FvH4_3g40240

expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0016546
Physical Location & Seq
Reverse (-)
34007143 .. 34009111
1969 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g40240.t1

Sequence Viewer

Length: 261 bp
ATGTGTCCCCTCCGATTCATCCTCGTCTTCCTCTCCGCCACTCTCGCCGGCTTCTTCCTCCTCAGAAACCTCAAATCCGAGCAGCCCCAATTGGCCCCCACCGACGATGACACCCACCTCGATAACCCCAAAAACTCCCCCAATCGGTTTTCCAAGGTTTGCTCAGCCATGGAATCTGGGTTCTGGACTTTTGTGGACATGGCCAGTGGAAGGTACCTATGGAGGCATTTGGTCACGTCTTCTGCAAAGTCAACGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.73

Weight (kDa)

7.83

Isoelectric Point (pI)

39.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016546)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58375
fragaria_vesca FvH4_3g40240
malus_domestica MD03G1054900.v1.1 MD11G1056300.v1.1
prunus_persica Prupe.6G043500_v2.0.a1
pyrus_communis pycom03g04360 pycom11g04660
rosa_chinensis RchiOBHm_Chr5g0025021 RchiOBHm_Chr5g0072461
rosa_laevigata RLG00000033631
rosa_multiflora Rmu_sc0041000.1_g000001
rosa_roxburghii Rroxscaffold_1G00008740
rosa_samantha Rh5AG474900
rosa_wichuraiana Rw5G044090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 213
AccB1I GGYRCC 1 cut(s) 213
AciI CCGC 1 cut(s) 36
AcoI YGGCCR 1 cut(s) 201
AfaI GTAC 1 cut(s) 215
AfiI CCNNNNNNNGG 2 cut(s) 144, 210
AjiI CACGTC 1 cut(s) 237
AloI GAACNNNNNNTCC 2 cut(s) 164, 196
AoxI GGCC 2 cut(s) 93, 201
ApeKI GCWGC 1 cut(s) 82
Asp718I GGTACC 1 cut(s) 213
AspS9I GGNCC 1 cut(s) 94
BalI TGGCCA 1 cut(s) 203
BanI GGYRCC 1 cut(s) 213
BbsI GAAGAC 2 cut(s) 19, 231
BbvI GCAGC 1 cut(s) 94
BisI GCNGC 1 cut(s) 83
BlpI GCTNAGC 1 cut(s) 163
BlsI GCNGC 1 cut(s) 84
BmgBI CACGTC 1 cut(s) 237
BmgT120I GGNCC 1 cut(s) 94
BmiI GGNNCC 2 cut(s) 96, 215
BpiI GAAGAC 2 cut(s) 19, 231
Bpu1102I GCTNAGC 1 cut(s) 163
BsaJI CCNNGG 2 cut(s) 153, 168
Bsc4I CCNNNNNNNGG 2 cut(s) 144, 210
Bse118I RCCGGY 1 cut(s) 47
Bse1I ACTGG 1 cut(s) 204
BseDI CCNNGG 2 cut(s) 153, 168
BseGI GGATG 1 cut(s) 18
BseLI CCNNNNNNNGG 2 cut(s) 144, 210
BseMII CTCAG 2 cut(s) 76, 177
BseNI ACTGG 1 cut(s) 204
BseRI GAGGAG 1 cut(s) 50
BseXI GCAGC 1 cut(s) 94
BshFI GGCC 2 cut(s) 95, 203
BshNI GGYRCC 1 cut(s) 213
BsiSI CCGG 1 cut(s) 48
BslI CCNNNNNNNGG 2 cut(s) 144, 210
BsnI GGCC 2 cut(s) 95, 203
Bsp1720I GCTNAGC 1 cut(s) 163
Bsp19I CCATGG 1 cut(s) 168
BspACI CCGC 1 cut(s) 36
BspANI GGCC 2 cut(s) 95, 203
BspCNI CTCAG 2 cut(s) 75, 176
BspLI GGNNCC 2 cut(s) 96, 215
BspT107I GGYRCC 1 cut(s) 213
BsrFI RCCGGY 1 cut(s) 47
BsrI ACTGG 1 cut(s) 204
BssAI RCCGGY 1 cut(s) 47
BssECI CCNNGG 2 cut(s) 153, 168
BssT1I CCWWGG 2 cut(s) 153, 168
BstC8I GCNNGC 1 cut(s) 49
BstDEI CTNAG 2 cut(s) 62, 163
BstDSI CCRYGG 1 cut(s) 168
BstF5I GGATG 1 cut(s) 18
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstV1I GCAGC 1 cut(s) 94
