) 427
BtsI GCAGTG 1 cut(s) 234
BtsIMutI CAGTG 1 cut(s) 234
Cac8I GCNNGC 1 cut(s) 320
Cfr13I GGNCC 1 cut(s) 71
CviAII CATG 2 cut(s) 126, 168
CviJI RGCY 7 cut(s) 11, 65, 83, 89, 113, 263, 318
CviKI_1 RGCY 7 cut(s) 11, 65, 83, 89, 113, 263, 318
DdeI CTNAG 2 cut(s) 84, 300
DpnI GATC 2 cut(s) 123, 336
DpnII GATC 2 cut(s) 121, 334
Eco47I GGWCC 1 cut(s) 71
FaeI CATG 2 cut(s) 129, 171
FaiI YATR 5 cut(s) 29, 127, 169, 273, 362
FatI CATG 2 cut(s) 125, 167
Fnu4HI GCNGC 4 cut(s) 12, 66, 81, 201
Fsp4HI GCNGC 4 cut(s) 12, 66, 81, 201
GluI GCNGC 4 cut(s) 12, 66, 81, 201
HaeIII GGCC 2 cut(s) 113, 318
HapII CCGG 1 cut(s) 211
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 2 cut(s) 129, 171
HinfI GANTC 1 cut(s) 214
HpaII CCGG 1 cut(s) 211
HphI GGTGA 1 cut(s) 211
Hpy188III TCNNGA 2 cut(s) 191, 381
Hpy99I CGWCG 2 cut(s) 197, 200
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 2 cut(s) 227, 248
HpyCH4IV ACGT 3 cut(s) 159, 195, 266
HpyCH4V TGCA 7 cut(s) 68, 102, 165, 239, 322, 360, 411
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 126
HpyF3I CTNAG 2 cut(s) 84, 300
HpySE526I ACGT 3 cut(s) 159, 195, 266
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 2 cut(s) 129, 171
Kzo9I GATC 2 cut(s) 121, 334
LpnPI CCDG 7 cut(s) 54, 87, 224, 300, 312, 323, 332
Lsp1109I GCAGC 2 cut(s) 52, 92
LweI GCATC 1 cut(s) 89
MaeII ACGT 3 cut(s) 159, 195, 266
MalI GATC 2 cut(s) 123, 336
MboI GATC 2 cut(s) 121, 334
MboII GAAGA 2 cut(s) 37, 254
MluCI AATT 2 cut(s) 103, 324
MlyI GAGTC 1 cut(s) 223
MnlI CCTC 1 cut(s) 142
MseI TTAA 4 cut(s) 18, 153, 369, 427
MslI CAYNNNNRTG 1 cut(s) 59
MspI CCGG 1 cut(s) 211
Mva1269I GAATGC 1 cut(s) 413
MwoI GCNNNNNNNGC 2 cut(s) 86, 126
NdeII GATC 2 cut(s) 121, 334
NlaIII CATG 2 cut(s) 129, 171
NspI RCATGY 1 cut(s) 171
NspV TTCGAA 1 cut(s) 107
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PctI GAATGC 1 cut(s) 413
PkrI GCNGC 4 cut(s) 13, 67, 82, 202
PleI GAGTC 1 cut(s) 222
PpsI GAGTC 1 cut(s) 222
Ppu21I YACGTR 1 cut(s) 267
PshBI ATTAAT 1 cut(s) 153
PspPI GGNCC 1 cut(s) 71
PstI CTGCAG 2 cut(s) 70, 241
RseI CAYNNNNRTG 1 cut(s) 59
SaqAI TTAA 4 cut(s) 18, 153, 369, 427
SatI GCNGC 4 cut(s) 12, 66, 81, 201
Sau3AI GATC 2 cut(s) 121, 334
Sau96I GGNCC 1 cut(s) 71
SchI GAGTC 1 cut(s) 223
SetI ASST 4 cut(s) 85, 162, 198, 269
SfaNI GCATC 1 cut(s) 89
SfcI CTRYAG 3 cut(s) 66, 226, 237
SfuI TTCGAA 1 cut(s) 107
SinI GGWCC 1 cut(s) 71
SmiMI CAYNNNNRTG 1 cut(s) 59
Sse9I AATT 2 cut(s) 103, 324
SsiI CCGC 1 cut(s) 201
TaaI ACNGT 2 cut(s) 227, 248
TaiI ACGT 3 cut(s) 162, 198, 269
TaqI TCGA 2 cut(s) 107, 399
TaqII GACCGA 1 cut(s) 368
TasI AATT 2 cut(s) 103, 324
TauI GCSGC 1 cut(s) 203
Tru1I TTAA 4 cut(s) 18, 153, 369, 427
Tru9I TTAA 4 cut(s) 18, 153, 369, 427
TscAI CASTG 1 cut(s) 241
TseI GCWGC 3 cut(s) 11, 65, 80
TspGWI ACGGA 1 cut(s) 334
TspRI CASTG 1 cut(s) 241
VpaK11BI GGWCC 1 cut(s) 71
VspI ATTAAT 1 cut(s) 153
XapI RAATTY 1 cut(s) 324
XceI RCATGY 1 cut(s) 171
ZraI GACGTC 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.