Prupe.1G297900_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
29382067 .. 29382691
625 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G297900.1

Sequence Viewer

Length: 333 bp
ATGGAGAAGGCAACATCTAAGGCAGCTATTTTCATCGTCTTCTTGGTCATTGCATCTTGTGTACCATTCTTCTCCGAAGCCATGGTGACTAAGCAAAGATGCTCTACTACCGCTGACTGCGAAACGTTTCCCTGTTACTCGAAAGAGTTTAAAAAGATTTGCATTGACAATTTTTGCGAATGCAAAGTACCGAATAGTGATGGCTCCGCCCAGACAAATAAAAATGAAGGACCGTGTTCCAGTCAGGAGGACTGCGACAAAATTGATTTCCTATGTAGATCGGGAACCCTCAAATGTGTTGATGGGAAATGCATATGCGTAGGCGTGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.02

Weight (kDa)

5.4

Isoelectric Point (pI)

25.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 111, 207
AclI AACGTT 1 cut(s) 125
AfaI GTAC 2 cut(s) 63, 189
AluBI AGCT 1 cut(s) 26
AluI AGCT 1 cut(s) 26
ApeKI GCWGC 1 cut(s) 23
Asp700I GAANNNNTTC 1 cut(s) 126
AspS9I GGNCC 1 cut(s) 230
AsuHPI GGTGA 1 cut(s) 97
AvaII GGWCC 1 cut(s) 230
BbsI GAAGAC 1 cut(s) 31
BbvI GCAGC 1 cut(s) 35
BccI CCATC 2 cut(s) 194, 296
BisI GCNGC 1 cut(s) 24
BlsI GCNGC 1 cut(s) 25
Bme18I GGWCC 1 cut(s) 230
BmgT120I GGNCC 1 cut(s) 230
BmiI GGNNCC 2 cut(s) 205, 286
BmsI GCATC 2 cut(s) 62, 89
BpiI GAAGAC 1 cut(s) 31
BsaJI CCNNGG 1 cut(s) 81
Bse1I ACTGG 1 cut(s) 240
Bse3DI GCAATG 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 81
BseMI GCAATG 1 cut(s) 48
BseNI ACTGG 1 cut(s) 240
BseXI GCAGC 1 cut(s) 35
BsmI GAATGC 1 cut(s) 185
Bsp143I GATC 1 cut(s) 278
Bsp19I CCATGG 1 cut(s) 81
BspACI CCGC 2 cut(s) 111, 207
BspLI GGNNCC 2 cut(s) 205, 286
BsrDI GCAATG 1 cut(s) 48
BsrI ACTGG 1 cut(s) 240
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 1 cut(s) 278
BssT1I CCWWGG 1 cut(s) 81
Bst4CI ACNGT 1 cut(s) 234
BstDEI CTNAG 2 cut(s) 18, 90
BstDSI CCRYGG 1 cut(s) 81
BstKTI GATC 1 cut(s) 281
BstMBI GATC 1 cut(s) 278
BstV1I GCAGC 1 cut(s) 35
BstV2I GAAGAC 1 cut(s) 31
BtgI CCRYGG 1 cut(s) 81
Cfr13I GGNCC 1 cut(s) 230
Csp6I GTAC 2 cut(s) 62, 188
CviAII CATG 1 cut(s) 82
CviJI RGCY 3 cut(s) 26, 80, 204
CviKI_1 RGCY 3 cut(s) 26, 80, 204
CviQI GTAC 2 cut(s) 62, 188
DdeI CTNAG 2 cut(s) 18, 90
DpnI GATC 1 cut(s) 280
DpnII GATC 1 cut(s) 278
DraI TTTAAA 1 cut(s) 151
EciI GGCGGA 1 cut(s) 196
Eco130I CCWWGG 1 cut(s) 81
