Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0008921

Physical Location & Seq

Genomic Coordinates Reverse (-)

37662863 .. 37683110

Gene Structure 20248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG304800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCCCGTACGAAGCAGACTGCACGGAAGTCCACCGGCGGCAAGGCTCCGAGGAAGCAACTGGCGACGAAGGCTGCCCGGAAGTCGGCCCCGACGACCGGAGGAGTGAAGAAGCCGCACAGGTACCGCCCTGGAACGGTGGCTCTACGTGAAATCCGAAAGTATCAGAAGAGCACGGAGCTGCTGATCAGGAAGCTTCCGTTCCAGAGGCTTGTTCGTGAAATCGCTCAGGACTTCAAGACGGACCTGCGTTTCCAGAGCCACGCGGTGTTGGCGCTGCAGGAGGCGGCGGAGGCCTACCTTGTTGGGCTCTTTGAGGATACTAATCTGTGCGCCATTCATGCCAAGCGAGTCACAATTATGCCCAAGGATATTCAACTTGCTAGGAGAATCAGGGGAAGCATAATACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000786 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031490 GO:0031491 GO:0031492 GO:0031497 GO:0032991 GO:0032993 GO:0034622 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044815 GO:0044877 GO:0051276 GO:0065003 GO:0065004 GO:0071103 GO:0071824 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05034 ko05202 ko05322 map05034 map05202 map05322

Pfam Domains

Protein Families

Histone

Protein Analysis

137

Amino Acids

15.5

Weight (kDa)

11.17

Isoelectric Point (pI)

