Prupe.2G060600_v2.0.a1

Bacterial extracellular solute-binding protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Forward (+)
7654551 .. 7658188
3638 bp
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UTR
Exon/CDS
Intron
Prupe.2G060600.2

Sequence Viewer

Length: 1686 bp
ATGGCTGCTGCTGCTGCTGCTTGTGTCGTTCCATTGGTGCCACCACACATCTCGTTCCCCTTTGACCTCTCATCTCCCCAAAATCCTAATAAGCTCACCCTTTTCTTCCCTCGCCTCCATCGCTCAACCAAATCCCAACCAACTCTCCGCTGTCATAGGCCTCTCTCTTTCTCTTGTAGCCTCAGCCTCACTCCACATTCTCCGGCGCCGGAGCAGCCCACCTCTGCCGTGCCTCAGACCTTGCTTCGGCTTGCTGCCTCTGCCGCCCTCTTCTTTGGGCTTGGGCTTTGCTGTTGGGCCGCTTCGGCCCAATGTCCGCCTCTTCCTCTCGGCGACCCTGGGGCGGTCCTGGAGGAGGAGCACACAGCTCAAGCCAGAGATGATGGTGATGAGGGTAAATCTGGCAATTTGGAAAGGTCAGAAGATAGCAAGTTGGAAGCAGCCTTTGGAGTCTGGAAGTCTAAGACATATGCTTTGACTGTACCTTTGAGAATTGCTGCTCTGCGTGGCTCTGTTCCACCTTCATGGGTTAAGGATTTCATGCAATCTCAAGGAAAAAGATCAAAGGTTCACTTGAAGTCCCATGCAAGTCTTGAGGGCATCTTTTCTGATCTGTCAATGGCCTTTAGCAAAGGCAAAGTTGGACCTTCATCTATTGTAGCAGCTGACCTCGTTAGTGTTGGGGATTCTTGGCTCAGTTATGCCATTAACAAGGCTTTAATTGAACCCATTCAAGGGGTAGAAGACCAGGACTGGTTTAAAGGATTGAGTGACAGATGGAAAGTATATCTCCGCAGGAACTCTGAGGGGAGAATTGATCCTGATGGTAAAGTATGGGCTGCTCCATATCGCTGGGGCTGCATGGTGATAGCATACAAAAAAACTAAATTCCGAAAGCATAAGTTGGCTCCTGTAGAGGACTGGGCAGATTTATGGCGACCTGAACTTGCAGGAAAGATTTCAATGGTTGATTCTCCTAGAGAGGTTATTGGTGCAGTTTTGAAGTACATGGGAGCATCATACAACACAAAAGACATCCATTTGCAAGTTGATGGTGGGAAAGATGCTGTCAGGCAAAATCTTGCTTTACTTGTAAAACAGGTCCGACTATTTGACAGTGTGCACTATTTAAAAGCATTTGGGGTTGGAGATGTGTGGATGGCTGTTGGGTGGAGCAGTGATGTTCTTCCTGTTGCCAAACGCATGTCTAATGTTGCAGTAATTGTTCCCAAATCAGGAGCTAGTATATGGGCTGATCTATGGGCAATTCCTGCTGTCTCTCAACTTGAAACAAATCGAATTGGGGGGAGAGTTAGAGGGCCATCTCCGCTCATCCATCAATGGATAGAGTTCTGCTTGCAAACTGCTCGAGCACTCCCTTTTAAGCAGGAGGTAGTCCCCGGAGCATCCCCATCTGCTCTTGATAGTGCTCCGCCAAAAGTTTTGAATGAGCTCATCAAGGGAAAGCCAAGACTGGACACAAACCTTGTTGCAGGAGTACCTCCACCTCAGATTTTGGCAAGGTGTGAATTTTTGGAGCCGTTATCTGATTCTACTCTGTCGGACTATCAATGGTTGATTGCTAGTATGCAGAAAAATAGGGATGGTTTAATCTCTAGTATGCATTCTTACATGTCATCATTGATTCAAATTTTTTGGCTGAAGTTGAATTCAAAGCCAGCATAA