BstV2I GAAGAC 2 cut(s) 19, 231
BsuRI GGCC 2 cut(s) 95, 203
BtgI CCRYGG 1 cut(s) 168
BtrI CACGTC 1 cut(s) 237
BtsCI GGATG 1 cut(s) 18
BtsIMutI CAGTG 1 cut(s) 211
Cac8I GCNNGC 1 cut(s) 49
Cfr10I RCCGGY 1 cut(s) 47
Cfr13I GGNCC 1 cut(s) 94
Csp6I GTAC 1 cut(s) 214
CviAII CATG 2 cut(s) 169, 199
CviJI RGCY 5 cut(s) 51, 85, 95, 167, 203
CviKI_1 RGCY 5 cut(s) 51, 85, 95, 167, 203
CviQI GTAC 1 cut(s) 214
DdeI CTNAG 2 cut(s) 62, 163
EaeI YGGCCR 1 cut(s) 201
EciI GGCGGA 1 cut(s) 25
Eco130I CCWWGG 2 cut(s) 153, 168
EcoT14I CCWWGG 2 cut(s) 153, 168
ErhI CCWWGG 2 cut(s) 153, 168
FaeI CATG 2 cut(s) 172, 202
FaiI YATR 3 cut(s) 170, 200, 220
FatI CATG 2 cut(s) 168, 198
Fnu4HI GCNGC 1 cut(s) 83
FokI GGATG 1 cut(s) 5
Fsp4HI GCNGC 1 cut(s) 83
GluI GCNGC 1 cut(s) 83
HaeIII GGCC 2 cut(s) 95, 203
HapII CCGG 1 cut(s) 48
Hin1II CATG 2 cut(s) 172, 202
HincII GTYRAC 1 cut(s) 252
HindII GTYRAC 1 cut(s) 252
HinfI GANTC 2 cut(s) 15, 173
HpaII CCGG 1 cut(s) 48
Hpy166II GTNNAC 2 cut(s) 196, 252
Hpy188I TCNGA 3 cut(s) 14, 65, 79
Hpy188III TCNNGA 1 cut(s) 184
Hpy8I GTNNAC 2 cut(s) 196, 252
Hpy99I CGWCG 1 cut(s) 107
HpyAV CCTTC 1 cut(s) 204
HpyCH4IV ACGT 1 cut(s) 236
HpyCH4V TGCA 1 cut(s) 245
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
HpyF3I CTNAG 2 cut(s) 62, 163
HpySE526I ACGT 1 cut(s) 236
Hsp92II CATG 2 cut(s) 172, 202
KpnI GGTACC 1 cut(s) 217
KroI GCCGGC 1 cut(s) 47
KroNI GCCGGC 1 cut(s) 49
LpnPI CCDG 4 cut(s) 61, 162, 169, 217
Lsp1109I GCAGC 1 cut(s) 94
MaeII ACGT 1 cut(s) 236
MaeIII GTNAC 1 cut(s) 232
MboII GAAGA 3 cut(s) 19, 46, 231
MfeI CAATTG 1 cut(s) 89
MlsI TGGCCA 1 cut(s) 203
MluCI AATT 1 cut(s) 89
MluNI TGGCCA 1 cut(s) 203
MnlI CCTC 8 cut(s) 20, 32, 41, 68, 71, 80, 128, 216
Mox20I TGGCCA 1 cut(s) 203
MroNI GCCGGC 1 cut(s) 47
MscI TGGCCA 1 cut(s) 203
Msp20I TGGCCA 1 cut(s) 203
MspI CCGG 1 cut(s) 48
MunI CAATTG 1 cut(s) 89
MwoI GCNNNNNNNGC 1 cut(s) 44
NaeI GCCGGC 1 cut(s) 49
NcoI CCATGG 1 cut(s) 168
NgoMIV GCCGGC 1 cut(s) 47
NlaIII CATG 2 cut(s) 172, 202
NlaIV GGNNCC 2 cut(s) 96, 215
NmuCI GTSAC 1 cut(s) 232
PdiI GCCGGC 1 cut(s) 49
PfeI GAWTC 2 cut(s) 15, 173
PkrI GCNGC 1 cut(s) 84
PspN4I GGNNCC 2 cut(s) 96, 215
PspPI GGNCC 1 cut(s) 94
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
SatI GCNGC 1 cut(s) 83
Sau96I GGNCC 1 cut(s) 94
SetI ASST 6 cut(s) 72, 120, 159, 215, 219, 239
Sse9I AATT 1 cut(s) 89
SsiI CCGC 1 cut(s) 36
StyI CCWWGG 2 cut(s) 153, 168
TaiI ACGT 1 cut(s) 239
TaqI TCGA 1 cut(s) 120
TasI AATT 1 cut(s) 89
TfiI GAWTC 2 cut(s) 15, 173
TscAI CASTG 1 cut(s) 211
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 1 cut(s) 82
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 1 cut(s) 7
TspRI CASTG 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.