RchiOBHm_Chr5g0025021

expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0016546
Physical Location & Seq
Reverse (-)
19031128 .. 19031571
444 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30471

Sequence Viewer

Length: 282 bp
ATGAGTATCATGGGTAATACCCATTTTGGTTGTTGGGTGGGTATATTACCCGCGGGTTTTACCCAATTGAAAAAATGCCAACTTGAGAAACCTCAAATCCCAGCAGCCCCAATTGAAACCAATCGACCATGTGATCCACCTCGAAAATCCCCAAAACTCCCCCAATCGATTTTTCAAGCCATGGAATCAGGGTACTGTACCTTTGTGGACGTCGGCAGTGGACCATACAGTCCATACCTATGGAGGCCTCGCGTCACGTCTTCCACCAAGTCAACGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.28

Weight (kDa)

9.05

Isoelectric Point (pI)

53.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016546)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58375
fragaria_vesca FvH4_3g40240
malus_domestica MD03G1054900.v1.1 MD11G1056300.v1.1
prunus_persica Prupe.6G043500_v2.0.a1
pyrus_communis pycom03g04360 pycom11g04660
rosa_chinensis RchiOBHm_Chr5g0025021 RchiOBHm_Chr5g0072461
rosa_laevigata RLG00000033631
rosa_multiflora Rmu_sc0041000.1_g000001
rosa_roxburghii Rroxscaffold_1G00008740
rosa_samantha Rh5AG474900
rosa_wichuraiana Rw5G044090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 228
AatII GACGTC 1 cut(s) 213
AccII CGCG 2 cut(s) 53, 252
AciI CCGC 2 cut(s) 51, 53
AclWI GGATC 1 cut(s) 128
AcyI GRCGYC 1 cut(s) 210
AfaI GTAC 2 cut(s) 194, 199
AgsI TTSAA 3 cut(s) 70, 116, 176
AjiI CACGTC 1 cut(s) 258
AjuI GAANNNNNNNTTGG 2 cut(s) 156, 188
AlwI GGATC 1 cut(s) 128
AoxI GGCC 1 cut(s) 245
ApeKI GCWGC 1 cut(s) 104
AspS9I GGNCC 1 cut(s) 221
AvaII GGWCC 1 cut(s) 221
BbsI GAAGAC 1 cut(s) 252
BbvI GCAGC 1 cut(s) 116
BisI GCNGC 1 cut(s) 105
BlsI GCNGC 1 cut(s) 106
Bme18I GGWCC 1 cut(s) 221
BmgBI CACGTC 1 cut(s) 258
BmgT120I GGNCC 1 cut(s) 221
BpiI GAAGAC 1 cut(s) 252
BpuEI CTTGAG 1 cut(s) 104
Bsa29I ATCGAT 1 cut(s) 167
BsaHI GRCGYC 1 cut(s) 210
BsaJI CCNNGG 2 cut(s) 51, 180
BseCI ATCGAT 1 cut(s) 167
BseDI CCNNGG 2 cut(s) 51, 180
BseXI GCAGC 1 cut(s) 116
BseYI CCCAGC 1 cut(s) 100
Bsh1236I CGCG 2 cut(s) 53, 252
BshFI GGCC 1 cut(s) 247
BshVI ATCGAT 1 cut(s) 167
BsnI GGCC 1 cut(s) 247
Bsp143I GATC 1 cut(s) 133
Bsp19I CCATGG 1 cut(s) 180
BspACI CCGC 2 cut(s) 51, 53
BspANI GGCC 1 cut(s) 247
BspDI ATCGAT 1 cut(s) 167
BspFNI CGCG 2 cut(s) 53, 252
BspPI GGATC 1 cut(s) 128
BssECI CCNNGG 2 cut(s) 51, 180
BssMI GATC 1 cut(s) 133
BssNI GRCGYC 1 cut(s) 210
BssT1I CCWWGG 1 cut(s) 180
Bst4CI ACNGT 2 cut(s) 197, 230
BstACI GRCGYC 1 cut(s) 210
BstDSI CCRYGG 2 cut(s) 51, 180
BstFNI CGCG 2 cut(s) 53, 252
BstKTI GATC 1 cut(s) 136
BstMBI GATC 1 cut(s) 133
BstUI CGCG 2 cut(s) 53, 252
BstV1I GCAGC 1 cut(s) 116
BstV2I GAAGAC 1 cut(s) 252
BstXI CCANNNNNNTGG 1 cut(s) 240
Bsu15I ATCGAT 1 cut(s) 167
BsuRI GGCC 1 cut(s) 247
BsuTUI ATCGAT 1 cut(s) 167
BtgI CCRYGG 2 cut(s) 51, 180
BtrI CACGTC 1 cut(s) 258
BtsI GCAGTG 1 cut(s) 223
