Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008921

Physical Location & Seq

Genomic Coordinates Reverse (-)

80232800 .. 80233213

Gene Structure 414 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34912

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCTCGTACTAAGCAAACTGCTCGCAAGTCAACTGGAGGAAAGGCTCCAAGGAAGAGTCTGGCCACCAAGATTGCTTATAAGTCCGCCCCCTCCACAGCTGGAGGTGTGAAGAAGCCCCACAGATTCCGCCCCGGTACTTGTGCTCTTCGCGAAATCCGAAAGTACCAGAAGTGTACTGATCTCCTGATCAGGAAGCTGCCATTCCAGAGGCTTGTTCGCGAAATTGCCCAGAACTACAAGAGTGATCTGCATTTTAATAGCCATGCGGTGCTGGCATTGCAGGAGGCTTCTGAGGCTTACCTTGTGCATCTTTTCGAGGACACGAATCTCTGCGCTATCCATGCAAGGCGAGTTACCATCATGCCGAAAGATATGCAGCTGGCTCGGAGAATCAGGGGTGAGCGGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000785 GO:0000786 GO:0000819 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0007049 GO:0007059 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009566 GO:0009567 GO:0009987 GO:0016043 GO:0019237 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0030154 GO:0031490 GO:0031491 GO:0031492 GO:0031497 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0032993 GO:0034508 GO:0034622 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044703 GO:0044815 GO:0044877 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048555 GO:0048609 GO:0048856 GO:0048869 GO:0051276 GO:0051382 GO:0051383 GO:0051704 GO:0055046 GO:0065003 GO:0065004 GO:0070925 GO:0071103 GO:0071824 GO:0071840 GO:0097159 GO:0098687 GO:0098813 GO:0140014 GO:1901363 GO:1903047 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko05034 ko05202 ko05322 map05034 map05202 map05322

Pfam Domains

Protein Families

Histone

Protein Analysis

137

Amino Acids

15.66

Weight (kDa)

10.61

Isoelectric Point (pI)

