pycom03g04360

expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0016546
Physical Location & Seq
Forward (+)
3406367 .. 3406744
378 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g04360.2

Sequence Viewer

Length: 273 bp
ATGTGTCCCCTCCGACTGATTCTGATATTCCTCTCCGCCACCCTCGCCGGCTTCTTTGTCCTCAGAAACCTCAAATCCGACGACCCCAAATTGGAACCGCCGCAAGATGAACAAGAAACCCACCATTTCCAAAACCCCAACAAATCTCCCGACCGGTTCTCCAAGGTTCGCTCCGCCGTGGAATCCGGGTTCTGGACCGTCATGGACATGGCCAGCGGACGCTACCTCTGGAGGCATTTGTCGTCGCCGGCGACAGCGAAGCAGTCGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.29

Weight (kDa)

7.95

Isoelectric Point (pI)

61.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016546)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58375
fragaria_vesca FvH4_3g40240
malus_domestica MD03G1054900.v1.1 MD11G1056300.v1.1
prunus_persica Prupe.6G043500_v2.0.a1
pyrus_communis pycom03g04360 pycom11g04660
rosa_chinensis RchiOBHm_Chr5g0025021 RchiOBHm_Chr5g0072461
rosa_laevigata RLG00000033631
rosa_multiflora Rmu_sc0041000.1_g000001
rosa_roxburghii Rroxscaffold_1G00008740
rosa_samantha Rh5AG474900
rosa_wichuraiana Rw5G044090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 36, 98, 101, 174, 216
AcoI YGGCCR 1 cut(s) 210
AfiI CCNNNNNNNGG 2 cut(s) 91, 192
AgeI ACCGGT 1 cut(s) 153
AloI GAACNNNNNNTCC 2 cut(s) 173, 205
AoxI GGCC 1 cut(s) 210
AsiGI ACCGGT 1 cut(s) 153
AspS9I GGNCC 1 cut(s) 195
AsuC2I CCSGG 1 cut(s) 187
AvaII GGWCC 1 cut(s) 195
BalI TGGCCA 1 cut(s) 212
BceAI ACGGC 1 cut(s) 161
BcnI CCSGG 1 cut(s) 187
BisI GCNGC 1 cut(s) 101
BlsI GCNGC 1 cut(s) 102
Bme1390I CCNGG 1 cut(s) 187
Bme18I GGWCC 1 cut(s) 195
BmgT120I GGNCC 1 cut(s) 195
BmiI GGNNCC 1 cut(s) 96
BmrFI CCNGG 1 cut(s) 187
BpmI CTGGAG 1 cut(s) 250
BpuMI CCSGG 1 cut(s) 187
BsaJI CCNNGG 2 cut(s) 162, 177
BsaWI WCCGGW 1 cut(s) 153
BsaXI ACNNNNNCTCC 2 cut(s) 143, 173
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 192
Bse118I RCCGGY 3 cut(s) 47, 153, 247
BseDI CCNNGG 2 cut(s) 162, 177
BseLI CCNNNNNNNGG 2 cut(s) 91, 192
BseMII CTCAG 1 cut(s) 76
Bsh1285I CGRYCG 1 cut(s) 154
BshFI GGCC 1 cut(s) 212
BshTI ACCGGT 1 cut(s) 153
BsiEI CGRYCG 1 cut(s) 154
BsiSI CCGG 4 cut(s) 48, 154, 186, 248
BslI CCNNNNNNNGG 2 cut(s) 91, 192
BsnI GGCC 1 cut(s) 212
BspACI CCGC 5 cut(s) 36, 98, 101, 174, 216
BspANI GGCC 1 cut(s) 212
BspCNI CTCAG 1 cut(s) 75
BspLI GGNNCC 1 cut(s) 96
BsrFI RCCGGY 3 cut(s) 47, 153, 247
BssAI RCCGGY 3 cut(s) 47, 153, 247
BssECI CCNNGG 2 cut(s) 162, 177
BssT1I CCWWGG 1 cut(s) 162
Bst4CI ACNGT 1 cut(s) 199
BstC8I GCNNGC 3 cut(s) 49, 214, 249
BstDEI CTNAG 1 cut(s) 62
BstDSI CCRYGG 1 cut(s) 177
BstMCI CGRYCG 1 cut(s) 154
