pycom07g02020

Bacterial extracellular solute-binding protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Reverse (-)
1650723 .. 1653958
3236 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g02020.7

Sequence Viewer

Length: 1656 bp
ATGGCTGCTGCTGCGCTGGTGGTACCATCATACATCCCTTTCCCCTTAGACCGCTCTGGTCCCCATAGCTCTAAGCTCACCTTTTTCTTCTCTACCAAACCCCTACCAAGGTTCCACTATCATAGGCCTCTCACATTCTCTTGTGGCCTCAACCTCACTCCACATTTGCCAGTGCCAGAGCCTCCCACCTCCGTTGTGTCTCAAACCTTGGTTCGATTTGCTGCCTCCACTGCAGTCTTTGTTGGGCTTGGGCTTTGCTGTTGGGCCAGTTCGGCTCATTGTCGGCCTCTTCCTCTCGGCAAGCCTCAAGTGGTTCTAGAGGAGGAGCACACAGCTCAAGGTTTGTTTCGCATAACTGTAGTTTTTGAAATTGTACATTTGATGAGCACAGCCCAAGATGATGGAAATGAAGCTAAATCTGAAAGTTTGGAAAAATTGGAAGATAACAAGTTGGAAGCAGCATTTGCAGCTTGGAAGTCTAAGACTTATGCTTTGACAGTCCCTTTGAGACTTGCTGCTCTCCGCGGTTCTGTGCCTCCTTCATGGGTTAAGGATTTTATGCAATCTCAAGGAAAAAGATCAAAGGTTCACATGAAGTCGCATGCAAGCCTTGAGGGCATCTTTTCTGATCTATCAATGGCCTTTAGCAAAGGCAAAGTTGGGCCTTCATCTGTCGTCGCAGCTGACCTCGTTAGTGTTGGGGACTCTTGGCTCAGTTATGCCATTAGCAAGGCTGTGATTGAGCCCATACAAGGGGTAGAAGACCAGGACTGGTTTAAAGGCTTGAGTGACCGATGGAAAGTATATCTCCGCAGGAACTCTGAGGGGGGCATTGACGCTAAGGGTAAAGTATGGGCTGCGCCATATCGCTGGGGCTGCATGGTGATAGCATACAAAAAAAGTAAATTTCGAAAGCATAAGTTGGCTCCTGTAGAGGACTGGGCAGATTTATGGCGACCTGAACTTGCAGGGAAGATTTCTATGGTTGATTCTCCTAGAGAGGTTATTGGTGCAGTATTGAAGTATATGGGAGCATCATACAACACGAAACACATCCATTCGCAAGTTGACGGTGGGAGAGATGCTGCCAGGCAAAATCTGGCTTTACTTGTAAAGCAGGTCCGACTATTTGACAGTGTACATTATTTAAAAGCATTTGGGGTTGGAGATGTGTGGGTGGCTGTTGGGTGGAGCAGTGATGTTCTTCCTGTTGCCAAACGCATGTCTGATGTTGCAGTAATTGTTCCAAAATCTGGAGCTAGTATATGGGCGGATTTATGGGCAATCCCTGCCGCCAGTCGGCTTGAAACAAATCGAATTGGGGGGCGAGTTAGAGGGCCGTCTCCACTCATCCATCAATGGATGGAGTTCTGCTTGCAAACTGCTAGAACACTCCCTTTTAAGCAGGAGGTAATCCCAGGAGCTTCCCCTTCTGTGCTTGATAGTGCTCAGCCTGAAGATTTGAAAGAGCTCAAGGGTAAGCTGAAACTGGACACAAACCTCGTGGCAGGAGTACCGCCACCTGAGATTTTGGAAAGGTGTGAGTTTTTGGAGCCCTTAACTGAGTCTACGCTATCAGAATATCAATGGTTGATTGCTAGTATGCACAAACCTAGAGATGGTTTGATCACTAGTACGCGTGATAATATGTCATGA

Protein Analysis

552

Amino Acids

60.77

Weight (kDa)

9.08

Isoelectric Point (pI)

