Rh5AG474900

expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0016546
Physical Location & Seq
Reverse (-)
81483354 .. 81486510
3157 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG474900.1

Sequence Viewer

Length: 264 bp
ATGTGCCCTCTCAGATTCATCCTCGTCTTCCTCTCCGCCACTCTCGCCGGCTTCTTCCTCCTCAGAAACCTCAAATCCGAGCCCCCCCAATTGACCCCCACCGACGATGACACCCACCTCGAGATTAACCCCAAAAACTCCCCCAATCGATTTTCCAAGGTTTGCTCAGCCATGGAATCTGGGTTCTGGACCTTTGTGGACATGGCCAGTGGACGATACCTATGGAGGCATTTGGTCACGTCTTCCTCAAAGTCAACGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.87

Weight (kDa)

7.83

Isoelectric Point (pI)

41.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016546)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58375
fragaria_vesca FvH4_3g40240
malus_domestica MD03G1054900.v1.1 MD11G1056300.v1.1
prunus_persica Prupe.6G043500_v2.0.a1
pyrus_communis pycom03g04360 pycom11g04660
rosa_chinensis RchiOBHm_Chr5g0025021 RchiOBHm_Chr5g0072461
rosa_laevigata RLG00000033631
rosa_multiflora Rmu_sc0041000.1_g000001
rosa_roxburghii Rroxscaffold_1G00008740
rosa_samantha Rh5AG474900
rosa_wichuraiana Rw5G044090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 36
AcoI YGGCCR 1 cut(s) 204
AjiI CACGTC 1 cut(s) 240
AloI GAACNNNNNNTCC 2 cut(s) 167, 199
Ama87I CYCGRG 1 cut(s) 119
AoxI GGCC 1 cut(s) 204
AspS9I GGNCC 1 cut(s) 189
AvaI CYCGRG 1 cut(s) 119
AvaII GGWCC 1 cut(s) 189
BaeGI GKGCMC 1 cut(s) 8
BalI TGGCCA 1 cut(s) 206
BanII GRGCYC 1 cut(s) 84
BbsI GAAGAC 2 cut(s) 19, 234
BlpI GCTNAGC 1 cut(s) 166
Bme18I GGWCC 1 cut(s) 189
BmeT110I CYCGRG 1 cut(s) 119
BmgBI CACGTC 1 cut(s) 240
BmgT120I GGNCC 1 cut(s) 189
BpiI GAAGAC 2 cut(s) 19, 234
Bpu1102I GCTNAGC 1 cut(s) 166
Bsa29I ATCGAT 1 cut(s) 148
BsaJI CCNNGG 2 cut(s) 156, 171
Bse118I RCCGGY 1 cut(s) 47
Bse1I ACTGG 1 cut(s) 207
BseCI ATCGAT 1 cut(s) 148
BseDI CCNNGG 2 cut(s) 156, 171
BseGI GGATG 1 cut(s) 18
BseMII CTCAG 3 cut(s) 25, 76, 180
BseNI ACTGG 1 cut(s) 207
BseRI GAGGAG 1 cut(s) 50
BseSI GKGCMC 1 cut(s) 8
BshFI GGCC 1 cut(s) 206
BshVI ATCGAT 1 cut(s) 148
BsiHKCI CYCGRG 1 cut(s) 119
BsiSI CCGG 1 cut(s) 48
BsnI GGCC 1 cut(s) 206
BsoBI CYCGRG 1 cut(s) 119
Bsp1286I GDGCHC 2 cut(s) 8, 84
Bsp1720I GCTNAGC 1 cut(s) 166
Bsp19I CCATGG 1 cut(s) 171
BspACI CCGC 1 cut(s) 36
BspANI GGCC 1 cut(s) 206
BspCNI CTCAG 3 cut(s) 24, 75, 179
BspDI ATCGAT 1 cut(s) 148
BsrFI RCCGGY 1 cut(s) 47
BsrI ACTGG 1 cut(s) 207
BssAI RCCGGY 1 cut(s) 47
BssECI CCNNGG 2 cut(s) 156, 171
BssT1I CCWWGG 2 cut(s) 156, 171
BstC8I GCNNGC 1 cut(s) 49
BstDEI CTNAG 3 cut(s) 11, 62, 166
BstDSI CCRYGG 1 cut(s) 171
BstF5I GGATG 1 cut(s) 18
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstSLI GKGCMC 1 cut(s) 8
BstV2I GAAGAC 2 cut(s) 19, 234
Bsu15I ATCGAT 1 cut(s) 148
BsuRI GGCC 1 cut(s) 206
BsuTUI ATCGAT 1 cut(s) 148
