Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008921

Physical Location & Seq

Genomic Coordinates Reverse (-)

80262362 .. 80262775

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34913

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCTCGTACTAAGCAAACTGCTCGCAAGTCAACTGGAGGGAAAGCTCCAAGGAAGAGTTTGGCCACCAAGATTGCTTATAAGTCTGCCCCAAGCACCGCTGGAGGTGTGAAGAAGCCACACAGATACCGCCCTGGTACTGTTGCTCTTCGCGAAATCCGCAAGTACCAGAAAAGTACTGATCTCTTGATCAGGAAGCTGCCATTCCAGAGGCTTGTTCGTGAAACTGCGCAGAACCACAAGAGTGATCTGCGTTTTAATAGCCATGCGGTGATGGCATTGCAGGAGGCTTCTGAGGCTTACCTTGTGAGGCTGTTTGAGGATACGAATCTCTGCTCTATCCATGCAAAGCGAGTAACCATCATGCCGAAAGATATGCAGCTGGCTCGGAGGATCAGGGGTGATCTGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05034 ko05202 ko05322 map05034 map05202 map05322

Pfam Domains

Protein Families

Histone

Protein Analysis

137

Amino Acids

15.58

Weight (kDa)

11.03

Isoelectric Point (pI)

36.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	45 - 132	2.1e-36	Core histone H2A/H2B/H3/H4 domain
CENP-T_C	PF15511	70 - 131	8.5e-06	Centromere kinetochore component CENP-T histone fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G40030
fragaria_vesca	FvH4_3g41380 FvH4_5g36680
rosa_chinensis	RchiOBHm_Chr5g0074301 RchiOBHm_Chr5g0074311 RchiOBHm_Chr7g0224881
rosa_laevigata	RLG00000000890 RLG00000036465 RLG00000036466
rosa_multiflora	Rmu_sc0000307.1_g000006 Rmu_sc0000429.1_g000098 Rmu_sc0000573.1_g000028 Rmu_sc0000573.1_g000034 Rmu_sc0017298.1_g000004
rosa_rugosa	Rorug07G0226800
rosa_samantha	Rh3AG304800 Rh5AG487800 Rh5AG487900 Rh5BG508700 Rh5CG532600 Rh5DG521000 Rh7AG376600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	81
Acc16I	TGCGCA	1 cut(s)	231
AccII	CGCG	1 cut(s)	153
AciI	CCGC	4 cut(s)	99, 130, 160, 269
AclWI	GGATC	1 cut(s)	401
AcoI	YGGCCR	1 cut(s)	63
AfaI	GTAC	4 cut(s)	10, 139, 167, 178
AjnI	CCWGG	1 cut(s)	133
AleI	CACNNNNGTG	1 cut(s)	243
AluBI	AGCT	3 cut(s)	47, 199, 382
AluI	AGCT	3 cut(s)	47, 199, 382
AlwI	GGATC	1 cut(s)	401
AoxI	GGCC	1 cut(s)	63
ApeKI	GCWGC	2 cut(s)	199, 379
AspLEI	GCGC	1 cut(s)	232
AsuHPI	GGTGA	2 cut(s)	283, 413
BalI	TGGCCA	1 cut(s)	65
BbvI	GCAGC	2 cut(s)	186, 391
BccI	CCATC	2 cut(s)	268, 368
BcgI	CGANNNNNNTGC	6 cut(s)	5, 39, 358, 368, 392, 402
BciT130I	CCWGG	1 cut(s)	135
BciVI	GTATCC	1 cut(s)	316
BclI	TGATCA	1 cut(s)	189
BfuI	GTATCC	1 cut(s)	316
