Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0008921

Physical Location & Seq

Genomic Coordinates Reverse (-)

34761829 .. 34763242

Gene Structure 1414 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g41380.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCTCGTACCAAGCAAACTGCGCGCAAGTCAACTGGAGGGAAAGCTCCAAGGAAGAGTCTGGCCACCAAGATTGCTTATAAGTCTGCCCCTACCGCTGGAGGTGTGAAAAAGCCACACAGATTCCGCCCTGGTACTGTTGCTCTTCGTGAAATCCGCAAGTACCAGAAAAGTACTGATCTCCTGATCAGGAAGCTGCCATTCCAGAGGCTTGTTCGTGAAACTGCACAGAACTACAAGAGTGACCTGCGTTTTAATAGTCATGCGATACTGGCATTGCAGGAGGCTTCTGAGGCTTACCTTGTGGGTCTTTTCGAGGACACCAATCTCTGTGCTATCCATGCAAAGAGAGTTACAATCATGTCGAAAGATATGCAGCTGGCTCGGAGGATCAGGGGTGATCTGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000785 GO:0000786 GO:0000819 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0007049 GO:0007059 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009566 GO:0009567 GO:0009987 GO:0016043 GO:0019237 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0030154 GO:0031490 GO:0031491 GO:0031492 GO:0031497 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0032993 GO:0034508 GO:0034622 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044703 GO:0044815 GO:0044877 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048555 GO:0048609 GO:0048856 GO:0048869 GO:0051276 GO:0051382 GO:0051383 GO:0051704 GO:0055046 GO:0065003 GO:0065004 GO:0070925 GO:0071103 GO:0071824 GO:0071840 GO:0097159 GO:0098687 GO:0098813 GO:0140014 GO:1901363 GO:1903047 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko05034 ko05202 ko05322 map05034 map05202 map05322

Pfam Domains

Protein Families

Histone

Protein Analysis

137

Amino Acids

15.34

Weight (kDa)

10.89

Isoelectric Point (pI)

