MD03G1054900.v1.1

expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0016546
Physical Location & Seq
Forward (+)
4373504 .. 4374484
981 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1054900.v1.1.491

Sequence Viewer

Length: 273 bp
ATGTGTCCCCTCCGACTGGTTCTGATATTCCTCTCCGCCACCCTCGCCGGCTTCTTTGTCCTCAGAAACCTCAAATCCGACGACCCCAAATTGGAGCCGCCGCAAGATGACCAAGAAACCCACCATTTCCAAAACCCCAACAAATCTCCCGACCGGTTCTCCAAGGTTCGCACCGCCGTGGAATTCGGGTTCTGGACCGTCGTGGACATGGCCAGCGGACGCTACCTCTGGAGGCATTTGTCGTCGCCGGCGGCCGCGAAGCTGTCGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.26

Weight (kDa)

7.95

Isoelectric Point (pI)

40.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016546)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58375
fragaria_vesca FvH4_3g40240
malus_domestica MD03G1054900.v1.1 MD11G1056300.v1.1
prunus_persica Prupe.6G043500_v2.0.a1
pyrus_communis pycom03g04360 pycom11g04660
rosa_chinensis RchiOBHm_Chr5g0025021 RchiOBHm_Chr5g0072461
rosa_laevigata RLG00000033631
rosa_multiflora Rmu_sc0041000.1_g000001
rosa_roxburghii Rroxscaffold_1G00008740
rosa_samantha Rh5AG474900
rosa_wichuraiana Rw5G044090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 257
AciI CCGC 7 cut(s) 36, 98, 101, 174, 216, 251, 255
AcoI YGGCCR 2 cut(s) 210, 252
AcsI RAATTY 1 cut(s) 182
AfiI CCNNNNNNNGG 2 cut(s) 16, 91
AgeI ACCGGT 1 cut(s) 153
AleI CACNNNNGTG 1 cut(s) 176
AloI GAACNNNNNNTCC 2 cut(s) 173, 205
AluBI AGCT 1 cut(s) 262
AluI AGCT 1 cut(s) 262
AoxI GGCC 2 cut(s) 210, 252
ApoI RAATTY 1 cut(s) 182
AsiGI ACCGGT 1 cut(s) 153
AspS9I GGNCC 1 cut(s) 195
AvaII GGWCC 1 cut(s) 195
BalI TGGCCA 1 cut(s) 212
BceAI ACGGC 1 cut(s) 161
BisI GCNGC 4 cut(s) 98, 101, 252, 255
BlsI GCNGC 4 cut(s) 99, 102, 253, 256
Bme18I GGWCC 1 cut(s) 195
BmgT120I GGNCC 1 cut(s) 195
BmiI GGNNCC 1 cut(s) 96
BpmI CTGGAG 1 cut(s) 250
BsaJI CCNNGG 2 cut(s) 162, 177
BsaWI WCCGGW 1 cut(s) 153
BsaXI ACNNNNNCTCC 2 cut(s) 143, 173
Bsc4I CCNNNNNNNGG 2 cut(s) 16, 91
Bse118I RCCGGY 3 cut(s) 47, 153, 247
Bse1I ACTGG 1 cut(s) 21
BseDI CCNNGG 2 cut(s) 162, 177
BseLI CCNNNNNNNGG 2 cut(s) 16, 91
BseMII CTCAG 1 cut(s) 76
BseNI ACTGG 1 cut(s) 21
BseX3I CGGCCG 1 cut(s) 252
Bsh1236I CGCG 1 cut(s) 257
Bsh1285I CGRYCG 2 cut(s) 154, 255
BshFI GGCC 2 cut(s) 212, 254
BshTI ACCGGT 1 cut(s) 153
BsiEI CGRYCG 2 cut(s) 154, 255
BsiSI CCGG 3 cut(s) 48, 154, 248
BslI CCNNNNNNNGG 2 cut(s) 16, 91
BsnI GGCC 2 cut(s) 212, 254
BspACI CCGC 7 cut(s) 36, 98, 101, 174, 216, 251, 255
BspANI GGCC 2 cut(s) 212, 254
BspCNI CTCAG 1 cut(s) 75
BspFNI CGCG 1 cut(s) 257
BspLI GGNNCC 1 cut(s) 96
BsrFI RCCGGY 3 cut(s) 47, 153, 247
BsrI ACTGG 1 cut(s) 21
BssAI RCCGGY 3 cut(s) 47, 153, 247
BssECI CCNNGG 2 cut(s) 162, 177
BssT1I CCWWGG 1 cut(s) 162
Bst4CI ACNGT 1 cut(s) 199
BstC8I GCNNGC 3 cut(s) 49, 214, 249
BstDEI CTNAG 1 cut(s) 62
BstDSI CCRYGG 1 cut(s) 177
BstFNI CGCG 1 cut(s) 257
