FvH4_3g41920

Bacterial extracellular solute-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0011078
Physical Location & Seq
Reverse (-)
35082408 .. 35089009
6602 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g41920.t1

Sequence Viewer

Length: 1026 bp
ATGGTGGCGGCTGCTGCTGCTGCTGCTGCTACATTGCTGCCATCACACATCTGGTCATGTTCCCATTACCAAAGCCCTAAGCTGAACCCCTCCTTCCCTCTCTGCCATCGCTCCAAGCGTAGCCTCACTCTCACACTTGTCTCTTCTGCTCACACTCTCACTCCGCCAGAGCCACCGCCTATCTCCACCTTCCCCCAGACCTTGCTTCGATTTGCCGCATCCGCTGCCCTTCTTCTTGGGCTTGGCCTCAGCTGCTGTGTTGCCTCGGCCCACTGTTCTCCTCTTCCTGTAGGCCAGCCTCCTCCAGCGCTACATGATCAAGCTACGGATGATAATGGCAATTTAGAATCGGCATTTGAAACTTGGAAGTCCAAGACATACGCTTTGACTGTCCCCTTGACAGTAGCTGCTCTACGTGGCTCTGTACCTCCTTCATGGATCAAGGATTTTATGCAGTCTCAAGGGAAAAGATCAAAGCTTCAACTCAAGTCTCATGCAAGTCTCGAGGGCGTGTTTTCGGAGCTCTCAATAGCCTTTAGCAAAGGCAATGTTCGGCCGTCATCTGTTGCGGCTGCTGATGTAGTTAGTATTGGGGACTCTTGGCTCGGTCATGCCATTAACAAGGGTCTAATTGAGCCAATTCAGGGGGTAGAAGACCAGGATTGGTATAAAGGATTGAGTGACAGATGGAAAGTATATTTACGCAGGAACTCTGAGGGGAGAATTGACCCTGATGGTAAAATATGGGCTGCTCCATATCGGTGGGGCTGCATTGTGATAGCATACAAAAAAACCAAATTTAGAAAGCATAATGTGGCTCCTATAACGGACTGGGCAGATTTATGGCGACCTGAACTTTCAGGGAGGATTTCAATGATTGATTCTCCTAGAGAGGTTATCGGTGCTGTCCTGAAGCATATGGGAACATCCTACAACACACAAGACATCCATTTGCAAGTTGACGGTGGGAGAGATGCTGTAAGGCAAAATCTGGCTTCACTTGGAAAACAGAAGCATTCTCTGTGA

Protein Analysis

342

Amino Acids

37.14

Weight (kDa)

9.34

Isoelectric Point (pI)

