RchiOBHm_Chr5g0072461

expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0016546
Physical Location & Seq
Reverse (-)
78440868 .. 78441734
867 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34742

Sequence Viewer

Length: 450 bp
ATGTTGGTCAATGATCTCATTCCCCTAACTAAAATTGACCATTCTTCAACTGCACCCTTCCTGCTCCTCCCTCTCTTTTCTTTTTCATTTTATCATCATCACCCAACCCCACACATTTCTCTCTTAATCCCTCTTCTCTCTCTCTCTCTCTCTCAGACTCTTCCCCCTGAGAGATTGAGAATCGAAATGTGCCCTCTCAGATTCATCCTCGTCTTCCTCTCCGCCACCCTCGCCGGCTTCTTCCTCCTCAGAAACCTCAAATCCGAGCCCCCCCAATTGACCCCCACCGACGATGACACCCACCTCGAGATTAACCCCAAAAACTCCCCCAATCGATTTTCCAAGGTTTGCTCAGCCATGGAATCTGGGTTCTGGACCTTTGTGGACATGGCCAGTGGACGATACCTATGGAGGCATTTGGTCACGTCTTCCTCAAAGTCAACGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

16.92

Weight (kDa)

7.06

Isoelectric Point (pI)

47.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016546)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58375
fragaria_vesca FvH4_3g40240
malus_domestica MD03G1054900.v1.1 MD11G1056300.v1.1
prunus_persica Prupe.6G043500_v2.0.a1
pyrus_communis pycom03g04360 pycom11g04660
rosa_chinensis RchiOBHm_Chr5g0025021 RchiOBHm_Chr5g0072461
rosa_laevigata RLG00000033631
rosa_multiflora Rmu_sc0041000.1_g000001
rosa_roxburghii Rroxscaffold_1G00008740
rosa_samantha Rh5AG474900
rosa_wichuraiana Rw5G044090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 222
AcoI YGGCCR 1 cut(s) 390
AgsI TTSAA 1 cut(s) 48
AjiI CACGTC 1 cut(s) 426
AloI GAACNNNNNNTCC 2 cut(s) 353, 385
Ama87I CYCGRG 1 cut(s) 305
AoxI GGCC 1 cut(s) 390
AspS9I GGNCC 1 cut(s) 375
AsuHPI GGTGA 1 cut(s) 92
AvaI CYCGRG 1 cut(s) 305
AvaII GGWCC 1 cut(s) 375
BaeGI GKGCMC 1 cut(s) 194
BalI TGGCCA 1 cut(s) 392
BanII GRGCYC 1 cut(s) 270
BbsI GAAGAC 2 cut(s) 205, 420
BlpI GCTNAGC 1 cut(s) 352
Bme18I GGWCC 1 cut(s) 375
BmeT110I CYCGRG 1 cut(s) 305
BmgBI CACGTC 1 cut(s) 426
BmgT120I GGNCC 1 cut(s) 375
BpiI GAAGAC 2 cut(s) 205, 420
Bpu1102I GCTNAGC 1 cut(s) 352
Bsa29I ATCGAT 1 cut(s) 334
BsaJI CCNNGG 2 cut(s) 342, 357
Bse118I RCCGGY 1 cut(s) 233
Bse1I ACTGG 1 cut(s) 393
BseCI ATCGAT 1 cut(s) 334
BseDI CCNNGG 2 cut(s) 342, 357
BseGI GGATG 1 cut(s) 204
BseMII CTCAG 5 cut(s) 159, 167, 211, 262, 366