BisI	GCNGC	2 cut(s)	200, 380
BlsI	GCNGC	2 cut(s)	201, 381
BmcAI	AGTACT	1 cut(s)	178
Bme1390I	CCNGG	1 cut(s)	135
BmrFI	CCNGG	1 cut(s)	135
BpmI	CTGGAG	2 cut(s)	57, 123
BsaBI	GATNNNNATC	1 cut(s)	327
BsaJI	CCNNGG	2 cut(s)	50, 133
Bse1I	ACTGG	1 cut(s)	40
Bse3DI	GCAATG	1 cut(s)	278
Bse8I	GATNNNNATC	1 cut(s)	327
BseBI	CCWGG	1 cut(s)	135
BseDI	CCNNGG	2 cut(s)	50, 133
BseJI	GATNNNNATC	1 cut(s)	327
BseMI	GCAATG	1 cut(s)	278
BseMII	CTCAG	1 cut(s)	285
BseNI	ACTGG	1 cut(s)	40
BseXI	GCAGC	2 cut(s)	186, 391
Bsh1236I	CGCG	1 cut(s)	153
BshFI	GGCC	1 cut(s)	65
BsnI	GGCC	1 cut(s)	65
Bsp143I	GATC	5 cut(s)	181, 189, 247, 393, 403
Bsp68I	TCGCGA	1 cut(s)	153
BspACI	CCGC	4 cut(s)	99, 130, 160, 269
BspANI	GGCC	1 cut(s)	65
BspCNI	CTCAG	1 cut(s)	286
BspFNI	CGCG	1 cut(s)	153
BspPI	GGATC	1 cut(s)	401
BspQI	GCTCTTC	1 cut(s)	153
BsrDI	GCAATG	1 cut(s)	278
BsrI	ACTGG	1 cut(s)	40
BssECI	CCNNGG	2 cut(s)	50, 133
BssMI	GATC	5 cut(s)	181, 189, 247, 393, 403
BssT1I	CCWWGG	1 cut(s)	50
Bst2UI	CCWGG	1 cut(s)	135
Bst4CI	ACNGT	1 cut(s)	142
Bst6I	CTCTTC	2 cut(s)	50, 153
BstC8I	GCNNGC	2 cut(s)	25, 384
BstDEI	CTNAG	2 cut(s)	12, 294
BstFNI	CGCG	1 cut(s)	153
BstHHI	GCGC	1 cut(s)	232
BstKTI	GATC	5 cut(s)	184, 192, 250, 396, 406
BstMBI	GATC	5 cut(s)	181, 189, 247, 393, 403
BstMWI	GCNNNNNNNGC	3 cut(s)	159, 275, 296
BstNI	CCWGG	1 cut(s)	135
BstSCI	CCNGG	1 cut(s)	133
BstUI	CGCG	1 cut(s)	153
BstV1I	GCAGC	2 cut(s)	186, 391
BsuI	GTATCC	1 cut(s)	316
BsuRI	GGCC	1 cut(s)	65
BtuMI	TCGCGA	1 cut(s)	153
Cac8I	GCNNGC	2 cut(s)	25, 384
CfoI	GCGC	1 cut(s)	232
Csp6I	GTAC	4 cut(s)	9, 138, 166, 177
CspCI	CAANNNNNGTGG	2 cut(s)	55, 90
CviAII	CATG	3 cut(s)	266, 344, 364
CviQI	GTAC	4 cut(s)	9, 138, 166, 177
DdeI	CTNAG	2 cut(s)	12, 294
DpnI	GATC	5 cut(s)	183, 191, 249, 395, 405
DpnII	GATC	5 cut(s)	181, 189, 247, 393, 403
EaeI	YGGCCR	1 cut(s)	63
Eam1104I	CTCTTC	2 cut(s)	50, 153
EarI	CTCTTC	2 cut(s)	50, 153
Eco130I	CCWWGG	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	133
EcoT14I	CCWWGG	1 cut(s)	50
ErhI	CCWWGG	1 cut(s)	50
FaeI	CATG	3 cut(s)	269, 347, 367
FaiI	YATR	5 cut(s)	81, 267, 345, 365, 377
FatI	CATG	3 cut(s)	265, 343, 363
FbaI	TGATCA	1 cut(s)	189
Fnu4HI	GCNGC	2 cut(s)	200, 380
Fsp4HI	GCNGC	2 cut(s)	200, 380
FspI	TGCGCA	1 cut(s)	231
GlaI	GCGC	1 cut(s)	231
GluI	GCNGC	2 cut(s)	200, 380
GsuI	CTGGAG	2 cut(s)	57, 123
HaeIII	GGCC	1 cut(s)	65