53.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBP_bac_1 PF01547 174 - 281 9e-06 Bacterial extracellular solute-binding protein
SBP_bac_8 PF13416 190 - 337 9.3e-08 Bacterial extracellular solute-binding protein
SBP_bac_6 PF13343 192 - 340 2.2e-12 Bacterial extracellular solute-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011078)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31410
fragaria_vesca FvH4_3g41920 FvH4_3g41920 FvH4_3g41920
malus_domestica MD07G1026800.v1.1
prunus_persica Prupe.2G060600_v2.0.a1 Prupe.2G060600_v2.0.a1
pyrus_communis pycom07g02020 pycom07g02060
rosa_chinensis RchiOBHm_Chr1g0331171
rosa_laevigata RLG00000029748
rosa_multiflora Rmu_sc0005711.1_g000003
rosa_roxburghii Rroxscaffold_4G00319290
rosa_rugosa Rorug01G0091900 Rorug01G0092000
rosa_samantha Rh1AG116000 Rh1BG087700 Rh1CG111500 Rh1DG120400
rosa_wichuraiana Rw1G009320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 8, 164, 176, 216, 222, 569
AclWI GGATC 1 cut(s) 446
AcoI YGGCCR 1 cut(s) 554
AcsI RAATTY 1 cut(s) 797
AcuI CTGAAG 1 cut(s) 932
AfaI GTAC 1 cut(s) 426
AfeI AGCGCT 1 cut(s) 309
AfiI CCNNNNNNNGG 1 cut(s) 644
AgsI TTSAA 3 cut(s) 359, 482, 873
AjnI CCWGG 1 cut(s) 657
AluBI AGCT 6 cut(s) 82, 252, 323, 407, 478, 523
AluI AGCT 6 cut(s) 82, 252, 323, 407, 478, 523
Alw21I GWGCWC 1 cut(s) 525
Alw26I GTCTC 4 cut(s) 145, 462, 495, 506
AlwI GGATC 1 cut(s) 446
AlwNI CAGNNNCTG 2 cut(s) 255, 407
Ama87I CYCGRG 1 cut(s) 503
Aor51HI AGCGCT 1 cut(s) 309
AoxI GGCC 4 cut(s) 244, 267, 292, 554
ApoI RAATTY 1 cut(s) 797
ArsI GACNNNNNNTTYG 2 cut(s) 367, 399
AspLEI GCGC 1 cut(s) 310
AspS9I GGNCC 1 cut(s) 268
AvaI CYCGRG 1 cut(s) 503
BanII GRGCYC 1 cut(s) 525
BbsI GAAGAC 1 cut(s) 660
Bbv12I GWGCWC 1 cut(s) 525
BbvCI CCTCAGC 1 cut(s) 248
BccI CCATC 4 cut(s) 49, 114, 681, 728
BceAI ACGGC 1 cut(s) 541
BciT130I CCWGG 1 cut(s) 659
BclI TGATCA 1 cut(s) 316
BcoDI GTCTC 4 cut(s) 145, 462, 495, 506
BfaI CTAG 1 cut(s) 888
BfmI CTRYAG 1 cut(s) 288
BfoI RGCGCY 1 cut(s) 311
Bme1390I CCNGG 1 cut(s) 659
BmeT110I CYCGRG 1 cut(s) 503
BmgT120I GGNCC 1 cut(s) 268
BmiI GGNNCC 1 cut(s) 819
BmrFI CCNGG 1 cut(s) 659
BmrI ACTGGG 1 cut(s) 841
BmsI GCATC 2 cut(s) 227, 964
BmuI ACTGGG 1 cut(s) 841
BpiI GAAGAC 1 cut(s) 660
BpmI CTGGAG 1 cut(s) 288
Bpu10I CCTNAGC 2 cut(s) 78, 248
BpuEI CTTGAG 2 cut(s) 444, 470
BsaAI YACGTR 1 cut(s) 416
BsaJI CCNNGG 1 cut(s) 264
BsaXI ACNNNNNCTCC 2 cut(s) 145, 175
Bsc4I CCNNNNNNNGG 1 cut(s) 644
Bse1I ACTGG 1 cut(s) 836
Bse3DI GCAATG 2 cut(s) 32, 553
BseBI CCWGG 1 cut(s) 659
BseDI CCNNGG 1 cut(s) 264
BseGI GGATG 4 cut(s) 218, 334, 926, 945
BseLI CCNNNNNNNGG 1 cut(s) 644
BseMI GCAATG 2 cut(s) 32, 553
BseMII CTCAG 2 cut(s) 262, 705
BseNI ACTGG 1 cut(s) 836
BseRI GAGGAG 2 cut(s) 270, 291
BseX3I CGGCCG 1 cut(s) 554
Bsh1285I CGRYCG 1 cut(s) 557
BshFI GGCC 4 cut(s) 246, 269, 294, 556
BsiEI CGRYCG 1 cut(s) 557