Eco47I GGWCC 1 cut(s) 230
EcoT14I CCWWGG 1 cut(s) 81
EcoT22I ATGCAT 1 cut(s) 314
ErhI CCWWGG 1 cut(s) 81
FaeI CATG 1 cut(s) 85
FaiI YATR 4 cut(s) 83, 274, 314, 316
FatI CATG 1 cut(s) 81
FauNDI CATATG 1 cut(s) 314
Fnu4HI GCNGC 1 cut(s) 24
Fsp4HI GCNGC 1 cut(s) 24
GluI GCNGC 1 cut(s) 24
Hin1II CATG 1 cut(s) 85
HphI GGTGA 1 cut(s) 97
Hpy166II GTNNAC 1 cut(s) 62
Hpy188I TCNGA 1 cut(s) 76
Hpy188III TCNNGA 2 cut(s) 245, 282
Hpy8I GTNNAC 1 cut(s) 62
HpyAV CCTTC 1 cut(s) 221
HpyCH4III ACNGT 1 cut(s) 234
HpyCH4IV ACGT 1 cut(s) 125
HpyCH4V TGCA 4 cut(s) 53, 162, 183, 312
HpyF3I CTNAG 2 cut(s) 18, 90
HpySE526I ACGT 1 cut(s) 125
Hsp92II CATG 1 cut(s) 85
Kzo9I GATC 1 cut(s) 278
LmnI GCTCC 1 cut(s) 209
LpnPI CCDG 4 cut(s) 145, 224, 230, 253
Lsp1109I GCAGC 1 cut(s) 35
LweI GCATC 2 cut(s) 62, 89
MaeII ACGT 1 cut(s) 125
MaeIII GTNAC 2 cut(s) 85, 134
MalI GATC 1 cut(s) 280
MboI GATC 1 cut(s) 278
MboII GAAGA 2 cut(s) 31, 61
MluCI AATT 3 cut(s) 169, 261, 328
MnlI CCTC 2 cut(s) 241, 299
Mph1103I ATGCAT 1 cut(s) 314
MroXI GAANNNNTTC 1 cut(s) 126
MseI TTAA 1 cut(s) 150
MspA1I CMGCKG 1 cut(s) 113
Mva1269I GAATGC 1 cut(s) 185
NcoI CCATGG 1 cut(s) 81
NdeI CATATG 1 cut(s) 314
NdeII GATC 1 cut(s) 278
NlaIII CATG 1 cut(s) 85
NlaIV GGNNCC 2 cut(s) 205, 286
NmuCI GTSAC 1 cut(s) 85
NsiI ATGCAT 1 cut(s) 314
PctI GAATGC 1 cut(s) 185
PdmI GAANNNNTTC 1 cut(s) 126
PkrI GCNGC 1 cut(s) 25
Psp1406I AACGTT 1 cut(s) 125
PspN4I GGNNCC 2 cut(s) 205, 286
PspPI GGNCC 1 cut(s) 230
RsaI GTAC 2 cut(s) 63, 189
RsaNI GTAC 2 cut(s) 62, 188
SaqAI TTAA 1 cut(s) 150
SatI GCNGC 1 cut(s) 24
Sau3AI GATC 1 cut(s) 278
Sau96I GGNCC 1 cut(s) 230
SetI ASST 2 cut(s) 28, 128
SfaNI GCATC 2 cut(s) 62, 89
SinI GGWCC 1 cut(s) 230
Sse9I AATT 3 cut(s) 169, 261, 328
SsiI CCGC 2 cut(s) 111, 207
StyI CCWWGG 1 cut(s) 81
TaaI ACNGT 1 cut(s) 234
TaiI ACGT 1 cut(s) 128
TaqI TCGA 1 cut(s) 140
TasI AATT 3 cut(s) 169, 261, 328
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TseFI GTSAC 1 cut(s) 85
TseI GCWGC 1 cut(s) 23
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 2 cut(s) 22, 240
VpaK11BI GGWCC 1 cut(s) 230
XmnI GAANNNNTTC 1 cut(s) 126
Zsp2I ATGCAT 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.