49.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0011078)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1108
Acc65I GGTACC 1 cut(s) 22
AccB1I GGYRCC 1 cut(s) 22
AccB7I CCANNNNNTGG 1 cut(s) 1253
AccBSI CCGCTC 1 cut(s) 54
AccI GTMKAC 1 cut(s) 1568
AccII CGCG 2 cut(s) 525, 1639
AciI CCGC 7 cut(s) 52, 523, 525, 811, 1271, 1293, 1517
AcsI RAATTY 1 cut(s) 905
AcuI CTGAAG 1 cut(s) 1476
AfaI GTAC 5 cut(s) 24, 375, 1140, 1515, 1636
AfiI CCNNNNNNNGG 6 cut(s) 108, 752, 753, 1253, 1299, 1619
AflIII ACRYGT 1 cut(s) 1637
AgsI TTSAA 4 cut(s) 368, 1021, 1307, 1465
AhlI ACTAGT 1 cut(s) 1631
AjnI CCWGG 3 cut(s) 765, 1088, 1417
Alw21I GWGCWC 4 cut(s) 330, 389, 1450, 1473
Alw26I GTCTC 3 cut(s) 204, 502, 1347
AoxI GGCC 7 cut(s) 125, 145, 264, 284, 639, 662, 1337
ApoI RAATTY 1 cut(s) 905
ArsI GACNNNNNNTTYG 4 cut(s) 475, 487, 507, 519
Asp718I GGTACC 1 cut(s) 22
AspLEI GCGC 2 cut(s) 16, 862
AspS9I GGNCC 5 cut(s) 59, 264, 662, 1120, 1337
AsuHPI GGTGA 2 cut(s) 70, 895
AsuII TTCGAA 1 cut(s) 910
AvaII GGWCC 2 cut(s) 59, 1120
BanI GGYRCC 1 cut(s) 22
BanII GRGCYC 3 cut(s) 747, 1473, 1557
BauI CACGAG 1 cut(s) 1502
BbsI GAAGAC 1 cut(s) 768
Bbv12I GWGCWC 4 cut(s) 330, 389, 1450, 1473
BbvI GCAGC 8 cut(s) 208, 470, 479, 502, 692, 844, 863, 1072
BccI CCATC 6 cut(s) 34, 395, 789, 1357, 1362, 1613
BceAI ACGGC 1 cut(s) 1324
BciT130I CCWGG 3 cut(s) 767, 1090, 1419
BclI TGATCA 1 cut(s) 1626
BcoDI GTCTC 3 cut(s) 204, 502, 1347
BcuI ACTAGT 1 cut(s) 1631
BfaI CTAG 7 cut(s) 317, 996, 1260, 1386, 1599, 1614, 1632
BfmI CTRYAG 3 cut(s) 231, 357, 930
BfuAI ACCTGC 1 cut(s) 1108
BglI GCCNNNNNGGC 2 cut(s) 272, 615
BlpI GCTNAGC 1 cut(s) 1449
Bme1390I CCNGG 3 cut(s) 767, 1090, 1419
Bme18I GGWCC 2 cut(s) 59, 1120
BmgT120I GGNCC 5 cut(s) 59, 264, 662, 1120, 1337
BmiI GGNNCC 5 cut(s) 24, 61, 113, 927, 1554
BmrFI CCNGG 3 cut(s) 767, 1090, 1419
BmrI ACTGGG 1 cut(s) 949
BmsI GCATC 3 cut(s) 627, 1043, 1072
BmuI ACTGGG 1 cut(s) 949
BpiI GAAGAC 1 cut(s) 768
BpmI CTGGAG 1 cut(s) 1275
Bpu10I CCTNAGC 1 cut(s) 840
Bpu1102I GCTNAGC 1 cut(s) 1449
Bpu14I TTCGAA 1 cut(s) 910
BpuEI CTTGAG 6 cut(s) 291, 321, 552, 632, 805, 1457
BsaJI CCNNGG 4 cut(s) 107, 207, 523, 1417
Bsc4I CCNNNNNNNGG 6 cut(s) 108, 752, 753, 1253, 1299, 1619