Protein Analysis

562

Amino Acids

61.47

Weight (kDa)

9.21

Isoelectric Point (pI)

54.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011078)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 37, 205
AccBSI CCGCTC 1 cut(s) 1330
AciI CCGC 8 cut(s) 148, 264, 300, 317, 344, 793, 1328, 1433
AclWI GGATC 1 cut(s) 812
AcsI RAATTY 4 cut(s) 887, 1529, 1650, 1669
AcuI CTGAAG 1 cut(s) 1682
AcyI GRCGYC 1 cut(s) 206
AfaI GTAC 3 cut(s) 483, 1007, 1500
AfiI CCNNNNNNNGG 6 cut(s) 246, 343, 355, 734, 735, 1235
AflIII ACRYGT 1 cut(s) 1632
AjnI CCWGG 3 cut(s) 337, 348, 747
AjuI GAANNNNNNNTTGG 2 cut(s) 429, 461
AluBI AGCT 5 cut(s) 94, 368, 665, 1241, 1453
AluI AGCT 5 cut(s) 94, 368, 665, 1241, 1453
Alw21I GWGCWC 5 cut(s) 363, 1125, 1375, 1432, 1455
Alw26I GTCTC 1 cut(s) 1282
Alw44I GTGCAC 1 cut(s) 1121
AlwI GGATC 1 cut(s) 812
Ama87I CYCGRG 1 cut(s) 1368
AoxI GGCC 5 cut(s) 158, 297, 306, 621, 1319
ApaLI GTGCAC 1 cut(s) 1121
ApoI RAATTY 4 cut(s) 887, 1529, 1650, 1669
ArsI GACNNNNNNTTYG 4 cut(s) 457, 469, 489, 501
Asp700I GAANNNNTTC 2 cut(s) 729, 958
AspLEI GCGC 1 cut(s) 208
AspS9I GGNCC 6 cut(s) 297, 307, 346, 644, 1102, 1319
AsuC2I CCSGG 1 cut(s) 1401
AsuHPI GGTGA 3 cut(s) 88, 398, 877
AvaI CYCGRG 1 cut(s) 1368
AvaII GGWCC 3 cut(s) 346, 644, 1102
BaeGI GKGCMC 1 cut(s) 1125
BanI GGYRCC 2 cut(s) 37, 205
BanII GRGCYC 1 cut(s) 1455
BbsI GAAGAC 1 cut(s) 750
Bbv12I GWGCWC 5 cut(s) 363, 1125, 1375, 1432, 1455
BbvCI CCTCAGC 1 cut(s) 182
BbvI GCAGC 8 cut(s) 4, 226, 241, 452, 484, 674, 826, 845
BceAI ACGGC 2 cut(s) 212, 1525
BcgI CGANNNNNNTGC 2 cut(s) 1349, 1383
BciT130I CCWGG 3 cut(s) 339, 350, 749
BcnI CCSGG 1 cut(s) 1401
BcoDI GTCTC 1 cut(s) 1282
BfaI CTAG 4 cut(s) 978, 1242, 1584, 1617
BfmI CTRYAG 1 cut(s) 912
BfoI RGCGCY 1 cut(s) 209
BglI GCCNNNNNGGC 1 cut(s) 305
Bme1390I CCNGG 4 cut(s) 339, 350, 749, 1401
Bme18I GGWCC 3 cut(s) 346, 644, 1102
BmeT110I CYCGRG 1 cut(s) 1368
BmgT120I GGNCC 6 cut(s) 297, 307, 346, 644, 1102, 1319
BmiI GGNNCC 4 cut(s) 39, 207, 909, 1539
BmrFI CCNGG 4 cut(s) 339, 350, 749, 1401
BmrI ACTGGG 1 cut(s) 931
BmsI GCATC 4 cut(s) 609, 1025, 1054, 1415
