MD11G1056300.v1.1

expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0016546
Physical Location & Seq
Forward (+)
4795758 .. 4797304
1547 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1056300.v1.1.491

Sequence Viewer

Length: 273 bp
ATGTGTCCCCTGCGGCTGATTCTCATATTCCTCTCCGCCACCCTCGCCGGCTTCTTTGTCCTCAGAAACCTCAAATCCGACGGCCCCAAATTGGAAATGCTGCAAGATGAACAAGAAACCTACCAACTCGAAAACCCCAACAAATCTCCCCACCAATTCTCCAAGGTTCGCTCCGCCGTGGAATCGGGGTTCTGGACCGTCGTGGACATGGCCAGCGGACGCTACCTCTGGAGGCATTTGGCGTCGTCGACGGCGTCGAAGCAGTCGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.18

Weight (kDa)

8.93

Isoelectric Point (pI)

52.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016546)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58375
fragaria_vesca FvH4_3g40240
malus_domestica MD03G1054900.v1.1 MD11G1056300.v1.1
prunus_persica Prupe.6G043500_v2.0.a1
pyrus_communis pycom03g04360 pycom11g04660
rosa_chinensis RchiOBHm_Chr5g0025021 RchiOBHm_Chr5g0072461
rosa_laevigata RLG00000033631
rosa_multiflora Rmu_sc0041000.1_g000001
rosa_roxburghii Rroxscaffold_1G00008740
rosa_samantha Rh5AG474900
rosa_wichuraiana Rw5G044090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 248
AciI CCGC 4 cut(s) 13, 36, 174, 216
AcoI YGGCCR 1 cut(s) 210
AcyI GRCGYC 2 cut(s) 242, 254
AfiI CCNNNNNNNGG 1 cut(s) 91
AloI GAACNNNNNNTCC 2 cut(s) 173, 205
AoxI GGCC 2 cut(s) 82, 210
ApeKI GCWGC 1 cut(s) 100
AspS9I GGNCC 2 cut(s) 83, 195
AvaII GGWCC 1 cut(s) 195
BalI TGGCCA 1 cut(s) 212
BbvI GCAGC 1 cut(s) 87
BceAI ACGGC 3 cut(s) 97, 161, 267
BisI GCNGC 2 cut(s) 14, 101
BlsI GCNGC 2 cut(s) 15, 102
Bme18I GGWCC 1 cut(s) 195
BmgT120I GGNCC 2 cut(s) 83, 195
BmiI GGNNCC 1 cut(s) 85
BpmI CTGGAG 1 cut(s) 250
BsaHI GRCGYC 2 cut(s) 242, 254
BsaJI CCNNGG 2 cut(s) 162, 177
BsaXI ACNNNNNCTCC 2 cut(s) 143, 173
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse118I RCCGGY 1 cut(s) 47
BseDI CCNNGG 2 cut(s) 162, 177
BseLI CCNNNNNNNGG 1 cut(s) 91
BseMII CTCAG 1 cut(s) 76
BseXI GCAGC 1 cut(s) 87
BshFI GGCC 2 cut(s) 84, 212
BsiSI CCGG 1 cut(s) 48
BslI CCNNNNNNNGG 1 cut(s) 91
BsnI GGCC 2 cut(s) 84, 212
BspACI CCGC 4 cut(s) 13, 36, 174, 216
BspANI GGCC 2 cut(s) 84, 212
BspCNI CTCAG 1 cut(s) 75
BspLI GGNNCC 1 cut(s) 85
BsrFI RCCGGY 1 cut(s) 47
BssAI RCCGGY 1 cut(s) 47
BssECI CCNNGG 2 cut(s) 162, 177
BssNI GRCGYC 2 cut(s) 242, 254
BssT1I CCWWGG 1 cut(s) 162
Bst4CI ACNGT 1 cut(s) 199
BstACI GRCGYC 2 cut(s) 242, 254
BstC8I GCNNGC 2 cut(s) 49, 214
BstDEI CTNAG 1 cut(s) 62
BstDSI CCRYGG 1 cut(s) 177
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstV1I GCAGC 1 cut(s) 87
BsuRI GGCC 2 cut(s) 84, 212
BtgI CCRYGG 1 cut(s) 177
Cac8I GCNNGC 2 cut(s) 49, 214