BsiHKAI GWGCWC 1 cut(s) 525
BsiHKCI CYCGRG 1 cut(s) 503
BslFI GGGAC 2 cut(s) 377, 608
BslI CCNNNNNNNGG 1 cut(s) 644
BsmAI GTCTC 4 cut(s) 145, 462, 495, 506
BsmFI GGGAC 2 cut(s) 377, 608
BsmI GAATGC 1 cut(s) 1015
BsnI GGCC 4 cut(s) 246, 269, 294, 556
BsoBI CYCGRG 1 cut(s) 503
Bsp1286I GDGCHC 1 cut(s) 525
Bsp143I GATC 3 cut(s) 316, 438, 470
BspACI CCGC 6 cut(s) 8, 164, 176, 216, 222, 569
BspANI GGCC 4 cut(s) 246, 269, 294, 556
BspCNI CTCAG 2 cut(s) 261, 706
BspLI GGNNCC 1 cut(s) 819
BspPI GGATC 1 cut(s) 446
BsrDI GCAATG 2 cut(s) 32, 553
BsrI ACTGG 1 cut(s) 836
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 3 cut(s) 316, 438, 470
Bst2UI CCWGG 1 cut(s) 659
Bst4CI ACNGT 4 cut(s) 275, 391, 403, 965
Bst6I CTCTTC 2 cut(s) 148, 288
BstAPI GCANNNNNTGC 1 cut(s) 224
BstBAI YACGTR 1 cut(s) 416
BstC8I GCNNGC 1 cut(s) 296
BstDEI CTNAG 3 cut(s) 78, 248, 714
BstF5I GGATG 4 cut(s) 218, 334, 926, 945
BstH2I RGCGCY 1 cut(s) 311
BstHHI GCGC 1 cut(s) 310
BstKTI GATC 3 cut(s) 319, 441, 473
BstMAI GTCTC 4 cut(s) 145, 462, 495, 506
BstMBI GATC 3 cut(s) 316, 438, 470
BstMCI CGRYCG 1 cut(s) 557
BstMWI GCNNNNNNNGC 8 cut(s) 14, 17, 20, 23, 26, 221, 224, 252
BstNI CCWGG 1 cut(s) 659
BstSCI CCNGG 1 cut(s) 657
BstSFI CTRYAG 1 cut(s) 288
BstV2I GAAGAC 1 cut(s) 660
BstXI CCANNNNNNTGG 1 cut(s) 762
BstZI CGGCCG 1 cut(s) 554
BsuRI GGCC 4 cut(s) 246, 269, 294, 556
BtgZI GCGATG 1 cut(s) 92
BtsCI GGATG 4 cut(s) 218, 334, 926, 945
BtsIMutI CAGTG 1 cut(s) 271
Cac8I GCNNGC 1 cut(s) 296
CaiI CAGNNNCTG 2 cut(s) 255, 407
CfoI GCGC 1 cut(s) 310
Cfr13I GGNCC 1 cut(s) 268
Csp6I GTAC 1 cut(s) 425
CviAII CATG 5 cut(s) 57, 314, 435, 494, 611
CviQI GTAC 1 cut(s) 425
DdeI CTNAG 3 cut(s) 78, 248, 714
DpnI GATC 3 cut(s) 318, 440, 472
DpnII GATC 3 cut(s) 316, 438, 470
EaeI YGGCCR 1 cut(s) 554
EagI CGGCCG 1 cut(s) 554
Eam1104I CTCTTC 2 cut(s) 148, 288
EarI CTCTTC 2 cut(s) 148, 288
EciI GGCGGA 1 cut(s) 153
Ecl136II GAGCTC 1 cut(s) 523
EclXI CGGCCG 1 cut(s) 554
Eco24I GRGCYC 1 cut(s) 525
Eco47III AGCGCT 1 cut(s) 309
Eco52I CGGCCG 1 cut(s) 554
Eco53kI GAGCTC 1 cut(s) 523
Eco57I CTGAAG 1 cut(s) 932
Eco88I CYCGRG 1 cut(s) 503
EcoICRI GAGCTC 1 cut(s) 523
EcoRII CCWGG 1 cut(s) 657
EcoT38I GRGCYC 1 cut(s) 525
FaeI CATG 5 cut(s) 60, 317, 438, 497, 614
FaqI GGGAC 2 cut(s) 377, 608
FatI CATG 5 cut(s) 56, 313, 434, 493, 610
FauNDI CATATG 1 cut(s) 918
FbaI TGATCA 1 cut(s) 316
FokI GGATG 4 cut(s) 205, 341, 913, 932
FriOI GRGCYC 1 cut(s) 525
FspBI CTAG 1 cut(s) 888
GlaI GCGC 1 cut(s) 309
GsuI CTGGAG 1 cut(s) 288
HaeII RGCGCY 1 cut(s) 311
HaeIII GGCC 4 cut(s) 246, 269, 294, 556
HhaI GCGC 1 cut(s) 310
Hin1II CATG 5 cut(s) 60, 317, 438, 497, 614
Hin6I GCGC 1 cut(s) 308
HinP1I GCGC 1 cut(s) 308
HincII GTYRAC 1 cut(s) 961
HindII GTYRAC 1 cut(s) 961
HindIII AAGCTT 1 cut(s) 476
HinfI GANTC 3 cut(s) 347, 596, 881
Hpy166II GTNNAC 1 cut(s) 961