BmuI ACTGGG 1 cut(s) 931
BpiI GAAGAC 1 cut(s) 750
BpmI CTGGAG 1 cut(s) 371
Bpu10I CCTNAGC 1 cut(s) 182
BpuEI CTTGAG 3 cut(s) 354, 534, 614
BpuMI CCSGG 1 cut(s) 1401
BsaHI GRCGYC 1 cut(s) 206
BsaJI CCNNGG 3 cut(s) 337, 338, 1399
BsaXI ACNNNNNCTCC 2 cut(s) 129, 159
Bsc4I CCNNNNNNNGG 6 cut(s) 246, 343, 355, 734, 735, 1235
Bse1I ACTGG 3 cut(s) 758, 926, 1479
BseBI CCWGG 3 cut(s) 339, 350, 749
BseDI CCNNGG 3 cut(s) 337, 338, 1399
BseGI GGATG 5 cut(s) 1035, 1164, 1332, 1406, 1609
BseLI CCNNNNNNNGG 6 cut(s) 246, 343, 355, 734, 735, 1235
BseMII CTCAG 5 cut(s) 196, 248, 709, 795, 1523
BseNI ACTGG 3 cut(s) 758, 926, 1479
BseRI GAGGAG 2 cut(s) 368, 371
BseSI GKGCMC 1 cut(s) 1125
BseXI GCAGC 8 cut(s) 4, 226, 241, 452, 484, 674, 826, 845
BseYI CCCAGC 1 cut(s) 852
BsgI GTGCAG 1 cut(s) 1014
BshFI GGCC 5 cut(s) 160, 299, 308, 623, 1321
BshNI GGYRCC 2 cut(s) 37, 205
BsiHKAI GWGCWC 5 cut(s) 363, 1125, 1375, 1432, 1455
BsiHKCI CYCGRG 1 cut(s) 1368
BsiSI CCGG 3 cut(s) 203, 209, 1401
BslFI GGGAC 2 cut(s) 565, 1382
BslI CCNNNNNNNGG 6 cut(s) 246, 343, 355, 734, 735, 1235
BsmAI GTCTC 1 cut(s) 1282
BsmFI GGGAC 2 cut(s) 565, 1382
BsmI GAATGC 1 cut(s) 1624
BsnI GGCC 5 cut(s) 160, 299, 308, 623, 1321
BsoBI CYCGRG 1 cut(s) 1368
Bsp1286I GDGCHC 5 cut(s) 363, 1125, 1375, 1432, 1455
Bsp143I GATC 4 cut(s) 560, 610, 817, 1255
BspACI CCGC 8 cut(s) 148, 264, 300, 317, 344, 793, 1328, 1433
BspANI GGCC 5 cut(s) 160, 299, 308, 623, 1321
BspCNI CTCAG 5 cut(s) 195, 247, 708, 796, 1522
BspLI GGNNCC 4 cut(s) 39, 207, 909, 1539
BspPI GGATC 1 cut(s) 812
BspT107I GGYRCC 2 cut(s) 37, 205
BsrBI CCGCTC 1 cut(s) 1330
BsrI ACTGG 3 cut(s) 758, 926, 1479
BssECI CCNNGG 3 cut(s) 337, 338, 1399
BssMI GATC 4 cut(s) 560, 610, 817, 1255
BssNI GRCGYC 1 cut(s) 206
Bst2UI CCWGG 3 cut(s) 339, 350, 749
Bst4CI ACNGT 2 cut(s) 481, 1118
Bst6I CTCTTC 2 cut(s) 275, 327
BstACI GRCGYC 1 cut(s) 206
BstAPI GCANNNNNTGC 1 cut(s) 1271
BstC8I GCNNGC 3 cut(s) 252, 1358, 1680
BstDEI CTNAG 6 cut(s) 182, 234, 462, 695, 804, 1509
BstENI CCTNNNNNAGG 1 cut(s) 353
BstF5I GGATG 5 cut(s) 1035, 1164, 1332, 1406, 1609
BstH2I RGCGCY 1 cut(s) 209