39.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	44 - 131	1e-38	Core histone H2A/H2B/H3/H4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G40030
fragaria_vesca	FvH4_3g41380 FvH4_5g36680
rosa_chinensis	RchiOBHm_Chr5g0074301 RchiOBHm_Chr5g0074311 RchiOBHm_Chr7g0224881
rosa_laevigata	RLG00000000890 RLG00000036465 RLG00000036466
rosa_multiflora	Rmu_sc0000307.1_g000006 Rmu_sc0000429.1_g000098 Rmu_sc0000573.1_g000028 Rmu_sc0000573.1_g000034 Rmu_sc0017298.1_g000004
rosa_rugosa	Rorug07G0226800
rosa_samantha	Rh3AG304800 Rh5AG487800 Rh5AG487900 Rh5BG508700 Rh5CG532600 Rh5DG521000 Rh7AG376600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	255
Acc65I	GGTACC	1 cut(s)	123
AccB1I	GGYRCC	1 cut(s)	123
AccII	CGCG	1 cut(s)	266
AciI	CCGC	6 cut(s)	39, 116, 127, 266, 287, 290
AdeI	CACNNNGTG	1 cut(s)	268
AfaI	GTAC	2 cut(s)	10, 125
AfiI	CCNNNNNNNGG	3 cut(s)	85, 98, 136
AgsI	TTSAA	2 cut(s)	238, 377
AjnI	CCWGG	1 cut(s)	130
AluBI	AGCT	2 cut(s)	181, 196
AluI	AGCT	2 cut(s)	181, 196
Alw21I	GWGCWC	1 cut(s)	176
AoxI	GGCC	3 cut(s)	3, 87, 294
ApeKI	GCWGC	3 cut(s)	74, 181, 277
Asp718I	GGTACC	1 cut(s)	123
AspLEI	GCGC	2 cut(s)	277, 335
AspS9I	GGNCC	3 cut(s)	4, 88, 244
AsuC2I	CCSGG	1 cut(s)	79
AvaII	GGWCC	1 cut(s)	244
BanI	GGYRCC	1 cut(s)	123
BanII	GRGCYC	1 cut(s)	312
Bbv12I	GWGCWC	1 cut(s)	176
BbvI	GCAGC	3 cut(s)	61, 168, 264
BciT130I	CCWGG	1 cut(s)	132
BciVI	GTATCC	1 cut(s)	313
BclI	TGATCA	1 cut(s)	186
BcnI	CCSGG	1 cut(s)	79
BfaI	CTAG	1 cut(s)	384
BfmI	CTRYAG	1 cut(s)	278
BfoI	RGCGCY	1 cut(s)	278
BfuAI	ACCTGC	1 cut(s)	255
BfuI	GTATCC	1 cut(s)	313
BisI	GCNGC	6 cut(s)	40, 75, 116, 182, 278, 288
BlsI	GCNGC	6 cut(s)	41, 76, 117, 183, 279, 289
Bme1390I	CCNGG	2 cut(s)	79, 132
Bme18I	GGWCC	1 cut(s)	244
BmgT120I	GGNCC	3 cut(s)	4, 88, 244
BmiI	GGNNCC	3 cut(s)	48, 90, 125
BmrFI	CCNGG	2 cut(s)	79, 132
Bpu10I	CCTNAGC	1 cut(s)	228
BpuMI	CCSGG	1 cut(s)	79
BsaAI	YACGTR	1 cut(s)	149
BsaBI	GATNNNNATC	1 cut(s)	324
BsaJI	CCNNGG	3 cut(s)	50, 130, 366
BsaWI	WCCGGW	1 cut(s)	98
Bsc4I	CCNNNNNNNGG	3 cut(s)	85, 98, 136
Bse118I	RCCGGY	1 cut(s)	35
Bse1I	ACTGG	1 cut(s)	66
Bse8I	GATNNNNATC	1 cut(s)	324
BseBI	CCWGG	1 cut(s)	132
BseDI	CCNNGG	3 cut(s)	50, 130, 366
BseJI	GATNNNNATC	1 cut(s)	324
BseLI	CCNNNNNNNGG	3 cut(s)	85, 98, 136
BseMII	CTCAG	1 cut(s)	242
BseNI	ACTGG	1 cut(s)	66
BseRI	GAGGAG	1 cut(s)	117
BseXI	GCAGC	3 cut(s)	61, 168, 264
BsgI	GTGCAG	1 cut(s)	6
Bsh1236I	CGCG	1 cut(s)	266
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	3 cut(s)	5, 89, 296
BshNI	GGYRCC	1 cut(s)	123
BsiEI	CGRYCG	1 cut(s)	99
BsiHKAI	GWGCWC	1 cut(s)	176
BsiSI	CCGG	3 cut(s)	36, 79, 99
BsiWI	CGTACG	1 cut(s)	8