BtgI CCRYGG 1 cut(s) 171
BtrI CACGTC 1 cut(s) 240
BtsCI GGATG 1 cut(s) 18
BtsIMutI CAGTG 1 cut(s) 214
Cac8I GCNNGC 1 cut(s) 49
Cfr10I RCCGGY 1 cut(s) 47
Cfr13I GGNCC 1 cut(s) 189
ClaI ATCGAT 1 cut(s) 148
CviAII CATG 2 cut(s) 172, 202
CviJI RGCY 4 cut(s) 51, 82, 170, 206
CviKI_1 RGCY 4 cut(s) 51, 82, 170, 206
DdeI CTNAG 3 cut(s) 11, 62, 166
EaeI YGGCCR 1 cut(s) 204
EciI GGCGGA 1 cut(s) 25
Eco130I CCWWGG 2 cut(s) 156, 171
Eco24I GRGCYC 1 cut(s) 84
Eco47I GGWCC 1 cut(s) 189
Eco88I CYCGRG 1 cut(s) 119
EcoT14I CCWWGG 2 cut(s) 156, 171
EcoT38I GRGCYC 1 cut(s) 84
ErhI CCWWGG 2 cut(s) 156, 171
FaeI CATG 2 cut(s) 175, 205
FaiI YATR 3 cut(s) 173, 203, 223
FatI CATG 2 cut(s) 171, 201
FokI GGATG 1 cut(s) 5
FriOI GRGCYC 1 cut(s) 84
HaeIII GGCC 1 cut(s) 206
HapII CCGG 1 cut(s) 48
Hin1II CATG 2 cut(s) 175, 205
HincII GTYRAC 1 cut(s) 255
HindII GTYRAC 1 cut(s) 255
HinfI GANTC 2 cut(s) 15, 176
HpaII CCGG 1 cut(s) 48
Hpy166II GTNNAC 3 cut(s) 199, 212, 255
Hpy188I TCNGA 3 cut(s) 14, 65, 79
Hpy188III TCNNGA 2 cut(s) 121, 187
Hpy8I GTNNAC 3 cut(s) 199, 212, 255
Hpy99I CGWCG 1 cut(s) 107
HpyCH4IV ACGT 1 cut(s) 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
HpyF3I CTNAG 3 cut(s) 11, 62, 166
HpySE526I ACGT 1 cut(s) 239
Hsp92II CATG 2 cut(s) 175, 205
KroI GCCGGC 1 cut(s) 47
KroNI GCCGGC 1 cut(s) 49
LpnPI CCDG 4 cut(s) 61, 165, 172, 220
MaeII ACGT 1 cut(s) 239
MaeIII GTNAC 1 cut(s) 235
MboII GAAGA 3 cut(s) 19, 46, 234
MfeI CAATTG 1 cut(s) 89
MhlI GDGCHC 2 cut(s) 8, 84
MlsI TGGCCA 1 cut(s) 206
MluCI AATT 1 cut(s) 89
MluNI TGGCCA 1 cut(s) 206
MnlI CCTC 9 cut(s) 18, 32, 41, 68, 71, 80, 128, 219, 256
Mox20I TGGCCA 1 cut(s) 206
MroNI GCCGGC 1 cut(s) 47
MscI TGGCCA 1 cut(s) 206
MseI TTAA 1 cut(s) 126
Msp20I TGGCCA 1 cut(s) 206
MspI CCGG 1 cut(s) 48
MunI CAATTG 1 cut(s) 89
MwoI GCNNNNNNNGC 1 cut(s) 44
NaeI GCCGGC 1 cut(s) 49
NcoI CCATGG 1 cut(s) 171
NgoMIV GCCGGC 1 cut(s) 47
NlaIII CATG 2 cut(s) 175, 205
NmuCI GTSAC 1 cut(s) 235
PaeR7I CTCGAG 1 cut(s) 119
PdiI GCCGGC 1 cut(s) 49
PfeI GAWTC 2 cut(s) 15, 176
PspPI GGNCC 1 cut(s) 189
SaqAI TTAA 1 cut(s) 126
Sau96I GGNCC 1 cut(s) 189
SduI GDGCHC 2 cut(s) 8, 84
SetI ASST 6 cut(s) 72, 120, 162, 194, 222, 242
Sfr274I CTCGAG 1 cut(s) 119
SinI GGWCC 1 cut(s) 189
SlaI CTCGAG 1 cut(s) 119
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
Sse9I AATT 1 cut(s) 89
SsiI CCGC 1 cut(s) 36
StyI CCWWGG 2 cut(s) 156, 171
TaiI ACGT 1 cut(s) 242
TaqI TCGA 2 cut(s) 120, 148
TasI AATT 1 cut(s) 89
TfiI GAWTC 2 cut(s) 15, 176
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TscAI CASTG 1 cut(s) 214
TseFI GTSAC 1 cut(s) 235
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 1 cut(s) 7
TspRI CASTG 1 cut(s) 214
VpaK11BI GGWCC 1 cut(s) 189
XhoI CTCGAG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.