Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0011078

Physical Location & Seq

Genomic Coordinates Forward (+)

20498389 .. 20502950

Gene Structure 4562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G009320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

ATGGCTACTGCTCTATTGCTGCCGTCACGCATCTGTTTCCCTTTGGATCCCTCATGTTCCCAATTCCAAAGCCCTAACCTTAATCCCTCCTTCCCTCTCCGCCGTCGCTCTAACCATACTCATAGGCTCACTCTCACACTCGTCTCTTCTGCCCACACTCTCACTCCGCCGGAGCCGCCGCCGCCTCCTACTTCCACCACCGTCCCTCACACCTTGCTTCGGTTCGCCGCCTCCGCCGCCCTCCTTCTCGGGATTGGGCTCGGATGCTGCGTCGCCTCCGCCCGCTCTTCTCCTCTAGCCCAGCCTCTGCCGGTGCTACAGGATCAAGCTACGGATGATGACAATGTAGAAGCGGCGTTTGGAACTTGGAAGTCCAAGACATTCGCTTTGACTGTGCCCTTGACAGTTGCAGCTCTACGCGGCTCTGTACCTCCTTCATGGATTAGGGATTTTATGCAGTCTCAAGGAAAAAGATCAAAGCTTCAACTCAAGTCTCATGCAAGTCTCGAGAGCGTGTTTTCGGATCTCTCAAGAGACTTGAGCAAAGGCGATGTTCGGCCTTCTTCTGTTGCGGCTGCTGATGTAGTTAGTATTGGGGACTCTTGGCTCAGTCATGCCATTAACAAGGGTCTAATTGAGCCAATTCAAGGGGTAGAAGACCAGGATTGGTATAAAGGATTGAGTGACAGATGGAAAGTATATCTACGCAGGAACTCTGAGGGAAGAATTGACCCTGATGGTAAAATATGGGCTGCTCCATATCGGTGGGGCTGCATGGTGATAGCATACAAAAAAACTAAATTTAGAAAGCATAACTTGGCTCCAATATCGGACTGGGCAGATTTATGGCGACCTGAACTTGCAGGAAGGATTTCAATGGTTGATTCTTCTAGAGAAGTTATCGGTGCAGTTCTGAAGCATATGGGAACCTCCTACAACACGCAAGATATCCATTTGCAAGTTGATGGTGGGAAAGATGCTGTAAGGCAAAATCTGGCTTTACTTGGAAAACAGGTCCAACTATTTGACAGTGTACACTATTTGAAAGCATTTGCGGTTGGAGATGTGTGGGTGGCTGTCGGGTGGAGCAGTGATGTTCTTCCTGTTGCCAAACGCATGTCTGATGTTGCAGTAATTGTTCCGAAATCTGGAACTAGTATATGGGCAGATATGTGGGTACGTTCTGCATCATGTTGTGTTACTGAGATATTTGCTTTCTTCTCTTGCTTTCTTCTCCTAGATGTCATGTTACATATTCCTTTTTCTTTTTCTTTTTTTCCTAGGCAACCCCTGCTGTCTCTCGACTTGAAACAAATCGAATTGGGGGGCGAGTTAGAGGGCCATCTCCACTCATCCATCAGTGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0015695 GO:0015696 GO:0015846 GO:0015847 GO:0019808 GO:0019810 GO:0030288 GO:0030313 GO:0031975 GO:0042597 GO:0043167 GO:0043169 GO:0044464 GO:0051179 GO:0051234 GO:0070405 GO:0071702 GO:0071705

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP_bac_6

Protein Analysis

455

Amino Acids

50.0

Weight (kDa)

8.71

Isoelectric Point (pI)

