Prupe.5G016900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0017634
Physical Location & Seq
Forward (+)
1813372 .. 1815489
2118 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G016900.1

Sequence Viewer

Length: 489 bp
ATGAAGAAGGCTAATACTATTTGGGTTGTCCTCTTGGTCATTGCAACTAGTGTAACATTATTCTCAACAGGAGCAGAAGGGAAACAATGTTCTACTAACCAGGATTGTGACAAAACTTCATGTGTTTCAAGAACAGTGACAAAATCAAAATCAGACATGGAGAAGGCAACATCTAAGGCAGCTGTTTTCATCGTCTTCTTGGTCATTGCATCTTGTGTACCATTCTTCTCGGAAGCCATGGTGATTAAGCGAAGATGCTCTACTACCGCTGACTGCGAAACGTTTCCCTGTTACTCAAAAGAGTTTAAAAGGATCTGCATTAACAACTTGTGCGAATGCAAAATACCAAATAGTGATGGCTCCGCCCAGACAACTGAAAATGAAAACCCATGTTCCAGTCAGAAGGACTGCGACAAAATTGATTTCCTATGTCGATCGGGAACCCTCAAATGTGTTAATGGGAAATGCATATGCGTAGGCGTGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

17.66

Weight (kDa)

8.46

Isoelectric Point (pI)