BslI	CCNNNNNNNGG	3 cut(s)	85, 98, 136
BsnI	GGCC	3 cut(s)	5, 89, 296
Bsp1286I	GDGCHC	2 cut(s)	176, 312
Bsp143I	GATC	1 cut(s)	186
BspACI	CCGC	6 cut(s)	39, 116, 127, 266, 287, 290
BspANI	GGCC	3 cut(s)	5, 89, 296
BspCNI	CTCAG	1 cut(s)	241
BspFNI	CGCG	1 cut(s)	266
BspLI	GGNNCC	3 cut(s)	48, 90, 125
BspMAI	CTGCAG	1 cut(s)	282
BspMI	ACCTGC	1 cut(s)	255
BspQI	GCTCTTC	1 cut(s)	164
BspT107I	GGYRCC	1 cut(s)	123
BsrFI	RCCGGY	1 cut(s)	35
BsrI	ACTGG	1 cut(s)	66
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	3 cut(s)	50, 130, 366
BssMI	GATC	1 cut(s)	186
BssT1I	CCWWGG	1 cut(s)	366
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	1 cut(s)	139
Bst6I	CTCTTC	1 cut(s)	164
BstBAI	YACGTR	1 cut(s)	149
BstDEI	CTNAG	1 cut(s)	228
BstFNI	CGCG	1 cut(s)	266
BstH2I	RGCGCY	1 cut(s)	278
BstHHI	GCGC	2 cut(s)	277, 335
BstKTI	GATC	1 cut(s)	189
BstMBI	GATC	1 cut(s)	186
BstMCI	CGRYCG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 272, 293, 341
BstNI	CCWGG	1 cut(s)	132
BstSCI	CCNGG	2 cut(s)	77, 130
BstSFI	CTRYAG	1 cut(s)	278
BstUI	CGCG	1 cut(s)	266
BstV1I	GCAGC	3 cut(s)	61, 168, 264
BsuI	GTATCC	1 cut(s)	313
BsuRI	GGCC	3 cut(s)	5, 89, 296
BveI	ACCTGC	1 cut(s)	255
CfoI	GCGC	2 cut(s)	277, 335
Cfr10I	RCCGGY	1 cut(s)	35
Cfr13I	GGNCC	3 cut(s)	4, 88, 244
Csp6I	GTAC	2 cut(s)	9, 124
CviAII	CATG	1 cut(s)	341
CviQI	GTAC	2 cut(s)	9, 124
DdeI	CTNAG	1 cut(s)	228
DpnI	GATC	1 cut(s)	188
DpnII	GATC	1 cut(s)	186
DraIII	CACNNNGTG	1 cut(s)	268
Eam1104I	CTCTTC	1 cut(s)	164
EarI	CTCTTC	1 cut(s)	164
EciI	GGCGGA	1 cut(s)	305
Eco130I	CCWWGG	1 cut(s)	366
Eco147I	AGGCCT	1 cut(s)	296
Eco24I	GRGCYC	1 cut(s)	312
Eco47I	GGWCC	1 cut(s)	244
EcoRII	CCWGG	1 cut(s)	130
EcoT14I	CCWWGG	1 cut(s)	366
EcoT38I	GRGCYC	1 cut(s)	312
ErhI	CCWWGG	1 cut(s)	366
FaeI	CATG	1 cut(s)	344
FaiI	YATR	3 cut(s)	342, 362, 404
FatI	CATG	1 cut(s)	340
FbaI	TGATCA	1 cut(s)	186
Fnu4HI	GCNGC	6 cut(s)	40, 75, 116, 182, 278, 288
FriOI	GRGCYC	1 cut(s)	312
Fsp4HI	GCNGC	6 cut(s)	40, 75, 116, 182, 278, 288
FspBI	CTAG	1 cut(s)	384
GlaI	GCGC	2 cut(s)	276, 334
GluI	GCNGC	6 cut(s)	40, 75, 116, 182, 278, 288
HaeII	RGCGCY	1 cut(s)	278
HaeIII	GGCC	3 cut(s)	5, 89, 296
HapII	CCGG	3 cut(s)	36, 79, 99
HhaI	GCGC	2 cut(s)	277, 335
Hin1II	CATG	1 cut(s)	344
Hin6I	GCGC	2 cut(s)	275, 333
HinP1I	GCGC	2 cut(s)	275, 333
HindIII	AAGCTT	1 cut(s)	194
HinfI	GANTC	2 cut(s)	351, 390
HpaII	CCGG	3 cut(s)	36, 79, 99
Hpy166II	GTNNAC	1 cut(s)	33
Hpy188I	TCNGA	3 cut(s)	51, 158, 168
Hpy188III	TCNNGA	6 cut(s)	190, 205, 218, 230, 238, 256
Hpy8I	GTNNAC	1 cut(s)	33
Hpy99I	CGWCG	2 cut(s)	70, 97
HpyAV	CCTTC	1 cut(s)	64