55.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBP_bac_8	PF13416	191 - 395	4.9e-17	Bacterial extracellular solute-binding protein
SBP_bac_11	PF13531	192 - 367	2.7e-06	Bacterial extracellular solute-binding protein
SBP_bac_6	PF13343	193 - 397	2.8e-22	Bacterial extracellular solute-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31410
fragaria_vesca	FvH4_3g41920 FvH4_3g41920 FvH4_3g41920
malus_domestica	MD07G1026800.v1.1
prunus_persica	Prupe.2G060600_v2.0.a1 Prupe.2G060600_v2.0.a1
pyrus_communis	pycom07g02020 pycom07g02060
rosa_chinensis	RchiOBHm_Chr1g0331171
rosa_laevigata	RLG00000029748
rosa_multiflora	Rmu_sc0005711.1_g000003
rosa_roxburghii	Rroxscaffold_4G00319290
rosa_rugosa	Rorug01G0091900 Rorug01G0092000
rosa_samantha	Rh1AG116000 Rh1BG087700 Rh1CG111500 Rh1DG120400
rosa_wichuraiana	Rw1G009320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	285
AccII	CGCG	1 cut(s)	420
AclWI	GGATC	4 cut(s)	41, 54, 330, 531
AcsI	RAATTY	1 cut(s)	800
AcuI	CTGAAG	1 cut(s)	935
AfaI	GTAC	3 cut(s)	429, 1035, 1179
AfiI	CCNNNNNNNGG	3 cut(s)	219, 647, 1148
AgsI	TTSAA	5 cut(s)	485, 647, 876, 1045, 1309
AhlI	ACTAGT	1 cut(s)	1154
AjnI	CCWGG	1 cut(s)	660
AjuI	GAANNNNNNNTTGG	2 cut(s)	342, 374
AluBI	AGCT	3 cut(s)	329, 413, 481
AluI	AGCT	3 cut(s)	329, 413, 481
Alw26I	GTCTC	6 cut(s)	148, 465, 498, 509, 528, 1302
AlwI	GGATC	4 cut(s)	41, 54, 330, 531
AlwNI	CAGNNNCTG	1 cut(s)	307
Ama87I	CYCGRG	2 cut(s)	248, 506
AoxI	GGCC	2 cut(s)	557, 1339
ApeKI	GCWGC	6 cut(s)	19, 267, 410, 575, 752, 771
ApoI	RAATTY	1 cut(s)	800
ArsI	GACNNNNNNTTYG	2 cut(s)	370, 402
Asp700I	GAANNNNTTC	1 cut(s)	871
AspA2I	CCTAGG	1 cut(s)	1280
AspS9I	GGNCC	2 cut(s)	1015, 1339
AsuHPI	GGTGA	1 cut(s)	790
AvaI	CYCGRG	2 cut(s)	248, 506
AvaII	GGWCC	1 cut(s)	1015
AvrII	CCTAGG	1 cut(s)	1280
BaeGI	GKGCMC	1 cut(s)	399
BamHI	GGATCC	1 cut(s)	46
BanII	GRGCYC	1 cut(s)	261
BbsI	GAAGAC	1 cut(s)	663
BbvI	GCAGC	6 cut(s)	6, 254, 422, 562, 739, 758
BccI	CCATC	5 cut(s)	684, 731, 959, 1350, 1364
BceAI	ACGGC	2 cut(s)	7, 87
BciT130I	CCWGG	1 cut(s)	662
BcoDI	GTCTC	6 cut(s)	148, 465, 498, 509, 528, 1302
BcuI	ACTAGT	1 cut(s)	1154
BfaI	CTAG	5 cut(s)	296, 891, 1155, 1238, 1281
BfmI	CTRYAG	1 cut(s)	317
BlnI	CCTAGG	1 cut(s)	1280
Bme1390I	CCNGG	1 cut(s)	662
Bme18I	GGWCC	1 cut(s)	1015
BmeT110I	CYCGRG	2 cut(s)	248, 506
BmgT120I	GGNCC	2 cut(s)	1015, 1339
BmiI	GGNNCC	4 cut(s)	48, 174, 822, 928
BmrFI	CCNGG	1 cut(s)	662
BmrI	ACTGGG	1 cut(s)	844
BmsI	GCATC	4 cut(s)	39, 254, 967, 1196
BmuI	ACTGGG	1 cut(s)	844
BpiI	GAAGAC	1 cut(s)	663
BpuEI	CTTGAG	4 cut(s)	447, 473, 514, 559
