RLG00000000890

histone H3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0008921
Physical Location & Seq
Reverse (-)
7462141 .. 7463578
1438 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000890

Sequence Viewer

Length: 447 bp
ATGGGATGTAATGAGAGTCCAAGAAACAAGAAAAAGATGGCCCGTACCAAGCAGACTGCTCGTAAGTCCACTGGAGGAAAGGCTCCAAGGAAGCAATTGGCTACCAAGGCTGCTCGTAAGTCAGCCCCGACCACCGGGGGTGTGAAGAAGCCCCACAGATACCGCCCCGGAACTGTTGCCCTTCGTGAAATCCGCAAGTACCAGAAGAGCACGGAGCTACTGATCAGGAAGCTCCCATTCCAGAGGCTGGTTCGTGAGATTGCACAGGACTTCAAGACTGACCTGCGTTTCCAGAGCCATGCTGTTTTGGCACTGCAGGAGGCGGCGGAGGCCTACCTTGTTGGGTTGTTTGAGGACACAAATCTCTGTGCAATTCATGCCAAGCGCGTCACTATTATGCCCAAGGATATCCAGCTCGCCAGGAGAATCAGGGGCGAGAGGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05202 ko05322 map05034 map05202 map05322
Pfam Domains
Protein Families
Histone

Protein Analysis

149

Amino Acids

16.78

Weight (kDa)

11.03

Isoelectric Point (pI)