36.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	44 - 131	3.4e-35	Core histone H2A/H2B/H3/H4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0008921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G40030
fragaria_vesca	FvH4_3g41380 FvH4_5g36680
rosa_chinensis	RchiOBHm_Chr5g0074301 RchiOBHm_Chr5g0074311 RchiOBHm_Chr7g0224881
rosa_laevigata	RLG00000000890 RLG00000036465 RLG00000036466
rosa_multiflora	Rmu_sc0000307.1_g000006 Rmu_sc0000429.1_g000098 Rmu_sc0000573.1_g000028 Rmu_sc0000573.1_g000034 Rmu_sc0017298.1_g000004
rosa_rugosa	Rorug07G0226800
rosa_samantha	Rh3AG304800 Rh5AG487800 Rh5AG487900 Rh5BG508700 Rh5CG532600 Rh5DG521000 Rh7AG376600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	81
Acc36I	ACCTGC	1 cut(s)	255
AccII	CGCG	1 cut(s)	25
AciI	CCGC	3 cut(s)	96, 127, 157
AclWI	GGATC	1 cut(s)	398
AcoI	YGGCCR	1 cut(s)	63
AfaI	GTAC	4 cut(s)	10, 136, 164, 175
AfiI	CCNNNNNNNGG	1 cut(s)	98
AjnI	CCWGG	1 cut(s)	130
AluBI	AGCT	3 cut(s)	47, 196, 379
AluI	AGCT	3 cut(s)	47, 196, 379
AlwI	GGATC	1 cut(s)	398
AoxI	GGCC	1 cut(s)	63
ApeKI	GCWGC	2 cut(s)	196, 376
AspLEI	GCGC	2 cut(s)	25, 27
AsuHPI	GGTGA	1 cut(s)	410
BalI	TGGCCA	1 cut(s)	65
BbvI	GCAGC	2 cut(s)	183, 388
BcgI	CGANNNNNNTGC	4 cut(s)	355, 365, 389, 399
BciT130I	CCWGG	1 cut(s)	132
BclI	TGATCA	1 cut(s)	186
BfuAI	ACCTGC	1 cut(s)	255
BisI	GCNGC	2 cut(s)	197, 377
BlsI	GCNGC	2 cut(s)	198, 378
BmcAI	AGTACT	1 cut(s)	175
Bme1390I	CCNGG	1 cut(s)	132
BmrFI	CCNGG	1 cut(s)	132
BpmI	CTGGAG	2 cut(s)	57, 120
BsaJI	CCNNGG	2 cut(s)	50, 130
Bsc4I	CCNNNNNNNGG	1 cut(s)	98
Bse1I	ACTGG	2 cut(s)	40, 276
Bse3DI	GCAATG	1 cut(s)	275
BseBI	CCWGG	1 cut(s)	132
BseDI	CCNNGG	2 cut(s)	50, 130
BseLI	CCNNNNNNNGG	1 cut(s)	98
BseMI	GCAATG	1 cut(s)	275
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	2 cut(s)	40, 276
BsePI	GCGCGC	1 cut(s)	23
BseXI	GCAGC	2 cut(s)	183, 388
BsgI	GTGCAG	1 cut(s)	210
Bsh1236I	CGCG	1 cut(s)	25
BshFI	GGCC	1 cut(s)	65
BslI	CCNNNNNNNGG	1 cut(s)	98
BsnI	GGCC	1 cut(s)	65
Bsp143I	GATC	4 cut(s)	178, 186, 390, 400
BspACI	CCGC	3 cut(s)	96, 127, 157
BspANI	GGCC	1 cut(s)	65
BspCNI	CTCAG	1 cut(s)	283
BspFNI	CGCG	1 cut(s)	25
BspMI	ACCTGC	1 cut(s)	255
BspPI	GGATC	1 cut(s)	398
BspQI	GCTCTTC	1 cut(s)	150
BsrDI	GCAATG	1 cut(s)	275
BsrI	ACTGG	2 cut(s)	40, 276
BssECI	CCNNGG	2 cut(s)	50, 130
BssHII	GCGCGC	1 cut(s)	23
BssMI	GATC	4 cut(s)	178, 186, 390, 400
BssT1I	CCWWGG	1 cut(s)	50
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	1 cut(s)	139
Bst6I	CTCTTC	2 cut(s)	50, 150
BstC8I	GCNNGC	2 cut(s)	25, 381
BstDEI	CTNAG	1 cut(s)	291
BstFNI	CGCG	1 cut(s)	25
BstHHI	GCGC	2 cut(s)	25, 27
BstKTI	GATC	4 cut(s)	181, 189, 393, 403
BstMBI	GATC	4 cut(s)	178, 186, 390, 400
BstMWI	GCNNNNNNNGC	5 cut(s)	22, 95, 272, 293, 341
BstNI	CCWGG	1 cut(s)	132
BstSCI	CCNGG	1 cut(s)	130
BstUI	CGCG	1 cut(s)	25
BstV1I	GCAGC	2 cut(s)	183, 388
BsuRI	GGCC	1 cut(s)	65
BveI	ACCTGC	1 cut(s)	255
Cac8I	GCNNGC	2 cut(s)	25, 381
CfoI	GCGC	2 cut(s)	25, 27
Csp6I	GTAC	4 cut(s)	9, 135, 163, 174
CspCI	CAANNNNNGTGG	2 cut(s)	55, 90
CviAII	CATG	3 cut(s)	263, 341, 361