Hpy188I TCNGA 2 cut(s) 520, 715
Hpy188III TCNNGA 2 cut(s) 503, 910
Hpy8I GTNNAC 1 cut(s) 961
HpyAV CCTTC 4 cut(s) 103, 199, 239, 441
HpyCH4III ACNGT 4 cut(s) 275, 391, 403, 965
HpyCH4IV ACGT 1 cut(s) 415
HpyCH4V TGCA 4 cut(s) 454, 497, 771, 955
HpyF10VI GCNNNNNNNGC 8 cut(s) 14, 17, 20, 23, 26, 221, 224, 252
HpyF3I CTNAG 3 cut(s) 78, 248, 714
HpySE526I ACGT 1 cut(s) 415
Hsp92II CATG 5 cut(s) 60, 317, 438, 497, 614
HspAI GCGC 1 cut(s) 308
Ksp22I TGATCA 1 cut(s) 316
Kzo9I GATC 3 cut(s) 316, 438, 470
LmnI GCTCC 4 cut(s) 116, 520, 757, 823
LweI GCATC 2 cut(s) 227, 964
MaeI CTAG 1 cut(s) 888
MaeII ACGT 1 cut(s) 415
MaeIII GTNAC 1 cut(s) 680
MalI GATC 3 cut(s) 318, 440, 472
MboI GATC 3 cut(s) 316, 438, 470
MboII GAAGA 4 cut(s) 135, 224, 275, 665
MhlI GDGCHC 1 cut(s) 525
MluCI AATT 5 cut(s) 340, 630, 639, 723, 797
MlyI GAGTC 1 cut(s) 590
MseI TTAA 1 cut(s) 618
MslI CAYNNNNRTG 1 cut(s) 760
MspA1I CMGCKG 2 cut(s) 224, 252
MspR9I CCNGG 1 cut(s) 659
Mva1269I GAATGC 1 cut(s) 1015
MvaI CCWGG 1 cut(s) 659
MwoI GCNNNNNNNGC 8 cut(s) 14, 17, 20, 23, 26, 221, 224, 252
NdeI CATATG 1 cut(s) 918
NdeII GATC 3 cut(s) 316, 438, 470
NlaIII CATG 5 cut(s) 60, 317, 438, 497, 614
NlaIV GGNNCC 1 cut(s) 819
NmeAIII GCCGAG 1 cut(s) 245
NmuCI GTSAC 1 cut(s) 680
PaeR7I CTCGAG 1 cut(s) 503
PcsI WCGNNNNNNNCGW 1 cut(s) 115
PctI GAATGC 1 cut(s) 1015
PfeI GAWTC 2 cut(s) 347, 881
PleI GAGTC 1 cut(s) 590
PpsI GAGTC 1 cut(s) 590
Ppu21I YACGTR 1 cut(s) 416
Psp124BI GAGCTC 1 cut(s) 525
Psp6I CCWGG 1 cut(s) 657
PspGI CCWGG 1 cut(s) 657
PspN4I GGNNCC 1 cut(s) 819
PspPI GGNCC 1 cut(s) 268
PstNI CAGNNNCTG 2 cut(s) 255, 407
PvuII CAGCTG 1 cut(s) 252
RsaI GTAC 1 cut(s) 426
RsaNI GTAC 1 cut(s) 425
RseI CAYNNNNRTG 1 cut(s) 760
SacI GAGCTC 1 cut(s) 525
SaqAI TTAA 1 cut(s) 618
Sau3AI GATC 3 cut(s) 316, 438, 470
Sau96I GGNCC 1 cut(s) 268
SchI GAGTC 1 cut(s) 590
ScrFI CCNGG 1 cut(s) 659
SduI GDGCHC 1 cut(s) 525
SfaNI GCATC 2 cut(s) 227, 964
SfcI CTRYAG 1 cut(s) 288
Sfr274I CTCGAG 1 cut(s) 503
SlaI CTCGAG 1 cut(s) 503
SmiMI CAYNNNNRTG 1 cut(s) 760
SmlI CTYRAG 3 cut(s) 459, 485, 503
SmoI CTYRAG 3 cut(s) 459, 485, 503
Sse9I AATT 5 cut(s) 340, 630, 639, 723, 797
SsiI CCGC 6 cut(s) 8, 164, 176, 216, 222, 569
SspMI CTAG 1 cut(s) 888
SstI GAGCTC 1 cut(s) 525
StyD4I CCNGG 1 cut(s) 657
TaaI ACNGT 4 cut(s) 275, 391, 403, 965
TaiI ACGT 1 cut(s) 418
TaqI TCGA 2 cut(s) 208, 504
TaqII GACCGA 1 cut(s) 596
TasI AATT 5 cut(s) 340, 630, 639, 723, 797
TauI GCSGC 3 cut(s) 11, 218, 572
TfiI GAWTC 2 cut(s) 347, 881
Tru1I TTAA 1 cut(s) 618
Tru9I TTAA 1 cut(s) 618
TscAI CASTG 1 cut(s) 278
TseFI GTSAC 1 cut(s) 680
Tsp45I GTSAC 1 cut(s) 680
TspDTI ATGAA 1 cut(s) 423
TspGWI ACGGA 2 cut(s) 341, 842
TspRI CASTG 1 cut(s) 278
XapI RAATTY 1 cut(s) 797
XcmI CCANNNNNNNNNTGG 1 cut(s) 48
XhoI CTCGAG 1 cut(s) 503
XspI CTAG 1 cut(s) 888
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.