HhaI	GCGC	1 cut(s)	232
Hin1II	CATG	3 cut(s)	269, 347, 367
Hin6I	GCGC	1 cut(s)	230
HinP1I	GCGC	1 cut(s)	230
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HinfI	GANTC	1 cut(s)	328
HphI	GGTGA	2 cut(s)	283, 413
Hpy166II	GTNNAC	1 cut(s)	33
Hpy188I	TCNGA	2 cut(s)	295, 390
Hpy188III	TCNNGA	5 cut(s)	152, 187, 193, 208, 221
Hpy8I	GTNNAC	1 cut(s)	33
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4V	TGCA	4 cut(s)	283, 347, 379, 409
HpyF10VI	GCNNNNNNNGC	3 cut(s)	159, 275, 296
HpyF3I	CTNAG	2 cut(s)	12, 294
Hsp92II	CATG	3 cut(s)	269, 347, 367
HspAI	GCGC	1 cut(s)	230
Ksp22I	TGATCA	1 cut(s)	189
Kzo9I	GATC	5 cut(s)	181, 189, 247, 393, 403
LguI	GCTCTTC	1 cut(s)	153
LmnI	GCTCC	1 cut(s)	52
Lsp1109I	GCAGC	2 cut(s)	186, 391
MaeIII	GTNAC	1 cut(s)	355
MalI	GATC	5 cut(s)	183, 191, 249, 395, 405
MboI	GATC	5 cut(s)	181, 189, 247, 393, 403
MboII	GAAGA	3 cut(s)	67, 124, 140
MlsI	TGGCCA	1 cut(s)	65
MluNI	TGGCCA	1 cut(s)	65
MnlI	CCTC	8 cut(s)	32, 98, 204, 280, 289, 303, 313, 384
Mox20I	TGGCCA	1 cut(s)	65
MscI	TGGCCA	1 cut(s)	65
MseI	TTAA	1 cut(s)	258
MslI	CAYNNNNRTG	1 cut(s)	243
Msp20I	TGGCCA	1 cut(s)	65
MspA1I	CMGCKG	2 cut(s)	101, 382
MspR9I	CCNGG	1 cut(s)	135
MvaI	CCWGG	1 cut(s)	135
MvnI	CGCG	1 cut(s)	153
MwoI	GCNNNNNNNGC	3 cut(s)	159, 275, 296
NdeII	GATC	5 cut(s)	181, 189, 247, 393, 403
NlaIII	CATG	3 cut(s)	269, 347, 367
NruI	TCGCGA	1 cut(s)	153
NsbI	TGCGCA	1 cut(s)	231
OliI	CACNNNNGTG	1 cut(s)	243
PciSI	GCTCTTC	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	328
PkrI	GCNGC	2 cut(s)	201, 381
PsiI	TTATAA	1 cut(s)	81
Psp6I	CCWGG	1 cut(s)	133
PspGI	CCWGG	1 cut(s)	133
PvuII	CAGCTG	1 cut(s)	382
RruI	TCGCGA	1 cut(s)	153
RsaI	GTAC	4 cut(s)	10, 139, 167, 178
RsaNI	GTAC	4 cut(s)	9, 138, 166, 177
RseI	CAYNNNNRTG	1 cut(s)	243
SapI	GCTCTTC	1 cut(s)	153
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	2 cut(s)	200, 380
Sau3AI	GATC	5 cut(s)	181, 189, 247, 393, 403
ScaI	AGTACT	1 cut(s)	178
ScrFI	CCNGG	1 cut(s)	135
SetI	ASST	5 cut(s)	49, 109, 201, 306, 384
SmiMI	CAYNNNNRTG	1 cut(s)	243
SsiI	CCGC	4 cut(s)	99, 130, 160, 269
StyD4I	CCNGG	1 cut(s)	133
StyI	CCWWGG	1 cut(s)	50
TaaI	ACNGT	1 cut(s)	142
TatI	WGTACW	1 cut(s)	176
TfiI	GAWTC	1 cut(s)	328
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TseI	GCWGC	2 cut(s)	199, 379
ZrmI	AGTACT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.