BsaJI	CCNNGG	1 cut(s)	1280
BsaXI	ACNNNNNCTCC	2 cut(s)	148, 178
Bsc4I	CCNNNNNNNGG	3 cut(s)	219, 647, 1148
Bse118I	RCCGGY	1 cut(s)	310
Bse1I	ACTGG	1 cut(s)	839
BseBI	CCWGG	1 cut(s)	662
BseDI	CCNNGG	1 cut(s)	1280
BseGI	GGATG	3 cut(s)	269, 340, 1352
BseLI	CCNNNNNNNGG	3 cut(s)	219, 647, 1148
BseMII	CTCAG	3 cut(s)	622, 708, 1194
BseNI	ACTGG	1 cut(s)	839
BseRI	GAGGAG	1 cut(s)	282
BseSI	GKGCMC	1 cut(s)	399
BseXI	GCAGC	6 cut(s)	6, 254, 422, 562, 739, 758
BseYI	CCCAGC	1 cut(s)	300
BsgI	GTGCAG	1 cut(s)	927
Bsh1236I	CGCG	1 cut(s)	420
BshFI	GGCC	2 cut(s)	559, 1341
BsiHKCI	CYCGRG	2 cut(s)	248, 506
BsiSI	CCGG	2 cut(s)	170, 311
BslFI	GGGAC	2 cut(s)	188, 611
BslI	CCNNNNNNNGG	3 cut(s)	219, 647, 1148
BsmAI	GTCTC	6 cut(s)	148, 465, 498, 509, 528, 1302
BsmBI	CGTCTC	1 cut(s)	148
BsmFI	GGGAC	2 cut(s)	188, 611
BsnI	GGCC	2 cut(s)	559, 1341
BsoBI	CYCGRG	2 cut(s)	248, 506
Bsp1286I	GDGCHC	2 cut(s)	261, 399
Bsp1407I	TGTACA	1 cut(s)	1033
Bsp143I	GATC	4 cut(s)	46, 322, 473, 523
BspANI	GGCC	2 cut(s)	559, 1341
BspCNI	CTCAG	3 cut(s)	621, 709, 1195
BspFNI	CGCG	1 cut(s)	420
BspLI	GGNNCC	4 cut(s)	48, 174, 822, 928
BspPI	GGATC	4 cut(s)	41, 54, 330, 531
BspQI	GCTCTTC	1 cut(s)	292
BsrBI	CCGCTC	1 cut(s)	285
BsrFI	RCCGGY	1 cut(s)	310
BsrGI	TGTACA	1 cut(s)	1033
BsrI	ACTGG	1 cut(s)	839
BssAI	RCCGGY	1 cut(s)	310
BssECI	CCNNGG	1 cut(s)	1280
BssMI	GATC	4 cut(s)	46, 322, 473, 523
BssT1I	CCWWGG	1 cut(s)	1280
Bst2UI	CCWGG	1 cut(s)	662
Bst4CI	ACNGT	4 cut(s)	202, 394, 406, 1031
Bst6I	CTCTTC	2 cut(s)	151, 292
BstAPI	GCANNNNNTGC	1 cut(s)	1291
BstAUI	TGTACA	1 cut(s)	1033
BstC8I	GCNNGC	1 cut(s)	283
BstDEI	CTNAG	3 cut(s)	608, 717, 1203
BstF5I	GGATG	3 cut(s)	269, 340, 1352
BstFNI	CGCG	1 cut(s)	420
BstKTI	GATC	4 cut(s)	49, 325, 476, 526
BstMAI	GTCTC	6 cut(s)	148, 465, 498, 509, 528, 1302
BstMBI	GATC	4 cut(s)	46, 322, 473, 523
BstMWI	GCNNNNNNNGC	5 cut(s)	175, 181, 233, 236, 1291
BstNI	CCWGG	1 cut(s)	662
BstNSI	RCATGY	1 cut(s)	1120
BstSCI	CCNGG	1 cut(s)	660
BstSFI	CTRYAG	1 cut(s)	317
BstSLI	GKGCMC	1 cut(s)	399
BstUI	CGCG	1 cut(s)	420
BstV1I	GCAGC	6 cut(s)	6, 254, 422, 562, 739, 758
BstV2I	GAAGAC	1 cut(s)	663
BstX2I	RGATCY	2 cut(s)	46, 523
BstXI	CCANNNNNNTGG	1 cut(s)	765
BstYI	RGATCY	2 cut(s)	46, 523
BsuRI	GGCC	2 cut(s)	559, 1341
BtgZI	GCGATG	1 cut(s)	564
BtsCI	GGATG	3 cut(s)	269, 340, 1352
BtsI	GCAGTG	1 cut(s)	1096
BtsIMutI	CAGTG	3 cut(s)	1036, 1096, 1366
Cac8I	GCNNGC	1 cut(s)	283
CaiI	CAGNNNCTG	1 cut(s)	307
Cfr10I	RCCGGY	1 cut(s)	310
Cfr13I	GGNCC	2 cut(s)	1015, 1339
CseI	GACGC	1 cut(s)	259
Csp6I	GTAC	3 cut(s)	428, 1034, 1178