BseNI ACTGG 1 cut(s) 393
BseRI GAGGAG 2 cut(s) 56, 236
BseSI GKGCMC 1 cut(s) 194
BsgI GTGCAG 1 cut(s) 36
BshFI GGCC 1 cut(s) 392
BshVI ATCGAT 1 cut(s) 334
BsiHKCI CYCGRG 1 cut(s) 305
BsiSI CCGG 1 cut(s) 234
BsnI GGCC 1 cut(s) 392
BsoBI CYCGRG 1 cut(s) 305
Bsp1286I GDGCHC 2 cut(s) 194, 270
Bsp143I GATC 1 cut(s) 13
Bsp1720I GCTNAGC 1 cut(s) 352
Bsp19I CCATGG 1 cut(s) 357
BspACI CCGC 1 cut(s) 222
BspANI GGCC 1 cut(s) 392
BspCNI CTCAG 5 cut(s) 160, 166, 210, 261, 365
BspDI ATCGAT 1 cut(s) 334
BsrFI RCCGGY 1 cut(s) 233
BsrI ACTGG 1 cut(s) 393
BssAI RCCGGY 1 cut(s) 233
BssECI CCNNGG 2 cut(s) 342, 357
BssMI GATC 1 cut(s) 13
BssT1I CCWWGG 2 cut(s) 342, 357
Bst6I CTCTTC 2 cut(s) 138, 165
BstC8I GCNNGC 1 cut(s) 235
BstDEI CTNAG 5 cut(s) 153, 168, 197, 248, 352
BstDSI CCRYGG 1 cut(s) 357
BstF5I GGATG 1 cut(s) 204
BstKTI GATC 1 cut(s) 16
BstMBI GATC 1 cut(s) 13
BstMWI GCNNNNNNNGC 1 cut(s) 230
BstSLI GKGCMC 1 cut(s) 194
BstV2I GAAGAC 2 cut(s) 205, 420
Bsu15I ATCGAT 1 cut(s) 334
BsuRI GGCC 1 cut(s) 392
BsuTUI ATCGAT 1 cut(s) 334
BtgI CCRYGG 1 cut(s) 357
BtrI CACGTC 1 cut(s) 426
BtsCI GGATG 1 cut(s) 204
BtsIMutI CAGTG 1 cut(s) 400
Cac8I GCNNGC 1 cut(s) 235
Cfr10I RCCGGY 1 cut(s) 233
Cfr13I GGNCC 1 cut(s) 375
ClaI ATCGAT 1 cut(s) 334
CviAII CATG 2 cut(s) 358, 388
CviJI RGCY 4 cut(s) 237, 268, 356, 392
CviKI_1 RGCY 4 cut(s) 237, 268, 356, 392
DdeI CTNAG 5 cut(s) 153, 168, 197, 248, 352
DpnI GATC 1 cut(s) 15
DpnII GATC 1 cut(s) 13
EaeI YGGCCR 1 cut(s) 390
Eam1104I CTCTTC 2 cut(s) 138, 165
EarI CTCTTC 2 cut(s) 138, 165
EciI GGCGGA 1 cut(s) 211
Eco130I CCWWGG 2 cut(s) 342, 357
Eco24I GRGCYC 1 cut(s) 270
Eco47I GGWCC 1 cut(s) 375
Eco88I CYCGRG 1 cut(s) 305
EcoT14I CCWWGG 2 cut(s) 342, 357
EcoT38I GRGCYC 1 cut(s) 270
ErhI CCWWGG 2 cut(s) 342, 357
FaeI CATG 2 cut(s) 361, 391
FaiI YATR 3 cut(s) 359, 389, 409
FatI CATG 2 cut(s) 357, 387
FokI GGATG 1 cut(s) 191
FriOI GRGCYC 1 cut(s) 270
HaeIII GGCC 1 cut(s) 392
HapII CCGG 1 cut(s) 234
Hin1II CATG 2 cut(s) 361, 391
HincII GTYRAC 1 cut(s) 441
HindII GTYRAC 1 cut(s) 441
HinfI GANTC 4 cut(s) 157, 180, 201, 362
HpaII CCGG 1 cut(s) 234
HphI GGTGA 1 cut(s) 92