Bse1I ACTGG 6 cut(s) 170, 267, 776, 944, 1296, 1494
BseBI CCWGG 3 cut(s) 767, 1090, 1419
BseDI CCNNGG 4 cut(s) 107, 207, 523, 1417
BseGI GGATG 4 cut(s) 33, 1053, 1350, 1368
BseLI CCNNNNNNNGG 6 cut(s) 108, 752, 753, 1253, 1299, 1619
BseMII CTCAG 5 cut(s) 727, 813, 1463, 1515, 1554
BseNI ACTGG 6 cut(s) 170, 267, 776, 944, 1296, 1494
BseRI GAGGAG 2 cut(s) 335, 338
BseXI GCAGC 8 cut(s) 208, 470, 479, 502, 692, 844, 863, 1072
BseYI CCCAGC 1 cut(s) 870
BsgI GTGCAG 1 cut(s) 1032
Bsh1236I CGCG 2 cut(s) 525, 1639
BshFI GGCC 7 cut(s) 127, 147, 266, 286, 641, 664, 1339
BshNI GGYRCC 1 cut(s) 22
BsiHKAI GWGCWC 4 cut(s) 330, 389, 1450, 1473
BslFI GGGAC 3 cut(s) 45, 485, 716
BslI CCNNNNNNNGG 6 cut(s) 108, 752, 753, 1253, 1299, 1619
BsmAI GTCTC 3 cut(s) 204, 502, 1347
BsmBI CGTCTC 1 cut(s) 1347
BsmFI GGGAC 3 cut(s) 45, 485, 716
BsnI GGCC 7 cut(s) 127, 147, 266, 286, 641, 664, 1339
Bsp119I TTCGAA 1 cut(s) 910
Bsp1286I GDGCHC 6 cut(s) 330, 389, 747, 1450, 1473, 1557
Bsp1407I TGTACA 2 cut(s) 373, 1138
Bsp143I GATC 3 cut(s) 578, 628, 1626
Bsp1720I GCTNAGC 1 cut(s) 1449
BspACI CCGC 7 cut(s) 52, 523, 525, 811, 1271, 1293, 1517
BspANI GGCC 7 cut(s) 127, 147, 266, 286, 641, 664, 1339
BspCNI CTCAG 5 cut(s) 726, 814, 1462, 1516, 1555
BspFNI CGCG 2 cut(s) 525, 1639
BspHI TCATGA 1 cut(s) 1652
BspLI GGNNCC 5 cut(s) 24, 61, 113, 927, 1554
BspMAI CTGCAG 1 cut(s) 235
BspMI ACCTGC 1 cut(s) 1108
BspT104I TTCGAA 1 cut(s) 910
BspT107I GGYRCC 1 cut(s) 22
BsrBI CCGCTC 1 cut(s) 54
BsrGI TGTACA 2 cut(s) 373, 1138
BsrI ACTGG 6 cut(s) 170, 267, 776, 944, 1296, 1494
BssECI CCNNGG 4 cut(s) 107, 207, 523, 1417
BssMI GATC 3 cut(s) 578, 628, 1626
BssSI CACGAG 1 cut(s) 1502
BssT1I CCWWGG 2 cut(s) 107, 207
Bst2BI CACGAG 1 cut(s) 1502
Bst2UI CCWGG 3 cut(s) 767, 1090, 1419
Bst4CI ACNGT 4 cut(s) 358, 499, 1073, 1136
Bst6I CTCTTC 1 cut(s) 294
BstAPI GCANNNNNTGC 2 cut(s) 464, 1289
BstAUI TGTACA 2 cut(s) 373, 1138
BstBI TTCGAA 1 cut(s) 910
BstC8I GCNNGC 4 cut(s) 302, 603, 607, 1376
BstDEI CTNAG 9 cut(s) 46, 72, 480, 713, 822, 840, 1449, 1524, 1563
BstDSI CCRYGG 1 cut(s) 523
BstF5I GGATG 4 cut(s) 33, 1053, 1350, 1368
BstFNI CGCG 2 cut(s) 525, 1639
BstHHI GCGC 2 cut(s) 16, 862