CviAII	CATG	8 cut(s)	54, 438, 497, 614, 775, 1117, 1191, 1246
CviQI	GTAC	3 cut(s)	428, 1034, 1178
DdeI	CTNAG	3 cut(s)	608, 717, 1203
DpnI	GATC	4 cut(s)	48, 324, 475, 525
DpnII	GATC	4 cut(s)	46, 322, 473, 523
Eam1104I	CTCTTC	2 cut(s)	151, 292
EarI	CTCTTC	2 cut(s)	151, 292
EciI	GGCGGA	4 cut(s)	89, 156, 223, 268
Eco130I	CCWWGG	1 cut(s)	1280
Eco24I	GRGCYC	1 cut(s)	261
Eco32I	GATATC	1 cut(s)	949
Eco47I	GGWCC	1 cut(s)	1015
Eco57I	CTGAAG	1 cut(s)	935
Eco88I	CYCGRG	2 cut(s)	248, 506
EcoRII	CCWGG	1 cut(s)	660
EcoRV	GATATC	1 cut(s)	949
EcoT14I	CCWWGG	1 cut(s)	1280
EcoT38I	GRGCYC	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	1280
Esp3I	CGTCTC	1 cut(s)	148
FaeI	CATG	8 cut(s)	57, 441, 500, 617, 778, 1120, 1194, 1249
FalI	AAGNNNNNCTT	2 cut(s)	800, 832
FaqI	GGGAC	2 cut(s)	188, 611
FatI	CATG	8 cut(s)	53, 437, 496, 613, 774, 1116, 1190, 1245
FauI	CCCGC	1 cut(s)	290
FauNDI	CATATG	1 cut(s)	921
FokI	GGATG	3 cut(s)	276, 347, 1339
FriOI	GRGCYC	1 cut(s)	261
FspBI	CTAG	5 cut(s)	296, 891, 1155, 1238, 1281
GsaI	CCCAGC	1 cut(s)	304
HaeIII	GGCC	2 cut(s)	559, 1341
HapII	CCGG	2 cut(s)	170, 311
HgaI	GACGC	1 cut(s)	259
Hin1II	CATG	8 cut(s)	57, 441, 500, 617, 778, 1120, 1194, 1249
HindIII	AAGCTT	1 cut(s)	479
HinfI	GANTC	2 cut(s)	599, 884
HpaII	CCGG	2 cut(s)	170, 311
HphI	GGTGA	1 cut(s)	790
Hpy166II	GTNNAC	2 cut(s)	1034, 1036
Hpy188I	TCNGA	7 cut(s)	263, 523, 718, 832, 915, 1123, 1143
Hpy188III	TCNNGA	7 cut(s)	250, 506, 508, 531, 891, 1149, 1301
Hpy8I	GTNNAC	2 cut(s)	1034, 1036
Hpy99I	CGWCG	2 cut(s)	108, 275
HpyAV	CCTTC	5 cut(s)	100, 254, 444, 570, 861
HpyCH4III	ACNGT	4 cut(s)	202, 394, 406, 1031
HpyCH4IV	ACGT	1 cut(s)	1180
HpyCH4V	TGCA	9 cut(s)	410, 457, 500, 774, 863, 908, 958, 1130, 1187
HpyF10VI	GCNNNNNNNGC	5 cut(s)	175, 181, 233, 236, 1291
HpyF3I	CTNAG	3 cut(s)	608, 717, 1203
HpySE526I	ACGT	1 cut(s)	1180
Hsp92II	CATG	8 cut(s)	57, 441, 500, 617, 778, 1120, 1194, 1249
Kzo9I	GATC	4 cut(s)	46, 322, 473, 523
LguI	GCTCTTC	1 cut(s)	292
LmnI	GCTCC	4 cut(s)	172, 760, 826, 1086
Lsp1109I	GCAGC	6 cut(s)	6, 254, 422, 562, 739, 758
LweI	GCATC	4 cut(s)	39, 254, 967, 1196
MaeI	CTAG	5 cut(s)	296, 891, 1155, 1238, 1281
MaeII	ACGT	1 cut(s)	1180
MaeIII	GTNAC	4 cut(s)	24, 683, 1198, 1248
MalI	GATC	4 cut(s)	48, 324, 475, 525
MbiI	CCGCTC	1 cut(s)	285
MboI	GATC	4 cut(s)	46, 322, 473, 523
MboII	GAAGA	9 cut(s)	138, 279, 555, 668, 735, 879, 1091, 1210, 1223
MflI	RGATCY	2 cut(s)	46, 523
MhlI	GDGCHC	2 cut(s)	261, 399
MluCI	AATT	7 cut(s)	62, 633, 642, 726, 800, 1134, 1319
MlyI	GAGTC	1 cut(s)	593