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4IV	ACGT	1 cut(s)	148
HpyCH4V	TGCA	2 cut(s)	23, 280
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 272, 293, 341
HpyF3I	CTNAG	1 cut(s)	228
HpySE526I	ACGT	1 cut(s)	148
Hsp92II	CATG	1 cut(s)	344
HspAI	GCGC	2 cut(s)	275, 333
KpnI	GGTACC	1 cut(s)	127
Ksp22I	TGATCA	1 cut(s)	186
Kzo9I	GATC	1 cut(s)	186
LguI	GCTCTTC	1 cut(s)	164
LmnI	GCTCC	2 cut(s)	52, 178
Lsp1109I	GCAGC	3 cut(s)	61, 168, 264
MaeI	CTAG	1 cut(s)	384
MaeII	ACGT	1 cut(s)	148
MaeIII	GTNAC	1 cut(s)	352
MalI	GATC	1 cut(s)	188
MboI	GATC	1 cut(s)	186
MboII	GAAGA	2 cut(s)	121, 181
MhlI	GDGCHC	2 cut(s)	176, 312
MluCI	AATT	1 cut(s)	357
MlyI	GAGTC	1 cut(s)	360
MnlI	CCTC	6 cut(s)	45, 95, 201, 277, 286, 310
MseI	TTAA	1 cut(s)	412
MslI	CAYNNNNRTG	1 cut(s)	359
MspI	CCGG	3 cut(s)	36, 79, 99
MspR9I	CCNGG	2 cut(s)	79, 132
MvaI	CCWGG	1 cut(s)	132
MvnI	CGCG	1 cut(s)	266
MwoI	GCNNNNNNNGC	4 cut(s)	71, 272, 293, 341
NciI	CCSGG	1 cut(s)	79
NdeII	GATC	1 cut(s)	186
NlaIII	CATG	1 cut(s)	344
NlaIV	GGNNCC	3 cut(s)	48, 90, 125
NmuCI	GTSAC	1 cut(s)	352
PceI	AGGCCT	1 cut(s)	296
PciSI	GCTCTTC	1 cut(s)	164
PcsI	WCGNNNNNNNCGW	2 cut(s)	92, 154
PfeI	GAWTC	1 cut(s)	390
Pfl23II	CGTACG	1 cut(s)	8
PkrI	GCNGC	6 cut(s)	41, 76, 117, 183, 279, 289
PleI	GAGTC	1 cut(s)	359
PpsI	GAGTC	1 cut(s)	359
Ppu21I	YACGTR	1 cut(s)	149
Psp6I	CCWGG	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	130
PspLI	CGTACG	1 cut(s)	8
PspN4I	GGNNCC	3 cut(s)	48, 90, 125
PspPI	GGNCC	3 cut(s)	4, 88, 244
PstI	CTGCAG	1 cut(s)	282
RsaI	GTAC	2 cut(s)	10, 125
RsaNI	GTAC	2 cut(s)	9, 124
RseI	CAYNNNNRTG	1 cut(s)	359
SapI	GCTCTTC	1 cut(s)	164
SaqAI	TTAA	1 cut(s)	412
SatI	GCNGC	6 cut(s)	40, 75, 116, 182, 278, 288
Sau3AI	GATC	1 cut(s)	186
Sau96I	GGNCC	3 cut(s)	4, 88, 244
SchI	GAGTC	1 cut(s)	360
ScrFI	CCNGG	2 cut(s)	79, 132
SduI	GDGCHC	2 cut(s)	176, 312
SetI	ASST	6 cut(s)	125, 151, 183, 198, 249, 303
SfcI	CTRYAG	1 cut(s)	278
SgrAI	CRCCGGYG	1 cut(s)	35
SinI	GGWCC	1 cut(s)	244
SmiMI	CAYNNNNRTG	1 cut(s)	359
Sse9I	AATT	1 cut(s)	357
SseBI	AGGCCT	1 cut(s)	296
SsiI	CCGC	6 cut(s)	39, 116, 127, 266, 287, 290
SspMI	CTAG	1 cut(s)	384
StuI	AGGCCT	1 cut(s)	296
StyD4I	CCNGG	2 cut(s)	77, 130
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	1 cut(s)	139
TaiI	ACGT	1 cut(s)	151
TasI	AATT	1 cut(s)	357
TauI	GCSGC	3 cut(s)	42, 118, 290
TfiI	GAWTC	1 cut(s)	390
Tru1I	TTAA	1 cut(s)	412
Tru9I	TTAA	1 cut(s)	412
TseFI	GTSAC	1 cut(s)	352
TseI	GCWGC	3 cut(s)	74, 181, 277
Tsp45I	GTSAC	1 cut(s)	352
TspDTI	ATGAA	1 cut(s)	329
TspGWI	ACGGA	4 cut(s)	40, 189, 191, 257
VpaK11BI	GGWCC	1 cut(s)	244
XspI	CTAG	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.