BstKTI GATC 3 cut(s) 581, 631, 1629
BstMAI GTCTC 3 cut(s) 204, 502, 1347
BstMBI GATC 3 cut(s) 578, 628, 1626
BstMWI GCNNNNNNNGC 8 cut(s) 11, 230, 272, 464, 467, 615, 876, 1289
BstNI CCWGG 3 cut(s) 767, 1090, 1419
BstNSI RCATGY 2 cut(s) 605, 1225
BstSCI CCNGG 3 cut(s) 765, 1088, 1417
BstSFI CTRYAG 3 cut(s) 231, 357, 930
BstUI CGCG 2 cut(s) 525, 1639
BstV1I GCAGC 8 cut(s) 208, 470, 479, 502, 692, 844, 863, 1072
BstV2I GAAGAC 1 cut(s) 768
BstXI CCANNNNNNTGG 2 cut(s) 401, 870
BsuRI GGCC 7 cut(s) 127, 147, 266, 286, 641, 664, 1339
BtgI CCRYGG 1 cut(s) 523
BtsCI GGATG 4 cut(s) 33, 1053, 1350, 1368
BtsI GCAGTG 2 cut(s) 228, 1201
BtsIMutI CAGTG 4 cut(s) 177, 228, 1141, 1201
BveI ACCTGC 1 cut(s) 1108
Cac8I GCNNGC 4 cut(s) 302, 603, 607, 1376
CciI TCATGA 1 cut(s) 1652
CfoI GCGC 2 cut(s) 16, 862
Cfr13I GGNCC 5 cut(s) 59, 264, 662, 1120, 1337
Cfr42I CCGCGG 1 cut(s) 526
CseI GACGC 1 cut(s) 845
Csp6I GTAC 5 cut(s) 23, 374, 1139, 1514, 1635
CspCI CAANNNNNGTGG 4 cut(s) 175, 210, 1485, 1520
CviAII CATG 6 cut(s) 543, 592, 602, 880, 1222, 1653
CviQI GTAC 5 cut(s) 23, 374, 1139, 1514, 1635
DdeI CTNAG 9 cut(s) 46, 72, 480, 713, 822, 840, 1449, 1524, 1563
DpnI GATC 3 cut(s) 580, 630, 1628
DpnII GATC 3 cut(s) 578, 628, 1626
DraI TTTAAA 2 cut(s) 778, 1149
Eam1104I CTCTTC 1 cut(s) 294
EarI CTCTTC 1 cut(s) 294
EciI GGCGGA 1 cut(s) 1286
Ecl136II GAGCTC 1 cut(s) 1471
Eco130I CCWWGG 2 cut(s) 107, 207
Eco147I AGGCCT 1 cut(s) 127
Eco24I GRGCYC 3 cut(s) 747, 1473, 1557
Eco47I GGWCC 2 cut(s) 59, 1120
Eco53kI GAGCTC 1 cut(s) 1471
Eco57I CTGAAG 1 cut(s) 1476
EcoICRI GAGCTC 1 cut(s) 1471
EcoRII CCWGG 3 cut(s) 765, 1088, 1417
EcoT14I CCWWGG 2 cut(s) 107, 207
EcoT38I GRGCYC 3 cut(s) 747, 1473, 1557
ErhI CCWWGG 2 cut(s) 107, 207
Esp3I CGTCTC 1 cut(s) 1347
FaeI CATG 6 cut(s) 546, 595, 605, 883, 1225, 1656
FalI AAGNNNNNCTT 2 cut(s) 65, 97
FaqI GGGAC 3 cut(s) 45, 485, 716
FatI CATG 6 cut(s) 542, 591, 601, 879, 1221, 1652
FbaI TGATCA 1 cut(s) 1626
FblI GTMKAC 1 cut(s) 1568
FokI GGATG 4 cut(s) 20, 1040, 1337, 1375
FriOI GRGCYC 3 cut(s) 747, 1473, 1557
FspBI CTAG 7 cut(s) 317, 996, 1260, 1386, 1599, 1614, 1632
GlaI GCGC 2 cut(s) 15, 861
GsaI CCCAGC 1 cut(s) 874
GsuI CTGGAG 1 cut(s) 1275