BtsIMutI CAGTG 1 cut(s) 223
Cfr13I GGNCC 1 cut(s) 221
Cfr42I CCGCGG 1 cut(s) 54
ClaI ATCGAT 1 cut(s) 167
CseI GACGC 1 cut(s) 241
Csp6I GTAC 2 cut(s) 193, 198
CviAII CATG 3 cut(s) 10, 129, 181
CviJI RGCY 3 cut(s) 107, 179, 247
CviKI_1 RGCY 3 cut(s) 107, 179, 247
CviQI GTAC 2 cut(s) 193, 198
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
DrdI GACNNNNNNGTC 1 cut(s) 228
DseDI GACNNNNNNGTC 1 cut(s) 228
Eco130I CCWWGG 1 cut(s) 180
Eco147I AGGCCT 1 cut(s) 247
Eco47I GGWCC 1 cut(s) 221
EcoT14I CCWWGG 1 cut(s) 180
ErhI CCWWGG 1 cut(s) 180
FaeI CATG 3 cut(s) 13, 132, 184
FaiI YATR 7 cut(s) 11, 44, 130, 182, 226, 235, 241
FatI CATG 3 cut(s) 9, 128, 180
FauI CCCGC 2 cut(s) 46, 58
Fnu4HI GCNGC 1 cut(s) 105
Fsp4HI GCNGC 1 cut(s) 105
GluI GCNGC 1 cut(s) 105
GsaI CCCAGC 1 cut(s) 104
HaeIII GGCC 1 cut(s) 247
HgaI GACGC 1 cut(s) 241
Hin1I GRCGYC 1 cut(s) 210
Hin1II CATG 3 cut(s) 13, 132, 184
HincII GTYRAC 1 cut(s) 273
HindII GTYRAC 1 cut(s) 273
HinfI GANTC 1 cut(s) 185
Hpy166II GTNNAC 3 cut(s) 208, 221, 273
Hpy8I GTNNAC 3 cut(s) 208, 221, 273
Hpy99I CGWCG 1 cut(s) 215
HpyCH4III ACNGT 2 cut(s) 197, 230
HpyCH4IV ACGT 2 cut(s) 210, 257
HpySE526I ACGT 2 cut(s) 210, 257
Hsp92I GRCGYC 1 cut(s) 210
Hsp92II CATG 3 cut(s) 13, 132, 184
KspI CCGCGG 1 cut(s) 54
Kzo9I GATC 1 cut(s) 133
LpnPI CCDG 2 cut(s) 114, 174
Lsp1109I GCAGC 1 cut(s) 116
MaeII ACGT 2 cut(s) 210, 257
MaeIII GTNAC 1 cut(s) 253
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MboII GAAGA 1 cut(s) 252
MfeI CAATTG 2 cut(s) 65, 111
MluCI AATT 2 cut(s) 65, 111
MnlI CCTC 4 cut(s) 102, 150, 237, 258
MslI CAYNNNNRTG 1 cut(s) 238
MspA1I CMGCKG 1 cut(s) 53
MunI CAATTG 2 cut(s) 65, 111
MvnI CGCG 2 cut(s) 53, 252
NcoI CCATGG 1 cut(s) 180
NdeII GATC 1 cut(s) 133
NlaIII CATG 3 cut(s) 13, 132, 184
NmuCI GTSAC 1 cut(s) 253
PceI AGGCCT 1 cut(s) 247
PfeI GAWTC 1 cut(s) 185
PkrI GCNGC 1 cut(s) 106
PspFI CCCAGC 1 cut(s) 100
PspPI GGNCC 1 cut(s) 221
RsaI GTAC 2 cut(s) 194, 199
RsaNI GTAC 2 cut(s) 193, 198
RseI CAYNNNNRTG 1 cut(s) 238
SacII CCGCGG 1 cut(s) 54
SatI GCNGC 1 cut(s) 105
Sau3AI GATC 1 cut(s) 133
Sau96I GGNCC 1 cut(s) 221
SetI ASST 6 cut(s) 94, 142, 203, 213, 240, 260
Sfr303I CCGCGG 1 cut(s) 54
SgrBI CCGCGG 1 cut(s) 54
SinI GGWCC 1 cut(s) 221
SmiMI CAYNNNNRTG 1 cut(s) 238
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
Sse9I AATT 2 cut(s) 65, 111
SseBI AGGCCT 1 cut(s) 247
SsiI CCGC 2 cut(s) 51, 53
StuI AGGCCT 1 cut(s) 247
StyI CCWWGG 1 cut(s) 180
TaaI ACNGT 2 cut(s) 197, 230
TaiI ACGT 2 cut(s) 213, 260
TaqI TCGA 3 cut(s) 124, 142, 167
TasI AATT 2 cut(s) 65, 111
TfiI GAWTC 1 cut(s) 185
TscAI CASTG 1 cut(s) 223
TseFI GTSAC 1 cut(s) 253
TseI GCWGC 1 cut(s) 104
Tsp45I GTSAC 1 cut(s) 253
TspRI CASTG 1 cut(s) 223
VpaK11BI GGWCC 1 cut(s) 221
ZraI GACGTC 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.