Rroxscaffold_7G00161770

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
4451185 .. 4451615
431 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00161770.1

Sequence Viewer

Length: 264 bp
ATGGAAATCAAGAAGGCTATCAGCTGGATGTTCATTCTCTTTGTCATTGCTTCTGGTAAGTTTCAATATCTAGCGCAATGTTTAATGTTAAAGTTTTCAGAAGCAAAAACTGTGGAGACTTGCCATAAAAACTCAGACTGCAAAAGAACTTCATGTGCTGGAAGCTTTGTTTTTGTTCCGGTGCTAGTGAATGCAAACACAAACACTTGCGTTCCACCATATCATCTTGATTGTGCTAATGGCTTATGCGATTGCGTCCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.67

Weight (kDa)

8.14

Isoelectric Point (pI)

36.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 65
AluBI AGCT 2 cut(s) 24, 165
AluI AGCT 2 cut(s) 24, 165
Alw26I GTCTC 1 cut(s) 110
AspLEI GCGC 1 cut(s) 76
BcoDI GTCTC 1 cut(s) 110
BfaI CTAG 2 cut(s) 71, 185
BsaWI WCCGGW 1 cut(s) 178
Bse3DI GCAATG 2 cut(s) 45, 83
BseGI GGATG 1 cut(s) 33
BseMI GCAATG 2 cut(s) 45, 83
BseMII CTCAG 1 cut(s) 147
BsiSI CCGG 1 cut(s) 179
BsmAI GTCTC 1 cut(s) 110
BsmI GAATGC 1 cut(s) 196
BspCNI CTCAG 1 cut(s) 146
BsrDI GCAATG 2 cut(s) 45, 83
Bst4CI ACNGT 1 cut(s) 112
BstDEI CTNAG 1 cut(s) 133
BstF5I GGATG 1 cut(s) 33
BstHHI GCGC 1 cut(s) 76
BstMAI GTCTC 1 cut(s) 110
BtsCI GGATG 1 cut(s) 33
CfoI GCGC 1 cut(s) 76
CseI GACGC 1 cut(s) 244
CspCI CAANNNNNGTGG 2 cut(s) 93, 128
CviAII CATG 1 cut(s) 153
CviJI RGCY 4 cut(s) 17, 24, 165, 243
CviKI_1 RGCY 4 cut(s) 17, 24, 165, 243
DdeI CTNAG 1 cut(s) 133
FaeI CATG 1 cut(s) 156
FaiI YATR 4 cut(s) 126, 154, 220, 247
FatI CATG 1 cut(s) 152
FokI GGATG 1 cut(s) 40
FspBI CTAG 2 cut(s) 71, 185
GlaI GCGC 1 cut(s) 75
HapII CCGG 1 cut(s) 179
HgaI GACGC 1 cut(s) 244
HhaI GCGC 1 cut(s) 76
Hin1II CATG 1 cut(s) 156
Hin6I GCGC 1 cut(s) 74
HinP1I GCGC 1 cut(s) 74
HindIII AAGCTT 1 cut(s) 163
HpaII CCGG 1 cut(s) 179
Hpy188I TCNGA 2 cut(s) 100, 136
Hpy188III TCNNGA 2 cut(s) 10, 227
HpyAV CCTTC 1 cut(s) 7
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4V TGCA 2 cut(s) 141, 194
HpyF3I CTNAG 1 cut(s) 133
Hsp92II CATG 1 cut(s) 156
HspAI GCGC 1 cut(s) 74
LpnPI CCDG 4 cut(s) 10, 39, 144, 192
MaeI CTAG 2 cut(s) 71, 185
MseI TTAA 2 cut(s) 83, 89
MspA1I CMGCKG 1 cut(s) 24
MspI CCGG 1 cut(s) 179
Mva1269I GAATGC 1 cut(s) 196
NlaIII CATG 1 cut(s) 156
PctI GAATGC 1 cut(s) 196
PvuII CAGCTG 1 cut(s) 24
SaqAI TTAA 2 cut(s) 83, 89
SetI ASST 2 cut(s) 26, 167
SspMI CTAG 2 cut(s) 71, 185
TaaI ACNGT 1 cut(s) 112
Tru1I TTAA 2 cut(s) 83, 89
Tru9I TTAA 2 cut(s) 83, 89
TspDTI ATGAA 2 cut(s) 22, 141
XspI CTAG 2 cut(s) 71, 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.