HaeIII GGCC 7 cut(s) 127, 147, 266, 286, 641, 664, 1339
HgaI GACGC 1 cut(s) 845
HhaI GCGC 2 cut(s) 16, 862
Hin1II CATG 6 cut(s) 546, 595, 605, 883, 1225, 1656
Hin6I GCGC 2 cut(s) 14, 860
HinP1I GCGC 2 cut(s) 14, 860
HincII GTYRAC 1 cut(s) 1069
HindII GTYRAC 1 cut(s) 1069
HinfI GANTC 3 cut(s) 704, 989, 1565
HphI GGTGA 2 cut(s) 70, 895
Hpy166II GTNNAC 4 cut(s) 589, 1069, 1139, 1569
Hpy188I TCNGA 6 cut(s) 421, 628, 823, 1124, 1228, 1579
Hpy188III TCNNGA 3 cut(s) 317, 1254, 1653
Hpy8I GTNNAC 4 cut(s) 589, 1069, 1139, 1569
Hpy99I CGWCG 1 cut(s) 680
HpyAV CCTTC 3 cut(s) 549, 675, 1440
HpyCH4III ACNGT 4 cut(s) 358, 499, 1073, 1136
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 230, 272, 464, 467, 615, 876, 1289
HpyF3I CTNAG 9 cut(s) 46, 72, 480, 713, 822, 840, 1449, 1524, 1563
Hsp92II CATG 6 cut(s) 546, 595, 605, 883, 1225, 1656
HspAI GCGC 2 cut(s) 14, 860
KpnI GGTACC 1 cut(s) 26
Ksp22I TGATCA 1 cut(s) 1626
KspI CCGCGG 1 cut(s) 526
Kzo9I GATC 3 cut(s) 578, 628, 1626
LmnI GCTCC 7 cut(s) 325, 931, 1031, 1191, 1256, 1421, 1552
Lsp1109I GCAGC 8 cut(s) 208, 470, 479, 502, 692, 844, 863, 1072
LweI GCATC 3 cut(s) 627, 1043, 1072
MaeI CTAG 7 cut(s) 317, 996, 1260, 1386, 1599, 1614, 1632
MaeIII GTNAC 1 cut(s) 788
MalI GATC 3 cut(s) 580, 630, 1628
MbiI CCGCTC 1 cut(s) 54
MboI GATC 3 cut(s) 578, 628, 1626
MboII GAAGA 7 cut(s) 79, 281, 452, 773, 985, 1196, 1469
MhlI GDGCHC 6 cut(s) 330, 389, 747, 1450, 1473, 1557
MluCI AATT 5 cut(s) 369, 434, 905, 1239, 1317
MluI ACGCGT 1 cut(s) 1637
MlyI GAGTC 2 cut(s) 698, 1574
MmeI TCCRAC 3 cut(s) 432, 1144, 1147
MseI TTAA 5 cut(s) 549, 777, 1148, 1401, 1559
MspA1I CMGCKG 2 cut(s) 525, 683
MspR9I CCNGG 3 cut(s) 767, 1090, 1419
MvaI CCWGG 3 cut(s) 767, 1090, 1419
MvnI CGCG 2 cut(s) 525, 1639
MwoI GCNNNNNNNGC 8 cut(s) 11, 230, 272, 464, 467, 615, 876, 1289
NdeII GATC 3 cut(s) 578, 628, 1626
NlaIII CATG 6 cut(s) 546, 595, 605, 883, 1225, 1656
NlaIV GGNNCC 5 cut(s) 24, 61, 113, 927, 1554
NmeAIII GCCGAG 1 cut(s) 276
NmuCI GTSAC 1 cut(s) 788
NspI RCATGY 2 cut(s) 605, 1225
NspV TTCGAA 1 cut(s) 910
PaeI GCATGC 1 cut(s) 605
PagI TCATGA 1 cut(s) 1652
PceI AGGCCT 1 cut(s) 127
PfeI GAWTC 1 cut(s) 989
PflMI CCANNNNNTGG 1 cut(s) 1253
PleI GAGTC 2 cut(s) 698, 1573