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstSCI CCNGG 1 cut(s) 185
BsuRI GGCC 1 cut(s) 212
BtgI CCRYGG 1 cut(s) 177
Cac8I GCNNGC 3 cut(s) 49, 214, 249
Cfr10I RCCGGY 3 cut(s) 47, 153, 247
Cfr13I GGNCC 1 cut(s) 195
CseI GACGC 1 cut(s) 228
CspAI ACCGGT 1 cut(s) 153
CviAII CATG 2 cut(s) 202, 208
CviJI RGCY 2 cut(s) 51, 212
CviKI_1 RGCY 2 cut(s) 51, 212
DdeI CTNAG 1 cut(s) 62
EaeI YGGCCR 1 cut(s) 210
EciI GGCGGA 2 cut(s) 25, 163
Eco130I CCWWGG 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 195
EcoT14I CCWWGG 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 2 cut(s) 205, 211
FaiI YATR 2 cut(s) 203, 209
FatI CATG 2 cut(s) 201, 207
Fnu4HI GCNGC 1 cut(s) 101
Fsp4HI GCNGC 1 cut(s) 101
GluI GCNGC 1 cut(s) 101
GsuI CTGGAG 1 cut(s) 250
HaeIII GGCC 1 cut(s) 212
HapII CCGG 4 cut(s) 48, 154, 186, 248
HgaI GACGC 1 cut(s) 228
Hin1II CATG 2 cut(s) 205, 211
HinfI GANTC 2 cut(s) 19, 182
HpaII CCGG 4 cut(s) 48, 154, 186, 248
Hpy188I TCNGA 5 cut(s) 14, 24, 65, 79, 268
Hpy188III TCNNGA 3 cut(s) 149, 193, 229
Hpy99I CGWCG 2 cut(s) 83, 247
HpyCH4III ACNGT 1 cut(s) 199
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
HpyF3I CTNAG 1 cut(s) 62
Hsp92II CATG 2 cut(s) 205, 211
KroI GCCGGC 2 cut(s) 47, 247
KroNI GCCGGC 2 cut(s) 49, 249
LmnI GCTCC 1 cut(s) 176
LpnPI CCDG 7 cut(s) 61, 167, 178, 199, 214, 226, 261
MlsI TGGCCA 1 cut(s) 212
MluCI AATT 1 cut(s) 89
MluNI TGGCCA 1 cut(s) 212
MmeI TCCRAC 3 cut(s) 37, 102, 246
MnlI CCTC 7 cut(s) 20, 41, 53, 71, 80, 225, 236
Mox20I TGGCCA 1 cut(s) 212
MreI CGCCGGCG 1 cut(s) 247
MroNI GCCGGC 2 cut(s) 47, 247
MscI TGGCCA 1 cut(s) 212
MslI CAYNNNNRTG 1 cut(s) 206
Msp20I TGGCCA 1 cut(s) 212
MspA1I CMGCKG 1 cut(s) 216
MspI CCGG 4 cut(s) 48, 154, 186, 248
MspR9I CCNGG 1 cut(s) 187
MwoI GCNNNNNNNGC 1 cut(s) 44
NaeI GCCGGC 2 cut(s) 49, 249
NciI CCSGG 1 cut(s) 187
NgoMIV GCCGGC 2 cut(s) 47, 247
NlaIII CATG 2 cut(s) 205, 211
NlaIV GGNNCC 1 cut(s) 96
PcsI WCGNNNNNNNCGW 1 cut(s) 248
PdiI GCCGGC 2 cut(s) 49, 249
PfeI GAWTC 2 cut(s) 19, 182
PinAI ACCGGT 1 cut(s) 153
PkrI GCNGC 1 cut(s) 102
PspN4I GGNNCC 1 cut(s) 96
PspPI GGNCC 1 cut(s) 195
RseI CAYNNNNRTG 1 cut(s) 206
SatI GCNGC 1 cut(s) 101
Sau96I GGNCC 1 cut(s) 195
ScrFI CCNGG 1 cut(s) 187
SetI ASST 3 cut(s) 72, 168, 228
SgrAI CRCCGGYG 1 cut(s) 247
SinI GGWCC 1 cut(s) 195
SmiMI CAYNNNNRTG 1 cut(s) 206
Sse9I AATT 1 cut(s) 89
SsiI CCGC 5 cut(s) 36, 98, 101, 174, 216
StyD4I CCNGG 1 cut(s) 185
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 1 cut(s) 199
TasI AATT 1 cut(s) 89
TauI GCSGC 1 cut(s) 103
TfiI GAWTC 2 cut(s) 19, 182
TspDTI ATGAA 1 cut(s) 123
VpaK11BI GGWCC 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.