BstHHI GCGC 1 cut(s) 208
BstKTI GATC 4 cut(s) 563, 613, 820, 1258
BstMAI GTCTC 1 cut(s) 1282
BstMBI GATC 4 cut(s) 560, 610, 817, 1255
BstNI CCWGG 3 cut(s) 339, 350, 749
BstNSI RCATGY 2 cut(s) 1207, 1636
BstSCI CCNGG 4 cut(s) 337, 348, 747, 1399
BstSFI CTRYAG 1 cut(s) 912
BstSLI GKGCMC 1 cut(s) 1125
BstV1I GCAGC 8 cut(s) 4, 226, 241, 452, 484, 674, 826, 845
BstV2I GAAGAC 1 cut(s) 750
BstXI CCANNNNNNTGG 2 cut(s) 525, 852
BsuRI GGCC 5 cut(s) 160, 299, 308, 623, 1321
BtgZI GCGATG 1 cut(s) 104
BtsCI GGATG 5 cut(s) 1035, 1164, 1332, 1406, 1609
BtsI GCAGTG 1 cut(s) 1183
BtsIMutI CAGTG 2 cut(s) 1123, 1183
Cac8I GCNNGC 3 cut(s) 252, 1358, 1680
CfoI GCGC 1 cut(s) 208
Cfr13I GGNCC 6 cut(s) 297, 307, 346, 644, 1102, 1319
Csp6I GTAC 3 cut(s) 482, 1006, 1499
CviAII CATG 7 cut(s) 525, 541, 584, 862, 1009, 1204, 1633
CviQI GTAC 3 cut(s) 482, 1006, 1499
DdeI CTNAG 6 cut(s) 182, 234, 462, 695, 804, 1509
DinI GGCGCC 1 cut(s) 207
DpnI GATC 4 cut(s) 562, 612, 819, 1257
DpnII GATC 4 cut(s) 560, 610, 817, 1255
DraI TTTAAA 2 cut(s) 760, 1131
Eam1104I CTCTTC 2 cut(s) 275, 327
EarI CTCTTC 2 cut(s) 275, 327
EciI GGCGGA 2 cut(s) 306, 1422
Ecl136II GAGCTC 1 cut(s) 1453
Eco147I AGGCCT 1 cut(s) 160
Eco24I GRGCYC 1 cut(s) 1455
Eco47I GGWCC 3 cut(s) 346, 644, 1102
Eco53kI GAGCTC 1 cut(s) 1453
Eco57I CTGAAG 1 cut(s) 1682
Eco88I CYCGRG 1 cut(s) 1368
EcoICRI GAGCTC 1 cut(s) 1453
EcoNI CCTNNNNNAGG 1 cut(s) 353
EcoRI GAATTC 1 cut(s) 1669
EcoRII CCWGG 3 cut(s) 337, 348, 747
EcoT22I ATGCAT 1 cut(s) 1626
EcoT38I GRGCYC 1 cut(s) 1455
EgeI GGCGCC 1 cut(s) 207
EheI GGCGCC 1 cut(s) 207
FaeI CATG 7 cut(s) 528, 544, 587, 865, 1012, 1207, 1636
FalI AAGNNNNNCTT 2 cut(s) 557, 589
FaqI GGGAC 2 cut(s) 565, 1382
FatI CATG 7 cut(s) 524, 540, 583, 861, 1008, 1203, 1632
FauNDI CATATG 1 cut(s) 469
FokI GGATG 5 cut(s) 1022, 1171, 1319, 1393, 1616
FriOI GRGCYC 1 cut(s) 1455
FspBI CTAG 4 cut(s) 978, 1242, 1584, 1617
GlaI GCGC 1 cut(s) 207
GsaI CCCAGC 1 cut(s) 856
GsuI CTGGAG 1 cut(s) 371
HaeII RGCGCY 1 cut(s) 209
HaeIII GGCC 5 cut(s) 160, 299, 308, 623, 1321
HapII CCGG 3 cut(s) 203, 209, 1401
HhaI GCGC 1 cut(s) 208