Cfr10I RCCGGY 1 cut(s) 47
Cfr13I GGNCC 2 cut(s) 83, 195
CseI GACGC 3 cut(s) 228, 231, 243
CviAII CATG 1 cut(s) 208
CviJI RGCY 5 cut(s) 16, 51, 84, 212, 269
CviKI_1 RGCY 5 cut(s) 16, 51, 84, 212, 269
DdeI CTNAG 1 cut(s) 62
EaeI YGGCCR 1 cut(s) 210
EciI GGCGGA 2 cut(s) 25, 163
Eco130I CCWWGG 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 195
EcoT14I CCWWGG 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 1 cut(s) 211
FaiI YATR 2 cut(s) 26, 209
FatI CATG 1 cut(s) 207
FblI GTMKAC 1 cut(s) 248
Fnu4HI GCNGC 2 cut(s) 14, 101
Fsp4HI GCNGC 2 cut(s) 14, 101
GluI GCNGC 2 cut(s) 14, 101
GsuI CTGGAG 1 cut(s) 250
HaeIII GGCC 2 cut(s) 84, 212
HapII CCGG 1 cut(s) 48
HgaI GACGC 3 cut(s) 228, 231, 243
Hin1I GRCGYC 2 cut(s) 242, 254
Hin1II CATG 1 cut(s) 211
HincII GTYRAC 1 cut(s) 249
HindII GTYRAC 1 cut(s) 249
HinfI GANTC 2 cut(s) 19, 182
HpaII CCGG 1 cut(s) 48
Hpy166II GTNNAC 2 cut(s) 205, 249
Hpy188I TCNGA 2 cut(s) 65, 79
Hpy188III TCNNGA 2 cut(s) 193, 229
Hpy8I GTNNAC 2 cut(s) 205, 249
Hpy99I CGWCG 6 cut(s) 83, 203, 247, 250, 253, 259
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4V TGCA 1 cut(s) 103
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
HpyF3I CTNAG 1 cut(s) 62
Hsp92I GRCGYC 2 cut(s) 242, 254
Hsp92II CATG 1 cut(s) 211
KroI GCCGGC 1 cut(s) 47
KroNI GCCGGC 1 cut(s) 49
LmnI GCTCC 1 cut(s) 176
LpnPI CCDG 5 cut(s) 23, 61, 178, 214, 226
Lsp1109I GCAGC 1 cut(s) 87
MlsI TGGCCA 1 cut(s) 212
MluCI AATT 2 cut(s) 89, 155
MluNI TGGCCA 1 cut(s) 212
MmeI TCCRAC 1 cut(s) 102
MnlI CCTC 6 cut(s) 41, 53, 71, 80, 225, 236
Mox20I TGGCCA 1 cut(s) 212
MroNI GCCGGC 1 cut(s) 47
MscI TGGCCA 1 cut(s) 212
Msp20I TGGCCA 1 cut(s) 212
MspA1I CMGCKG 1 cut(s) 216
MspI CCGG 1 cut(s) 48
MwoI GCNNNNNNNGC 1 cut(s) 44
NaeI GCCGGC 1 cut(s) 49
NgoMIV GCCGGC 1 cut(s) 47
NlaIII CATG 1 cut(s) 211
NlaIV GGNNCC 1 cut(s) 85
PcsI WCGNNNNNNNCGW 2 cut(s) 251, 254
PdiI GCCGGC 1 cut(s) 49
PfeI GAWTC 2 cut(s) 19, 182
PflFI GACNNNGTC 1 cut(s) 253
PkrI GCNGC 2 cut(s) 15, 102
PspN4I GGNNCC 1 cut(s) 85
PspPI GGNCC 2 cut(s) 83, 195
PsyI GACNNNGTC 1 cut(s) 253
SalI GTCGAC 1 cut(s) 247
SatI GCNGC 2 cut(s) 14, 101
Sau96I GGNCC 2 cut(s) 83, 195
SetI ASST 4 cut(s) 72, 122, 168, 228
SgrDI CGTCGACG 1 cut(s) 247
SinI GGWCC 1 cut(s) 195
Sse9I AATT 2 cut(s) 89, 155
SsiI CCGC 4 cut(s) 13, 36, 174, 216
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 1 cut(s) 199
TaqI TCGA 3 cut(s) 129, 248, 257
TasI AATT 2 cut(s) 89, 155
TauI GCSGC 1 cut(s) 16
TfiI GAWTC 2 cut(s) 19, 182
TseI GCWGC 1 cut(s) 100
TspDTI ATGAA 1 cut(s) 123
Tth111I GACNNNGTC 1 cut(s) 253
VpaK11BI GGWCC 1 cut(s) 195
XmiI GTMKAC 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.