MmeI	TCCRAC	2 cut(s)	1039, 1042
MroXI	GAANNNNTTC	1 cut(s)	871
MseI	TTAA	2 cut(s)	81, 621
MslI	CAYNNNNRTG	1 cut(s)	763
MspI	CCGG	2 cut(s)	170, 311
MspR9I	CCNGG	1 cut(s)	662
MvaI	CCWGG	1 cut(s)	662
MvnI	CGCG	1 cut(s)	420
MwoI	GCNNNNNNNGC	5 cut(s)	175, 181, 233, 236, 1291
NdeI	CATATG	1 cut(s)	921
NdeII	GATC	4 cut(s)	46, 322, 473, 523
NlaIII	CATG	8 cut(s)	57, 441, 500, 617, 778, 1120, 1194, 1249
NlaIV	GGNNCC	4 cut(s)	48, 174, 822, 928
NmuCI	GTSAC	2 cut(s)	24, 683
NspI	RCATGY	1 cut(s)	1120
PaeR7I	CTCGAG	1 cut(s)	506
PciSI	GCTCTTC	1 cut(s)	292
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PdmI	GAANNNNTTC	1 cut(s)	871
PfeI	GAWTC	1 cut(s)	884
PleI	GAGTC	1 cut(s)	593
PpsI	GAGTC	1 cut(s)	593
Psp6I	CCWGG	1 cut(s)	660
PspFI	CCCAGC	1 cut(s)	300
PspGI	CCWGG	1 cut(s)	660
PspN4I	GGNNCC	4 cut(s)	48, 174, 822, 928
PspPI	GGNCC	2 cut(s)	1015, 1339
PstNI	CAGNNNCTG	1 cut(s)	307
PsuI	RGATCY	2 cut(s)	46, 523
RsaI	GTAC	3 cut(s)	429, 1035, 1179
RsaNI	GTAC	3 cut(s)	428, 1034, 1178
RseI	CAYNNNNRTG	1 cut(s)	763
SapI	GCTCTTC	1 cut(s)	292
SaqAI	TTAA	2 cut(s)	81, 621
Sau3AI	GATC	4 cut(s)	46, 322, 473, 523
Sau96I	GGNCC	2 cut(s)	1015, 1339
SchI	GAGTC	1 cut(s)	593
ScrFI	CCNGG	1 cut(s)	662
SduI	GDGCHC	2 cut(s)	261, 399
SfaNI	GCATC	4 cut(s)	39, 254, 967, 1196
SfcI	CTRYAG	1 cut(s)	317
Sfr274I	CTCGAG	1 cut(s)	506
SinI	GGWCC	1 cut(s)	1015
SlaI	CTCGAG	1 cut(s)	506
SmiMI	CAYNNNNRTG	1 cut(s)	763
SmlI	CTYRAG	5 cut(s)	462, 488, 506, 529, 538
SmoI	CTYRAG	5 cut(s)	462, 488, 506, 529, 538
SpeI	ACTAGT	1 cut(s)	1154
Sse9I	AATT	7 cut(s)	62, 633, 642, 726, 800, 1134, 1319
SspMI	CTAG	5 cut(s)	296, 891, 1155, 1238, 1281
StyD4I	CCNGG	1 cut(s)	660
StyI	CCWWGG	1 cut(s)	1280
TaaI	ACNGT	4 cut(s)	202, 394, 406, 1031
TaiI	ACGT	1 cut(s)	1183
TaqI	TCGA	3 cut(s)	507, 1302, 1317
TasI	AATT	7 cut(s)	62, 633, 642, 726, 800, 1134, 1319
TatI	WGTACW	1 cut(s)	1033
TauI	GCSGC	8 cut(s)	178, 181, 184, 230, 239, 356, 423, 575
TfiI	GAWTC	1 cut(s)	884
Tru1I	TTAA	2 cut(s)	81, 621
Tru9I	TTAA	2 cut(s)	81, 621
TscAI	CASTG	3 cut(s)	1036, 1096, 1366
TseFI	GTSAC	2 cut(s)	24, 683
TseI	GCWGC	6 cut(s)	19, 267, 410, 575, 752, 771
Tsp45I	GTSAC	2 cut(s)	24, 683
TspDTI	ATGAA	1 cut(s)	426
TspGWI	ACGGA	1 cut(s)	347
TspRI	CASTG	3 cut(s)	1036, 1096, 1366
VpaK11BI	GGWCC	1 cut(s)	1015
XapI	RAATTY	1 cut(s)	800
XbaI	TCTAGA	1 cut(s)	890
XceI	RCATGY	1 cut(s)	1120
XcmI	CCANNNNNNNNNTGG	1 cut(s)	831
XhoI	CTCGAG	1 cut(s)	506
XmaJI	CCTAGG	1 cut(s)	1280
XmnI	GAANNNNTTC	1 cut(s)	871
XspI	CTAG	5 cut(s)	296, 891, 1155, 1238, 1281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.