Hin1I GRCGYC 1 cut(s) 206
Hin1II CATG 7 cut(s) 528, 544, 587, 865, 1012, 1207, 1636
Hin6I GCGC 1 cut(s) 206
HinP1I GCGC 1 cut(s) 206
HinfI GANTC 5 cut(s) 450, 686, 971, 1550, 1645
HpaII CCGG 3 cut(s) 203, 209, 1401
HphI GGTGA 3 cut(s) 88, 398, 877
Hpy166II GTNNAC 2 cut(s) 571, 1123
Hpy188I TCNGA 9 cut(s) 237, 421, 610, 805, 893, 1106, 1512, 1549, 1564
Hpy188III TCNNGA 5 cut(s) 454, 593, 821, 1236, 1421
Hpy8I GTNNAC 2 cut(s) 571, 1123
HpyAV CCTTC 2 cut(s) 531, 657
HpyCH4III ACNGT 2 cut(s) 481, 1118
HpyF3I CTNAG 6 cut(s) 182, 234, 462, 695, 804, 1509
Hsp92I GRCGYC 1 cut(s) 206
Hsp92II CATG 7 cut(s) 528, 544, 587, 865, 1012, 1207, 1636
HspAI GCGC 1 cut(s) 206
KasI GGCGCC 1 cut(s) 205
Kzo9I GATC 4 cut(s) 560, 610, 817, 1255
Lsp1109I GCAGC 8 cut(s) 4, 226, 241, 452, 484, 674, 826, 845
LweI GCATC 4 cut(s) 609, 1025, 1054, 1415
MaeI CTAG 4 cut(s) 978, 1242, 1584, 1617
MaeIII GTNAC 1 cut(s) 770
MalI GATC 4 cut(s) 562, 612, 819, 1257
MbiI CCGCTC 1 cut(s) 1330
MboI GATC 4 cut(s) 560, 610, 817, 1255
MboII GAAGA 6 cut(s) 97, 262, 314, 434, 755, 1178
MhlI GDGCHC 5 cut(s) 363, 1125, 1375, 1432, 1455
Mly113I GGCGCC 1 cut(s) 206
MlyI GAGTC 1 cut(s) 459
MmeI TCCRAC 5 cut(s) 414, 622, 1126, 1129, 1542
Mph1103I ATGCAT 1 cut(s) 1626
MroXI GAANNNNTTC 2 cut(s) 729, 958
MseI TTAA 7 cut(s) 531, 708, 719, 759, 1130, 1383, 1610
MslI CAYNNNNRTG 1 cut(s) 523
MspA1I CMGCKG 2 cut(s) 150, 665
MspI CCGG 3 cut(s) 203, 209, 1401
MspR9I CCNGG 4 cut(s) 339, 350, 749, 1401
Mva1269I GAATGC 1 cut(s) 1624
MvaI CCWGG 3 cut(s) 339, 350, 749
NarI GGCGCC 1 cut(s) 206
NciI CCSGG 1 cut(s) 1401
NdeI CATATG 1 cut(s) 469
NdeII GATC 4 cut(s) 560, 610, 817, 1255
NlaIII CATG 7 cut(s) 528, 544, 587, 865, 1012, 1207, 1636
NlaIV GGNNCC 4 cut(s) 39, 207, 909, 1539
NmeAIII GCCGAG 1 cut(s) 309
NmuCI GTSAC 1 cut(s) 770
NsiI ATGCAT 1 cut(s) 1626
NspI RCATGY 2 cut(s) 1207, 1636
PaeR7I CTCGAG 1 cut(s) 1368
PasI CCCWGGG 1 cut(s) 338
PceI AGGCCT 1 cut(s) 160
PciI ACATGT 1 cut(s) 1632
PctI GAATGC 1 cut(s) 1624
PdmI GAANNNNTTC 2 cut(s) 729, 958
PfeI GAWTC 4 cut(s) 686, 971, 1550, 1645
PfoI TCCNGGA 1 cut(s) 348
PleI GAGTC 1 cut(s) 458