38.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	45 - 132	1.1e-34	Core histone H2A/H2B/H3/H4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0008921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G40030
fragaria_vesca	FvH4_3g41380 FvH4_5g36680
rosa_chinensis	RchiOBHm_Chr5g0074301 RchiOBHm_Chr5g0074311 RchiOBHm_Chr7g0224881
rosa_laevigata	RLG00000000890 RLG00000036465 RLG00000036466
rosa_multiflora	Rmu_sc0000307.1_g000006 Rmu_sc0000429.1_g000098 Rmu_sc0000573.1_g000028 Rmu_sc0000573.1_g000034 Rmu_sc0017298.1_g000004
rosa_rugosa	Rorug07G0226800
rosa_samantha	Rh3AG304800 Rh5AG487800 Rh5AG487900 Rh5BG508700 Rh5CG532600 Rh5DG521000 Rh7AG376600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	81
AccBSI	CCGCTC	1 cut(s)	406
AccII	CGCG	2 cut(s)	153, 222
AciI	CCGC	4 cut(s)	87, 130, 269, 406
AcoI	YGGCCR	1 cut(s)	63
AfaI	GTAC	5 cut(s)	10, 139, 167, 178, 410
AluBI	AGCT	3 cut(s)	101, 199, 382
AluI	AGCT	3 cut(s)	101, 199, 382
Alw21I	GWGCWC	1 cut(s)	148
AoxI	GGCC	1 cut(s)	63
ApeKI	GCWGC	2 cut(s)	199, 379
AspLEI	GCGC	1 cut(s)	338
AsuC2I	CCSGG	1 cut(s)	135
AsuHPI	GGTGA	1 cut(s)	413
BalI	TGGCCA	1 cut(s)	65
Bbv12I	GWGCWC	1 cut(s)	148
BbvI	GCAGC	2 cut(s)	186, 391
BccI	CCATC	1 cut(s)	368
BcgI	CGANNNNNNTGC	6 cut(s)	5, 39, 358, 368, 392, 402
BclI	TGATCA	1 cut(s)	189
BcnI	CCSGG	1 cut(s)	135
BisI	GCNGC	2 cut(s)	200, 380
BlsI	GCNGC	2 cut(s)	201, 381
Bme1390I	CCNGG	1 cut(s)	135
BmiI	GGNNCC	1 cut(s)	48
BmrFI	CCNGG	1 cut(s)	135
BmsI	GCATC	1 cut(s)	319
BpmI	CTGGAG	2 cut(s)	57, 123
BpuMI	CCSGG	1 cut(s)	135
BsaJI	CCNNGG	2 cut(s)	50, 133
Bse1I	ACTGG	1 cut(s)	40
Bse3DI	GCAATG	1 cut(s)	278
BseDI	CCNNGG	2 cut(s)	50, 133
BseMI	GCAATG	1 cut(s)	278
BseMII	CTCAG	1 cut(s)	285
BseNI	ACTGG	1 cut(s)	40
BseXI	GCAGC	2 cut(s)	186, 391
Bsh1236I	CGCG	2 cut(s)	153, 222
BshFI	GGCC	1 cut(s)	65
BsiHKAI	GWGCWC	1 cut(s)	148
BsiSI	CCGG	1 cut(s)	135
BsnI	GGCC	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	3 cut(s)	181, 189, 247
Bsp68I	TCGCGA	2 cut(s)	153, 222
BspACI	CCGC	4 cut(s)	87, 130, 269, 406
BspANI	GGCC	1 cut(s)	65
BspCNI	CTCAG	1 cut(s)	286
BspFNI	CGCG	2 cut(s)	153, 222
BspLI	GGNNCC	1 cut(s)	48
BspQI	GCTCTTC	1 cut(s)	153
BsrBI	CCGCTC	1 cut(s)	406
BsrDI	GCAATG	1 cut(s)	278
BsrI	ACTGG	1 cut(s)	40
BssECI	CCNNGG	2 cut(s)	50, 133
BssMI	GATC	3 cut(s)	181, 189, 247
BssT1I	CCWWGG	1 cut(s)	50
Bst6I	CTCTTC	2 cut(s)	50, 153
BstC8I	GCNNGC	3 cut(s)	25, 276, 384
BstDEI	CTNAG	2 cut(s)	12, 294
BstFNI	CGCG	2 cut(s)	153, 222
BstHHI	GCGC	1 cut(s)	338
BstKTI	GATC	3 cut(s)	184, 192, 250
BstMBI	GATC	3 cut(s)	181, 189, 247
BstMWI	GCNNNNNNNGC	4 cut(s)	275, 280, 296, 344
BstSCI	CCNGG	1 cut(s)	133
BstUI	CGCG	2 cut(s)	153, 222
BstV1I	GCAGC	2 cut(s)	186, 391
BsuRI	GGCC	1 cut(s)	65
BtuMI	TCGCGA	2 cut(s)	153, 222
Cac8I	GCNNGC	3 cut(s)	25, 276, 384
CfoI	GCGC	1 cut(s)	338
Csp6I	GTAC	5 cut(s)	9, 138, 166, 177, 409
CspCI	CAANNNNNGTGG	2 cut(s)	55, 90
CviAII	CATG	3 cut(s)	266, 344, 364
CviQI	GTAC	5 cut(s)	9, 138, 166, 177, 409
DdeI	CTNAG	2 cut(s)	12, 294
DpnI	GATC	3 cut(s)	183, 191, 249
DpnII	GATC	3 cut(s)	181, 189, 247