44.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 56 - 143 1.3e-38 Core histone H2A/H2B/H3/H4 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 291
AccB7I CCANNNNNTGG 1 cut(s) 247
AccII CGCG 1 cut(s) 387
AciI CCGC 4 cut(s) 163, 193, 323, 326
AfaI GTAC 2 cut(s) 46, 200
AfiI CCNNNNNNNGG 2 cut(s) 134, 247
AgsI TTSAA 1 cut(s) 274
AjnI CCWGG 1 cut(s) 419
AluBI AGCT 3 cut(s) 217, 232, 415
AluI AGCT 3 cut(s) 217, 232, 415
Alw21I GWGCWC 1 cut(s) 212
AlwNI CAGNNNCTG 1 cut(s) 247
AoxI GGCC 2 cut(s) 39, 330
ApeKI GCWGC 1 cut(s) 110
AspLEI GCGC 1 cut(s) 387
AspS9I GGNCC 1 cut(s) 40
AsuC2I CCSGG 2 cut(s) 136, 168
Bbv12I GWGCWC 1 cut(s) 212
BbvI GCAGC 1 cut(s) 97
BccI CCATC 1 cut(s) 31
BcgI CGANNNNNNTGC 2 cut(s) 41, 75
BciT130I CCWGG 1 cut(s) 421
BclI TGATCA 1 cut(s) 222
BcnI CCSGG 2 cut(s) 136, 168
BfmI CTRYAG 1 cut(s) 314
BfuAI ACCTGC 1 cut(s) 291
BisI GCNGC 2 cut(s) 111, 324
BlsI GCNGC 2 cut(s) 112, 325
Bme1390I CCNGG 3 cut(s) 136, 168, 421
BmgT120I GGNCC 1 cut(s) 40
BmiI GGNNCC 1 cut(s) 84
BmrFI CCNGG 3 cut(s) 136, 168, 421
BpmI CTGGAG 1 cut(s) 93
BpuMI CCSGG 2 cut(s) 136, 168
BsaJI CCNNGG 5 cut(s) 86, 105, 135, 166, 402
Bsc4I CCNNNNNNNGG 2 cut(s) 134, 247
Bse1I ACTGG 1 cut(s) 76
BseBI CCWGG 1 cut(s) 421
BseDI CCNNGG 5 cut(s) 86, 105, 135, 166, 402
BseGI GGATG 1 cut(s) 11
BseLI CCNNNNNNNGG 2 cut(s) 134, 247
BseNI ACTGG 1 cut(s) 76
BseXI GCAGC 1 cut(s) 97
Bsh1236I CGCG 1 cut(s) 387
BshFI GGCC 2 cut(s) 41, 332
BsiHKAI GWGCWC 1 cut(s) 212
BsiSI CCGG 2 cut(s) 135, 168
BslI CCNNNNNNNGG 2 cut(s) 134, 247
BsnI GGCC 2 cut(s) 41, 332
Bsp1286I GDGCHC 1 cut(s) 212
Bsp143I GATC 1 cut(s) 222
BspACI CCGC 4 cut(s) 163, 193, 323, 326
BspANI GGCC 2 cut(s) 41, 332
BspFNI CGCG 1 cut(s) 387
BspLI GGNNCC 1 cut(s) 84
BspMAI CTGCAG 1 cut(s) 318
BspMI ACCTGC 1 cut(s) 291
BspQI GCTCTTC 1 cut(s) 200
BsrI ACTGG 1 cut(s) 76
BssECI CCNNGG 5 cut(s) 86, 105, 135, 166, 402
BssMI GATC 1 cut(s) 222
BssT1I CCWWGG 3 cut(s) 86, 105, 402
Bst2UI CCWGG 1 cut(s) 421
Bst4CI ACNGT 1 cut(s) 175
Bst6I CTCTTC 1 cut(s) 200
BstAPI GCANNNNNTGC 1 cut(s) 377
BstC8I GCNNGC 1 cut(s) 417
BstF5I GGATG 1 cut(s) 11
BstFNI CGCG 1 cut(s) 387
BstHHI GCGC 1 cut(s) 387
BstKTI GATC 1 cut(s) 225
BstMBI GATC 1 cut(s) 222
BstMWI GCNNNNNNNGC 4 cut(s) 107, 308, 329, 377
BstNI CCWGG 1 cut(s) 421
BstSCI CCNGG 3 cut(s) 134, 166, 419
BstSFI CTRYAG 1 cut(s) 314
BstUI CGCG 1 cut(s) 387
BstV1I GCAGC 1 cut(s) 97
BsuRI GGCC 2 cut(s) 41, 332
BtsCI GGATG 1 cut(s) 11
BtsI GCAGTG 1 cut(s) 311
BtsIMutI CAGTG 2 cut(s) 69, 311
BveI ACCTGC 1 cut(s) 291
Cac8I GCNNGC 1 cut(s) 417
CaiI CAGNNNCTG 1 cut(s) 247
CfoI GCGC 1 cut(s) 387
Cfr13I GGNCC 1 cut(s) 40
CseI GACGC 1 cut(s) 376
Csp6I GTAC 2 cut(s) 45, 199
CviAII CATG 2 cut(s) 299, 377
CviQI GTAC 2 cut(s) 45, 199
DpnI GATC 1 cut(s) 224
DpnII GATC 1 cut(s) 222
Eam1104I CTCTTC 1 cut(s) 200
EarI CTCTTC 1 cut(s) 200
EciI GGCGGA 1 cut(s) 341
Eco130I CCWWGG 3 cut(s) 86, 105, 402
Eco147I AGGCCT 1 cut(s) 332
Eco32I GATATC 1 cut(s) 409
EcoRII CCWGG 1 cut(s) 419
EcoRV GATATC 1 cut(s) 409