PluTI GGCGCC 1 cut(s) 209
PpsI GAGTC 1 cut(s) 458
PscI ACATGT 1 cut(s) 1632
Psp124BI GAGCTC 1 cut(s) 1455
Psp6I CCWGG 3 cut(s) 337, 348, 747
PspFI CCCAGC 1 cut(s) 852
PspGI CCWGG 3 cut(s) 337, 348, 747
PspN4I GGNNCC 4 cut(s) 39, 207, 909, 1539
PspPI GGNCC 6 cut(s) 297, 307, 346, 644, 1102, 1319
PspXI VCTCGAGB 1 cut(s) 1368
PvuII CAGCTG 1 cut(s) 665
RsaI GTAC 3 cut(s) 483, 1007, 1500
RsaNI GTAC 3 cut(s) 482, 1006, 1499
RseI CAYNNNNRTG 1 cut(s) 523
SacI GAGCTC 1 cut(s) 1455
SaqAI TTAA 7 cut(s) 531, 708, 719, 759, 1130, 1383, 1610
Sau3AI GATC 4 cut(s) 560, 610, 817, 1255
Sau96I GGNCC 6 cut(s) 297, 307, 346, 644, 1102, 1319
SchI GAGTC 1 cut(s) 459
ScrFI CCNGG 4 cut(s) 339, 350, 749, 1401
SduI GDGCHC 5 cut(s) 363, 1125, 1375, 1432, 1455
SfaNI GCATC 4 cut(s) 609, 1025, 1054, 1415
SfcI CTRYAG 1 cut(s) 912
SfiI GGCCNNNNNGGCC 1 cut(s) 305
SfoI GGCGCC 1 cut(s) 207
Sfr274I CTCGAG 1 cut(s) 1368
SinI GGWCC 3 cut(s) 346, 644, 1102
SlaI CTCGAG 1 cut(s) 1368
SmiMI CAYNNNNRTG 1 cut(s) 523
SmlI CTYRAG 4 cut(s) 369, 549, 593, 1368
SmoI CTYRAG 4 cut(s) 369, 549, 593, 1368
SseBI AGGCCT 1 cut(s) 160
SsiI CCGC 8 cut(s) 148, 264, 300, 317, 344, 793, 1328, 1433
SspDI GGCGCC 1 cut(s) 205
SspMI CTAG 4 cut(s) 978, 1242, 1584, 1617
SstI GAGCTC 1 cut(s) 1455
StuI AGGCCT 1 cut(s) 160
StyD4I CCNGG 4 cut(s) 337, 348, 747, 1399
TaaI ACNGT 2 cut(s) 481, 1118
TaqI TCGA 2 cut(s) 1297, 1369
TatI WGTACW 1 cut(s) 1005
TauI GCSGC 2 cut(s) 266, 302
TfiI GAWTC 4 cut(s) 686, 971, 1550, 1645
Tru1I TTAA 7 cut(s) 531, 708, 719, 759, 1130, 1383, 1610
Tru9I TTAA 7 cut(s) 531, 708, 719, 759, 1130, 1383, 1610
TscAI CASTG 2 cut(s) 1123, 1183
TseFI GTSAC 1 cut(s) 770
Tsp45I GTSAC 1 cut(s) 770
TspDTI ATGAA 3 cut(s) 513, 529, 639
TspRI CASTG 2 cut(s) 1123, 1183
VneI GTGCAC 1 cut(s) 1121
VpaK11BI GGWCC 3 cut(s) 346, 644, 1102
XagI CCTNNNNNAGG 1 cut(s) 353
XapI RAATTY 4 cut(s) 887, 1529, 1650, 1669
XceI RCATGY 2 cut(s) 1207, 1636
XhoI CTCGAG 1 cut(s) 1368
XmnI GAANNNNTTC 2 cut(s) 729, 958
XspI CTAG 4 cut(s) 978, 1242, 1584, 1617
Zsp2I ATGCAT 1 cut(s) 1626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.