BstMCI CGRYCG 2 cut(s) 154, 255
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstUI CGCG 1 cut(s) 257
BstZI CGGCCG 1 cut(s) 252
BsuRI GGCC 2 cut(s) 212, 254
BtgI CCRYGG 1 cut(s) 177
Cac8I GCNNGC 3 cut(s) 49, 214, 249
CciNI GCGGCCGC 1 cut(s) 252
Cfr10I RCCGGY 3 cut(s) 47, 153, 247
Cfr13I GGNCC 1 cut(s) 195
CseI GACGC 1 cut(s) 228
CspAI ACCGGT 1 cut(s) 153
CviAII CATG 1 cut(s) 208
CviJI RGCY 5 cut(s) 51, 97, 212, 254, 262
CviKI_1 RGCY 5 cut(s) 51, 97, 212, 254, 262
DdeI CTNAG 1 cut(s) 62
EaeI YGGCCR 2 cut(s) 210, 252
EagI CGGCCG 1 cut(s) 252
EciI GGCGGA 1 cut(s) 25
EclXI CGGCCG 1 cut(s) 252
Eco130I CCWWGG 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 195
Eco52I CGGCCG 1 cut(s) 252
EcoRI GAATTC 1 cut(s) 182
EcoT14I CCWWGG 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 1 cut(s) 211
FaiI YATR 1 cut(s) 209
FatI CATG 1 cut(s) 207
Fnu4HI GCNGC 4 cut(s) 98, 101, 252, 255
Fsp4HI GCNGC 4 cut(s) 98, 101, 252, 255
GluI GCNGC 4 cut(s) 98, 101, 252, 255
GsuI CTGGAG 1 cut(s) 250
HaeIII GGCC 2 cut(s) 212, 254
HapII CCGG 3 cut(s) 48, 154, 248
HgaI GACGC 1 cut(s) 228
Hin1II CATG 1 cut(s) 211
HpaII CCGG 3 cut(s) 48, 154, 248
Hpy166II GTNNAC 1 cut(s) 205
Hpy188I TCNGA 5 cut(s) 14, 24, 65, 79, 268
Hpy188III TCNNGA 3 cut(s) 149, 193, 229
Hpy8I GTNNAC 1 cut(s) 205
Hpy99I CGWCG 3 cut(s) 83, 203, 247
HpyCH4III ACNGT 1 cut(s) 199
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
HpyF3I CTNAG 1 cut(s) 62
Hsp92II CATG 1 cut(s) 211
KroI GCCGGC 2 cut(s) 47, 247
KroNI GCCGGC 2 cut(s) 49, 249
LmnI GCTCC 1 cut(s) 94
LpnPI CCDG 7 cut(s) 2, 61, 167, 178, 214, 226, 261
MlsI TGGCCA 1 cut(s) 212
MluCI AATT 2 cut(s) 89, 182
MluNI TGGCCA 1 cut(s) 212
MmeI TCCRAC 3 cut(s) 37, 102, 246
MnlI CCTC 7 cut(s) 20, 41, 53, 71, 80, 225, 236
Mox20I TGGCCA 1 cut(s) 212
MreI CGCCGGCG 1 cut(s) 247
MroNI GCCGGC 2 cut(s) 47, 247
MscI TGGCCA 1 cut(s) 212
MslI CAYNNNNRTG 1 cut(s) 176
Msp20I TGGCCA 1 cut(s) 212
MspA1I CMGCKG 1 cut(s) 216
MspI CCGG 3 cut(s) 48, 154, 248
MvnI CGCG 1 cut(s) 257
MwoI GCNNNNNNNGC 1 cut(s) 44
NaeI GCCGGC 2 cut(s) 49, 249
NgoMIV GCCGGC 2 cut(s) 47, 247
NlaIII CATG 1 cut(s) 211
NlaIV GGNNCC 1 cut(s) 96
NotI GCGGCCGC 1 cut(s) 252
OliI CACNNNNGTG 1 cut(s) 176
PdiI GCCGGC 2 cut(s) 49, 249
PinAI ACCGGT 1 cut(s) 153
PkrI GCNGC 4 cut(s) 99, 102, 253, 256
PspN4I GGNNCC 1 cut(s) 96
PspPI GGNCC 1 cut(s) 195
RseI CAYNNNNRTG 1 cut(s) 176
SatI GCNGC 4 cut(s) 98, 101, 252, 255
Sau96I GGNCC 1 cut(s) 195
SetI ASST 4 cut(s) 72, 168, 228, 264
SgrAI CRCCGGYG 1 cut(s) 247
SinI GGWCC 1 cut(s) 195
SmiMI CAYNNNNRTG 1 cut(s) 176
Sse9I AATT 2 cut(s) 89, 182
SsiI CCGC 7 cut(s) 36, 98, 101, 174, 216, 251, 255
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 1 cut(s) 199
TasI AATT 2 cut(s) 89, 182
TauI GCSGC 4 cut(s) 100, 103, 254, 257
VpaK11BI GGWCC 1 cut(s) 195
XapI RAATTY 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.