CviQI	GTAC	4 cut(s)	9, 135, 163, 174
DdeI	CTNAG	1 cut(s)	291
DpnI	GATC	4 cut(s)	180, 188, 392, 402
DpnII	GATC	4 cut(s)	178, 186, 390, 400
EaeI	YGGCCR	1 cut(s)	63
Eam1104I	CTCTTC	2 cut(s)	50, 150
EarI	CTCTTC	2 cut(s)	50, 150
EciI	GGCGGA	1 cut(s)	116
Eco130I	CCWWGG	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	130
EcoT14I	CCWWGG	1 cut(s)	50
ErhI	CCWWGG	1 cut(s)	50
FaeI	CATG	3 cut(s)	266, 344, 364
FaiI	YATR	5 cut(s)	81, 264, 342, 362, 374
FatI	CATG	3 cut(s)	262, 340, 360
FbaI	TGATCA	1 cut(s)	186
Fnu4HI	GCNGC	2 cut(s)	197, 377
Fsp4HI	GCNGC	2 cut(s)	197, 377
GlaI	GCGC	2 cut(s)	24, 26
GluI	GCNGC	2 cut(s)	197, 377
GsuI	CTGGAG	2 cut(s)	57, 120
HaeIII	GGCC	1 cut(s)	65
HhaI	GCGC	2 cut(s)	25, 27
Hin1II	CATG	3 cut(s)	266, 344, 364
Hin6I	GCGC	2 cut(s)	23, 25
HinP1I	GCGC	2 cut(s)	23, 25
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HinfI	GANTC	2 cut(s)	58, 123
HphI	GGTGA	1 cut(s)	410
Hpy166II	GTNNAC	1 cut(s)	33
Hpy188I	TCNGA	2 cut(s)	292, 387
Hpy188III	TCNNGA	5 cut(s)	149, 184, 190, 205, 218
Hpy8I	GTNNAC	1 cut(s)	33
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4V	TGCA	4 cut(s)	227, 280, 344, 376
HpyF10VI	GCNNNNNNNGC	5 cut(s)	22, 95, 272, 293, 341
HpyF3I	CTNAG	1 cut(s)	291
Hsp92II	CATG	3 cut(s)	266, 344, 364
HspAI	GCGC	2 cut(s)	23, 25
Ksp22I	TGATCA	1 cut(s)	186
Kzo9I	GATC	4 cut(s)	178, 186, 390, 400
LguI	GCTCTTC	1 cut(s)	150
LmnI	GCTCC	1 cut(s)	52
Lsp1109I	GCAGC	2 cut(s)	183, 388
MaeIII	GTNAC	2 cut(s)	242, 352
MalI	GATC	4 cut(s)	180, 188, 392, 402
MboI	GATC	4 cut(s)	178, 186, 390, 400
MboII	GAAGA	2 cut(s)	67, 137
MlsI	TGGCCA	1 cut(s)	65
MluNI	TGGCCA	1 cut(s)	65
MlyI	GAGTC	1 cut(s)	67
MnlI	CCTC	7 cut(s)	32, 95, 201, 277, 286, 310, 381
Mox20I	TGGCCA	1 cut(s)	65
MscI	TGGCCA	1 cut(s)	65
MseI	TTAA	2 cut(s)	255, 409
Msp20I	TGGCCA	1 cut(s)	65
MspA1I	CMGCKG	2 cut(s)	98, 379
MspR9I	CCNGG	1 cut(s)	132
MvaI	CCWGG	1 cut(s)	132
MvnI	CGCG	1 cut(s)	25
MwoI	GCNNNNNNNGC	5 cut(s)	22, 95, 272, 293, 341
NdeII	GATC	4 cut(s)	178, 186, 390, 400
NlaIII	CATG	3 cut(s)	266, 344, 364
NmuCI	GTSAC	1 cut(s)	242
PauI	GCGCGC	1 cut(s)	23
PciSI	GCTCTTC	1 cut(s)	150
PfeI	GAWTC	1 cut(s)	123
PkrI	GCNGC	2 cut(s)	198, 378
PleI	GAGTC	1 cut(s)	66
PpsI	GAGTC	1 cut(s)	66
PsiI	TTATAA	1 cut(s)	81
Psp6I	CCWGG	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	130
PteI	GCGCGC	1 cut(s)	23
PvuII	CAGCTG	1 cut(s)	379
RsaI	GTAC	4 cut(s)	10, 136, 164, 175
RsaNI	GTAC	4 cut(s)	9, 135, 163, 174
SapI	GCTCTTC	1 cut(s)	150
SaqAI	TTAA	2 cut(s)	255, 409
SatI	GCNGC	2 cut(s)	197, 377
Sau3AI	GATC	4 cut(s)	178, 186, 390, 400
ScaI	AGTACT	1 cut(s)	175
SchI	GAGTC	1 cut(s)	67
ScrFI	CCNGG	1 cut(s)	132
SetI	ASST	6 cut(s)	49, 106, 198, 249, 303, 381
SsiI	CCGC	3 cut(s)	96, 127, 157
StyD4I	CCNGG	1 cut(s)	130
StyI	CCWWGG	1 cut(s)	50
TaaI	ACNGT	1 cut(s)	139
TaqI	TCGA	2 cut(s)	315, 365
TatI	WGTACW	1 cut(s)	173
TfiI	GAWTC	1 cut(s)	123
Tru1I	TTAA	2 cut(s)	255, 409
Tru9I	TTAA	2 cut(s)	255, 409
TseFI	GTSAC	1 cut(s)	242
TseI	GCWGC	2 cut(s)	196, 376
Tsp45I	GTSAC	1 cut(s)	242
ZrmI	AGTACT	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.