EcoT14I CCWWGG 3 cut(s) 86, 105, 402
ErhI CCWWGG 3 cut(s) 86, 105, 402
FaeI CATG 2 cut(s) 302, 380
FaiI YATR 3 cut(s) 300, 378, 398
FatI CATG 2 cut(s) 298, 376
FbaI TGATCA 1 cut(s) 222
Fnu4HI GCNGC 2 cut(s) 111, 324
FokI GGATG 1 cut(s) 18
Fsp4HI GCNGC 2 cut(s) 111, 324
GlaI GCGC 1 cut(s) 386
GluI GCNGC 2 cut(s) 111, 324
GsuI CTGGAG 1 cut(s) 93
HaeIII GGCC 2 cut(s) 41, 332
HapII CCGG 2 cut(s) 135, 168
HgaI GACGC 1 cut(s) 376
HhaI GCGC 1 cut(s) 387
Hin1II CATG 2 cut(s) 302, 380
Hin6I GCGC 1 cut(s) 385
HinP1I GCGC 1 cut(s) 385
HinfI GANTC 2 cut(s) 16, 426
HpaII CCGG 2 cut(s) 135, 168
Hpy166II GTNNAC 1 cut(s) 69
Hpy188III TCNNGA 6 cut(s) 185, 226, 241, 254, 274, 292
Hpy8I GTNNAC 1 cut(s) 69
HpyAV CCTTC 1 cut(s) 191
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4V TGCA 3 cut(s) 263, 316, 371
HpyF10VI GCNNNNNNNGC 4 cut(s) 107, 308, 329, 377
Hsp92II CATG 2 cut(s) 302, 380
HspAI GCGC 1 cut(s) 385
Ksp22I TGATCA 1 cut(s) 222
Kzo9I GATC 1 cut(s) 222
LguI GCTCTTC 1 cut(s) 200
LmnI GCTCC 3 cut(s) 88, 214, 237
Lsp1109I GCAGC 1 cut(s) 97
MaeIII GTNAC 1 cut(s) 388
MalI GATC 1 cut(s) 224
MboI GATC 1 cut(s) 222
MboII GAAGA 2 cut(s) 157, 217
MfeI CAATTG 1 cut(s) 95
MhlI GDGCHC 1 cut(s) 212
MluCI AATT 2 cut(s) 95, 372
MlyI GAGTC 1 cut(s) 25
MnlI CCTC 6 cut(s) 68, 237, 313, 322, 346, 432
MseI TTAA 1 cut(s) 445
MslI CAYNNNNRTG 1 cut(s) 395
MspI CCGG 2 cut(s) 135, 168
MspR9I CCNGG 3 cut(s) 136, 168, 421
MunI CAATTG 1 cut(s) 95
MvaI CCWGG 1 cut(s) 421
MvnI CGCG 1 cut(s) 387
MwoI GCNNNNNNNGC 4 cut(s) 107, 308, 329, 377
NciI CCSGG 2 cut(s) 136, 168
NdeII GATC 1 cut(s) 222
NlaIII CATG 2 cut(s) 302, 380
NlaIV GGNNCC 1 cut(s) 84
NmuCI GTSAC 1 cut(s) 388
PceI AGGCCT 1 cut(s) 332
PciSI GCTCTTC 1 cut(s) 200
PfeI GAWTC 1 cut(s) 426
PflMI CCANNNNNTGG 1 cut(s) 247
PkrI GCNGC 2 cut(s) 112, 325
PleI GAGTC 1 cut(s) 24
PpsI GAGTC 1 cut(s) 24
Psp6I CCWGG 1 cut(s) 419
PspGI CCWGG 1 cut(s) 419
PspN4I GGNNCC 1 cut(s) 84
PspPI GGNCC 1 cut(s) 40
PstI CTGCAG 1 cut(s) 318
PstNI CAGNNNCTG 1 cut(s) 247
RsaI GTAC 2 cut(s) 46, 200
RsaNI GTAC 2 cut(s) 45, 199
RseI CAYNNNNRTG 1 cut(s) 395
SapI GCTCTTC 1 cut(s) 200
SaqAI TTAA 1 cut(s) 445
SatI GCNGC 2 cut(s) 111, 324
Sau3AI GATC 1 cut(s) 222
Sau96I GGNCC 1 cut(s) 40
SchI GAGTC 1 cut(s) 25
ScrFI CCNGG 3 cut(s) 136, 168, 421
SduI GDGCHC 1 cut(s) 212
SetI ASST 5 cut(s) 219, 234, 285, 339, 417
SfcI CTRYAG 1 cut(s) 314
SmiMI CAYNNNNRTG 1 cut(s) 395
Sse9I AATT 2 cut(s) 95, 372
SseBI AGGCCT 1 cut(s) 332
SsiI CCGC 4 cut(s) 163, 193, 323, 326
StuI AGGCCT 1 cut(s) 332
StyD4I CCNGG 3 cut(s) 134, 166, 419
StyI CCWWGG 3 cut(s) 86, 105, 402
TaaI ACNGT 1 cut(s) 175
TasI AATT 2 cut(s) 95, 372
TauI GCSGC 1 cut(s) 326
TfiI GAWTC 1 cut(s) 426
Tru1I TTAA 1 cut(s) 445
Tru9I TTAA 1 cut(s) 445
TscAI CASTG 2 cut(s) 76, 318
TseFI GTSAC 1 cut(s) 388
TseI GCWGC 1 cut(s) 110
Tsp45I GTSAC 1 cut(s) 388
TspDTI ATGAA 1 cut(s) 365
TspGWI ACGGA 1 cut(s) 227
TspRI CASTG 2 cut(s) 76, 318
Van91I CCANNNNNTGG 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.