PpsI GAGTC 2 cut(s) 698, 1573
Psp124BI GAGCTC 1 cut(s) 1473
Psp6I CCWGG 3 cut(s) 765, 1088, 1417
PspFI CCCAGC 1 cut(s) 870
PspGI CCWGG 3 cut(s) 765, 1088, 1417
PspN4I GGNNCC 5 cut(s) 24, 61, 113, 927, 1554
PspPI GGNCC 5 cut(s) 59, 264, 662, 1120, 1337
PstI CTGCAG 1 cut(s) 235
PvuII CAGCTG 1 cut(s) 683
RsaI GTAC 5 cut(s) 24, 375, 1140, 1515, 1636
RsaNI GTAC 5 cut(s) 23, 374, 1139, 1514, 1635
SacI GAGCTC 1 cut(s) 1473
SacII CCGCGG 1 cut(s) 526
SaqAI TTAA 5 cut(s) 549, 777, 1148, 1401, 1559
Sau3AI GATC 3 cut(s) 578, 628, 1626
Sau96I GGNCC 5 cut(s) 59, 264, 662, 1120, 1337
SchI GAGTC 2 cut(s) 698, 1574
ScrFI CCNGG 3 cut(s) 767, 1090, 1419
SduI GDGCHC 6 cut(s) 330, 389, 747, 1450, 1473, 1557
SfaNI GCATC 3 cut(s) 627, 1043, 1072
SfcI CTRYAG 3 cut(s) 231, 357, 930
Sfr303I CCGCGG 1 cut(s) 526
SfuI TTCGAA 1 cut(s) 910
SgrBI CCGCGG 1 cut(s) 526
SinI GGWCC 2 cut(s) 59, 1120
SmlI CTYRAG 6 cut(s) 306, 336, 567, 611, 784, 1472
SmoI CTYRAG 6 cut(s) 306, 336, 567, 611, 784, 1472
SpeI ACTAGT 1 cut(s) 1631
SphI GCATGC 1 cut(s) 605
Sse9I AATT 5 cut(s) 369, 434, 905, 1239, 1317
SseBI AGGCCT 1 cut(s) 127
SsiI CCGC 7 cut(s) 52, 523, 525, 811, 1271, 1293, 1517
SspMI CTAG 7 cut(s) 317, 996, 1260, 1386, 1599, 1614, 1632
SstI GAGCTC 1 cut(s) 1473
StuI AGGCCT 1 cut(s) 127
StyD4I CCNGG 3 cut(s) 765, 1088, 1417
StyI CCWWGG 2 cut(s) 107, 207
TaaI ACNGT 4 cut(s) 358, 499, 1073, 1136
TaqI TCGA 3 cut(s) 214, 910, 1315
TaqII GACCGA 1 cut(s) 807
TasI AATT 5 cut(s) 369, 434, 905, 1239, 1317
TatI WGTACW 2 cut(s) 373, 1138
TauI GCSGC 1 cut(s) 1295
TfiI GAWTC 1 cut(s) 989
Tru1I TTAA 5 cut(s) 549, 777, 1148, 1401, 1559
Tru9I TTAA 5 cut(s) 549, 777, 1148, 1401, 1559
TscAI CASTG 4 cut(s) 177, 235, 1141, 1201
TseFI GTSAC 1 cut(s) 788
Tsp45I GTSAC 1 cut(s) 788
TspDTI ATGAA 4 cut(s) 423, 531, 608, 657
TspGWI ACGGA 1 cut(s) 181
TspRI CASTG 4 cut(s) 177, 235, 1141, 1201
Van91I CCANNNNNTGG 1 cut(s) 1253
VpaK11BI GGWCC 2 cut(s) 59, 1120
XapI RAATTY 1 cut(s) 905
XbaI TCTAGA 1 cut(s) 316
XceI RCATGY 2 cut(s) 605, 1225
XcmI CCANNNNNNNNNTGG 1 cut(s) 1096
XmiI GTMKAC 1 cut(s) 1568
XspI CTAG 7 cut(s) 317, 996, 1260, 1386, 1599, 1614, 1632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.