25.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 267, 363
AclI AACGTT 1 cut(s) 281
AclWI GGATC 1 cut(s) 320
AfaI GTAC 1 cut(s) 219
AgsI TTSAA 1 cut(s) 129
AhlI ACTAGT 1 cut(s) 47
AjnI CCWGG 1 cut(s) 99
AloI GAACNNNNNNTCC 2 cut(s) 73, 105
AluBI AGCT 1 cut(s) 182
AluI AGCT 1 cut(s) 182
AlwI GGATC 1 cut(s) 320
ApeKI GCWGC 1 cut(s) 179
Asp700I GAANNNNTTC 1 cut(s) 282
AsuHPI GGTGA 1 cut(s) 253
BarI GAAGNNNNNNTAC 2 cut(s) 244, 276
BbsI GAAGAC 1 cut(s) 187
BbvI GCAGC 1 cut(s) 191
BccI CCATC 1 cut(s) 350
BciT130I CCWGG 1 cut(s) 101
BcuI ACTAGT 1 cut(s) 47
BfaI CTAG 1 cut(s) 48
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
Bme1390I CCNGG 1 cut(s) 101
BmiI GGNNCC 2 cut(s) 361, 442
BmrFI CCNGG 1 cut(s) 101
BmsI GCATC 2 cut(s) 218, 245
BpiI GAAGAC 1 cut(s) 187
BsaJI CCNNGG 1 cut(s) 237
Bse1I ACTGG 1 cut(s) 396
Bse3DI GCAATG 2 cut(s) 39, 204
BseBI CCWGG 1 cut(s) 101
BseDI CCNNGG 1 cut(s) 237
BseMI GCAATG 2 cut(s) 39, 204
BseNI ACTGG 1 cut(s) 396
BseXI GCAGC 1 cut(s) 191
Bsh1285I CGRYCG 1 cut(s) 437
BsiEI CGRYCG 1 cut(s) 437
BsmI GAATGC 1 cut(s) 341
Bsp143I GATC 2 cut(s) 312, 434
Bsp19I CCATGG 1 cut(s) 237
BspACI CCGC 2 cut(s) 267, 363
BspLI GGNNCC 2 cut(s) 361, 442
BspPI GGATC 1 cut(s) 320
BsrDI GCAATG 2 cut(s) 39, 204
BsrI ACTGG 1 cut(s) 396
BssECI CCNNGG 1 cut(s) 237
BssMI GATC 2 cut(s) 312, 434
BssT1I CCWWGG 1 cut(s) 237
Bst2UI CCWGG 1 cut(s) 101
Bst4CI ACNGT 1 cut(s) 136
BstDEI CTNAG 1 cut(s) 174
BstDSI CCRYGG 1 cut(s) 237
BstKTI GATC 2 cut(s) 315, 437
BstMBI GATC 2 cut(s) 312, 434
BstMCI CGRYCG 1 cut(s) 437
BstNI CCWGG 1 cut(s) 101
BstSCI CCNGG 1 cut(s) 99
BstV1I GCAGC 1 cut(s) 191
BstV2I GAAGAC 1 cut(s) 187
BstX2I RGATCY 1 cut(s) 312
BstYI RGATCY 1 cut(s) 312
BtgI CCRYGG 1 cut(s) 237
BtsIMutI CAGTG 1 cut(s) 141
Csp6I GTAC 1 cut(s) 218
CviAII CATG 4 cut(s) 120, 157, 238, 390
CviJI RGCY 4 cut(s) 11, 182, 236, 360
CviKI_1 RGCY 4 cut(s) 11, 182, 236, 360
CviQI GTAC 1 cut(s) 218
DdeI CTNAG 1 cut(s) 174
DpnI GATC 2 cut(s) 314, 436
DpnII GATC 2 cut(s) 312, 434
DraI TTTAAA 1 cut(s) 307
EciI GGCGGA 1 cut(s) 352
Eco130I CCWWGG 1 cut(s) 237
EcoRII CCWGG 1 cut(s) 99
EcoT14I CCWWGG 1 cut(s) 237
EcoT22I ATGCAT 1 cut(s) 470
ErhI CCWWGG 1 cut(s) 237
FaeI CATG 4 cut(s) 123, 160, 241, 393
FaiI YATR 7 cut(s) 121, 158, 239, 391, 430, 470, 472
FatI CATG 4 cut(s) 119, 156, 237, 389
FauNDI CATATG 1 cut(s) 470
Fnu4HI GCNGC 1 cut(s) 180
Fsp4HI GCNGC 1 cut(s) 180
FspBI CTAG 1 cut(s) 48
GluI GCNGC 1 cut(s) 180
Hin1II CATG 4 cut(s) 123, 160, 241, 393
HphI GGTGA 1 cut(s) 253
Hpy166II GTNNAC 1 cut(s) 218
Hpy188I TCNGA 3 cut(s) 154, 232, 402
Hpy188III TCNNGA 2 cut(s) 129, 438
Hpy8I GTNNAC 1 cut(s) 218
HpyAV CCTTC 3 cut(s) 71, 157, 397
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4IV ACGT 1 cut(s) 281
HpyCH4V TGCA 5 cut(s) 44, 209, 318, 339, 468
HpyF3I CTNAG 1 cut(s) 174
HpySE526I ACGT 1 cut(s) 281
Hsp92II CATG 4 cut(s) 123, 160, 241, 393
Kzo9I GATC 2 cut(s) 312, 434
LmnI GCTCC 2 cut(s) 71, 365
LpnPI CCDG 6 cut(s) 54, 86, 113, 301, 380, 409
Lsp1109I GCAGC 1 cut(s) 191
LweI GCATC 2 cut(s) 218, 245
MaeI CTAG 1 cut(s) 48
MaeII ACGT 1 cut(s) 281
MaeIII GTNAC 4 cut(s) 52, 107, 136, 290
MalI GATC 2 cut(s) 314, 436
MboI GATC 2 cut(s) 312, 434
MboII GAAGA 4 cut(s) 16, 187, 217, 264
MflI RGATCY 1 cut(s) 312
MluCI AATT 2 cut(s) 417, 484
MnlI CCTC 2 cut(s) 41, 455
Mph1103I ATGCAT 1 cut(s) 470
MroXI GAANNNNTTC 1 cut(s) 282
MseI TTAA 4 cut(s) 246, 306, 321, 456
MspA1I CMGCKG 2 cut(s) 182, 269
MspR9I CCNGG 1 cut(s) 101
Mva1269I GAATGC 1 cut(s) 341
MvaI CCWGG 1 cut(s) 101
NcoI CCATGG 1 cut(s) 237
NdeI CATATG 1 cut(s) 470
NdeII GATC 2 cut(s) 312, 434
NlaIII CATG 4 cut(s) 123, 160, 241, 393
NlaIV GGNNCC 2 cut(s) 361, 442
NmuCI GTSAC 2 cut(s) 107, 136
NsiI ATGCAT 1 cut(s) 470
PctI GAATGC 1 cut(s) 341
PdmI GAANNNNTTC 1 cut(s) 282
PkrI GCNGC 1 cut(s) 181
Ple19I CGATCG 1 cut(s) 437
Psp1406I AACGTT 1 cut(s) 281
Psp6I CCWGG 1 cut(s) 99
PspGI CCWGG 1 cut(s) 99
PspN4I GGNNCC 2 cut(s) 361, 442
PsuI RGATCY 1 cut(s) 312
PvuI CGATCG 1 cut(s) 437
PvuII CAGCTG 1 cut(s) 182
RsaI GTAC 1 cut(s) 219
RsaNI GTAC 1 cut(s) 218
SaqAI TTAA 4 cut(s) 246, 306, 321, 456
SatI GCNGC 1 cut(s) 180
Sau3AI GATC 2 cut(s) 312, 434
ScrFI CCNGG 1 cut(s) 101
SetI ASST 2 cut(s) 184, 284
SfaNI GCATC 2 cut(s) 218, 245
SpeI ACTAGT 1 cut(s) 47
Sse9I AATT 2 cut(s) 417, 484
SsiI CCGC 2 cut(s) 267, 363
SspMI CTAG 1 cut(s) 48
StyD4I CCNGG 1 cut(s) 99
StyI CCWWGG 1 cut(s) 237
TaaI ACNGT 1 cut(s) 136
TaiI ACGT 1 cut(s) 284
TaqI TCGA 1 cut(s) 433
TasI AATT 2 cut(s) 417, 484
Tru1I TTAA 4 cut(s) 246, 306, 321, 456
Tru9I TTAA 4 cut(s) 246, 306, 321, 456
TscAI CASTG 1 cut(s) 141
TseFI GTSAC 2 cut(s) 107, 136
TseI GCWGC 1 cut(s) 179
Tsp45I GTSAC 2 cut(s) 107, 136
TspDTI ATGAA 4 cut(s) 17, 108, 178, 396
TspRI CASTG 1 cut(s) 141
XmnI GAANNNNTTC 1 cut(s) 282
XspI CTAG 1 cut(s) 48
Zsp2I ATGCAT 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.