EaeI	YGGCCR	1 cut(s)	63
Eam1104I	CTCTTC	2 cut(s)	50, 153
EarI	CTCTTC	2 cut(s)	50, 153
EciI	GGCGGA	2 cut(s)	76, 119
Eco130I	CCWWGG	1 cut(s)	50
EcoT14I	CCWWGG	1 cut(s)	50
ErhI	CCWWGG	1 cut(s)	50
FaeI	CATG	3 cut(s)	269, 347, 367
FaiI	YATR	5 cut(s)	81, 267, 345, 365, 377
FatI	CATG	3 cut(s)	265, 343, 363
FbaI	TGATCA	1 cut(s)	189
Fnu4HI	GCNGC	2 cut(s)	200, 380
Fsp4HI	GCNGC	2 cut(s)	200, 380
GlaI	GCGC	1 cut(s)	337
GluI	GCNGC	2 cut(s)	200, 380
GsuI	CTGGAG	2 cut(s)	57, 123
HaeIII	GGCC	1 cut(s)	65
HapII	CCGG	1 cut(s)	135
HhaI	GCGC	1 cut(s)	338
Hin1II	CATG	3 cut(s)	269, 347, 367
Hin6I	GCGC	1 cut(s)	336
HinP1I	GCGC	1 cut(s)	336
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HinfI	GANTC	4 cut(s)	58, 126, 328, 393
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	1 cut(s)	413
Hpy166II	GTNNAC	2 cut(s)	33, 177
Hpy188I	TCNGA	3 cut(s)	161, 295, 390
Hpy188III	TCNNGA	5 cut(s)	152, 187, 193, 208, 221
Hpy8I	GTNNAC	2 cut(s)	33, 177
HpyCH4V	TGCA	5 cut(s)	253, 283, 310, 347, 379
HpyF10VI	GCNNNNNNNGC	4 cut(s)	275, 280, 296, 344
HpyF3I	CTNAG	2 cut(s)	12, 294
Hsp92II	CATG	3 cut(s)	269, 347, 367
HspAI	GCGC	1 cut(s)	336
Ksp22I	TGATCA	1 cut(s)	189
Kzo9I	GATC	3 cut(s)	181, 189, 247
LguI	GCTCTTC	1 cut(s)	153
LmnI	GCTCC	1 cut(s)	52
Lsp1109I	GCAGC	2 cut(s)	186, 391
LweI	GCATC	1 cut(s)	319
MaeIII	GTNAC	1 cut(s)	355
MalI	GATC	3 cut(s)	183, 191, 249
MbiI	CCGCTC	1 cut(s)	406
MboI	GATC	3 cut(s)	181, 189, 247
MboII	GAAGA	3 cut(s)	67, 124, 140
MhlI	GDGCHC	1 cut(s)	148
MlsI	TGGCCA	1 cut(s)	65
MluCI	AATT	1 cut(s)	225
MluNI	TGGCCA	1 cut(s)	65
MlyI	GAGTC	1 cut(s)	67
MnlI	CCTC	7 cut(s)	32, 98, 103, 204, 280, 289, 313
Mox20I	TGGCCA	1 cut(s)	65
MscI	TGGCCA	1 cut(s)	65
MseI	TTAA	1 cut(s)	258
Msp20I	TGGCCA	1 cut(s)	65
MspA1I	CMGCKG	2 cut(s)	101, 382
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	1 cut(s)	135
MvnI	CGCG	2 cut(s)	153, 222
MwoI	GCNNNNNNNGC	4 cut(s)	275, 280, 296, 344
NciI	CCSGG	1 cut(s)	135
NdeII	GATC	3 cut(s)	181, 189, 247
NlaIII	CATG	3 cut(s)	269, 347, 367
NlaIV	GGNNCC	1 cut(s)	48
NruI	TCGCGA	2 cut(s)	153, 222
PciSI	GCTCTTC	1 cut(s)	153
PcsI	WCGNNNNNNNCGW	1 cut(s)	157
PfeI	GAWTC	3 cut(s)	126, 328, 393
PkrI	GCNGC	2 cut(s)	201, 381
PleI	GAGTC	1 cut(s)	66
PpsI	GAGTC	1 cut(s)	66
PsiI	TTATAA	1 cut(s)	81
PspN4I	GGNNCC	1 cut(s)	48
PvuII	CAGCTG	2 cut(s)	101, 382
RruI	TCGCGA	2 cut(s)	153, 222
RsaI	GTAC	5 cut(s)	10, 139, 167, 178, 410
RsaNI	GTAC	5 cut(s)	9, 138, 166, 177, 409
SapI	GCTCTTC	1 cut(s)	153
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	2 cut(s)	200, 380
Sau3AI	GATC	3 cut(s)	181, 189, 247
SchI	GAGTC	1 cut(s)	67
ScrFI	CCNGG	1 cut(s)	135
SduI	GDGCHC	1 cut(s)	148
SetI	ASST	5 cut(s)	103, 109, 201, 306, 384
SfaNI	GCATC	1 cut(s)	319
Sse9I	AATT	1 cut(s)	225
SsiI	CCGC	4 cut(s)	87, 130, 269, 406
StyD4I	CCNGG	1 cut(s)	133
StyI	CCWWGG	1 cut(s)	50
TaqI	TCGA	1 cut(s)	318
TasI	AATT	1 cut(s)	225
TatI	WGTACW	1 cut(s)	176
TfiI	GAWTC	3 cut(s)	126, 328, 393
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TseI	GCWGC	2 cut(s)	199, 379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.