Hpy166II GTNNAC 3 cut(s) 385, 398, 441
Hpy188I TCNGA 4 cut(s) 156, 200, 251, 265
Hpy188III TCNNGA 2 cut(s) 307, 373
Hpy8I GTNNAC 3 cut(s) 385, 398, 441
Hpy99I CGWCG 1 cut(s) 293
HpyAV CCTTC 1 cut(s) 67
HpyCH4IV ACGT 1 cut(s) 425
HpyCH4V TGCA 1 cut(s) 53
HpyF10VI GCNNNNNNNGC 1 cut(s) 230
HpyF3I CTNAG 5 cut(s) 153, 168, 197, 248, 352
HpySE526I ACGT 1 cut(s) 425
Hsp92II CATG 2 cut(s) 361, 391
KroI GCCGGC 1 cut(s) 233
KroNI GCCGGC 1 cut(s) 235
Kzo9I GATC 1 cut(s) 13
LmnI GCTCC 1 cut(s) 69
LpnPI CCDG 6 cut(s) 74, 180, 247, 351, 358, 406
MaeII ACGT 1 cut(s) 425
MaeIII GTNAC 1 cut(s) 421
MalI GATC 1 cut(s) 15
MboI GATC 1 cut(s) 13
MboII GAAGA 6 cut(s) 36, 125, 152, 205, 232, 420
MfeI CAATTG 1 cut(s) 275
MhlI GDGCHC 2 cut(s) 194, 270
MlsI TGGCCA 1 cut(s) 392
MluCI AATT 2 cut(s) 33, 275
MluNI TGGCCA 1 cut(s) 392
MlyI GAGTC 1 cut(s) 151
Mox20I TGGCCA 1 cut(s) 392
MroNI GCCGGC 1 cut(s) 233
MscI TGGCCA 1 cut(s) 392
MseI TTAA 2 cut(s) 125, 312
Msp20I TGGCCA 1 cut(s) 392
MspI CCGG 1 cut(s) 234
MunI CAATTG 1 cut(s) 275
MwoI GCNNNNNNNGC 1 cut(s) 230
NaeI GCCGGC 1 cut(s) 235
NcoI CCATGG 1 cut(s) 357
NdeII GATC 1 cut(s) 13
NgoMIV GCCGGC 1 cut(s) 233
NlaIII CATG 2 cut(s) 361, 391
NmuCI GTSAC 1 cut(s) 421
PaeR7I CTCGAG 1 cut(s) 305
PdiI GCCGGC 1 cut(s) 235
PfeI GAWTC 3 cut(s) 180, 201, 362
PleI GAGTC 1 cut(s) 151
PpsI GAGTC 1 cut(s) 151
PspPI GGNCC 1 cut(s) 375
SaqAI TTAA 2 cut(s) 125, 312
Sau3AI GATC 1 cut(s) 13
Sau96I GGNCC 1 cut(s) 375
SchI GAGTC 1 cut(s) 151
SduI GDGCHC 2 cut(s) 194, 270
SetI ASST 6 cut(s) 258, 306, 348, 380, 408, 428
Sfr274I CTCGAG 1 cut(s) 305
SinI GGWCC 1 cut(s) 375
SlaI CTCGAG 1 cut(s) 305
SmlI CTYRAG 1 cut(s) 305
SmoI CTYRAG 1 cut(s) 305
Sse9I AATT 2 cut(s) 33, 275
SsiI CCGC 1 cut(s) 222
StyI CCWWGG 2 cut(s) 342, 357
TaiI ACGT 1 cut(s) 428
TaqI TCGA 3 cut(s) 183, 306, 334
TasI AATT 2 cut(s) 33, 275
TfiI GAWTC 3 cut(s) 180, 201, 362
Tru1I TTAA 2 cut(s) 125, 312
Tru9I TTAA 2 cut(s) 125, 312
TscAI CASTG 1 cut(s) 400
TseFI GTSAC 1 cut(s) 421
Tsp45I GTSAC 1 cut(s) 421
TspDTI ATGAA 2 cut(s) 75, 193
TspRI CASTG 1 cut(s) 400
VpaK11BI GGWCC 1 cut(s) 375
XhoI CTCGAG 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.