Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0011078

Physical Location & Seq

Genomic Coordinates Reverse (-)

46922995 .. 46927468

Gene Structure 4474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00319290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGGCTACTGCTCCATTGCTGCCGTCACGCATCTGTTTCCCTTTGGATCCCTCATGTTCCCAATTCCAAAGCCCAAACCTTAATCCCTCCTTCCCTCTCCGCCGTCGCTCTAACCATACTCATAGCCTCACTCTCACACTCGTCTCTTCTGCCCACACTCTCACTCCGCCGGAGCCGCCGCCTCCTACTTCCACCACCGTCCCTCACACCTTGCTTCGGTTCGCCTCCTCTGCCGCCCTCCTTCTCGGGATTGGGCTCGGATGCTGCGTCGCCTCCGCCCGCTCTTCTCCTCTTCCTCCTCCTCTCGCCCAGCCTCTGCCGGCGCTACAGGATCAAGCTACGGATGATGACAATTTAGAAGCCGCATTTGGAACTTGGAAGTCCAAGACATTCGCTTTGACTGTGCCCTTGACAGTTGCTGCTCTACGTGGCTCTGTACCTCCTTCATGGATTAAGGATTTTATGCAGTCTCAAGGAAAAAGATCAAAGCTTCAACTCAAGTCTCATGCAAGTCTCGAGAGCGTATTTTCGGATCTCTCAAGAGACTTCAGCAAAGGCGATGTTCGGCCTTCTTCTGTTGCGGCTGCTGATGTAGTTAGTATTGGGGACTCTTGGCTCAGTCATGCCATTAACAAGGGTCTAATTGAGCCAATTCAAGGGGTAGAAGACCAGGATTGGTATAAAGGATTGAGTGACAGATGGAAAGTATATCTACGCAGGAACTCTGAGGGGAGAATTGACCCTGATGGTAAAATATGGGCTGCTCCATATCGGTGGGGCTGCGTGGTGATAGCATACAAAAAAACTAAATTTAGAAAGCATAACTTGGCCCCTATATCGGACTGGGCAGATTTATGGCGACCTGAACTTGCAGGAAGAATTTCAATGGTTGATTCTTCTAGAGAGGTTATCGGTGCAGTTCTGAAGCATATGGGAACCTCCTACAACACAGAAGATATCCATTTGCAAGTTGATGGTGGGAAAGATGCTGTAAGGCAAAATCTGGCTTTACTTGGAAAACAGGTCCGACTATTTGACAGTGTACACTATTTGAAAGCATTTGCGGTTGGAGATGTGTGGGTGGCTGTCGGGTGGAGCAGTGATGTTCTTCCTGTTGCCAAACGCATGTCTGACGTTGCAGTAATTGTTCCGAAATCTGGAACTAGTATATGGGCAGATATGTGGGCAACCCCTGCTGTCTCTCGACTTGAAACAAATCGAATTGGGGGCGAGTTAGAGGGCCATCTCCACTCATCCATCAGTGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0015695 GO:0015696 GO:0015846 GO:0015847 GO:0019808 GO:0019810 GO:0030288 GO:0030313 GO:0031975 GO:0042597 GO:0043167 GO:0043169 GO:0044464 GO:0051179 GO:0051234 GO:0070405 GO:0071702 GO:0071705

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP_bac_6

Protein Analysis

422

Amino Acids

45.99

Weight (kDa)

9.01

Isoelectric Point (pI)

53.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBP_bac_8	PF13416	194 - 401	1e-16	Bacterial extracellular solute-binding protein
SBP_bac_11	PF13531	195 - 371	5.1e-06	Bacterial extracellular solute-binding protein
SBP_bac_6	PF13343	196 - 400	3.2e-22	Bacterial extracellular solute-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31410
fragaria_vesca	FvH4_3g41920 FvH4_3g41920 FvH4_3g41920
malus_domestica	MD07G1026800.v1.1
prunus_persica	Prupe.2G060600_v2.0.a1 Prupe.2G060600_v2.0.a1
pyrus_communis	pycom07g02020 pycom07g02060
rosa_chinensis	RchiOBHm_Chr1g0331171
rosa_laevigata	RLG00000029748
rosa_multiflora	Rmu_sc0005711.1_g000003
rosa_roxburghii	Rroxscaffold_4G00319290
rosa_rugosa	Rorug01G0091900 Rorug01G0092000
rosa_samantha	Rh1AG116000 Rh1BG087700 Rh1CG111500 Rh1DG120400
rosa_wichuraiana	Rw1G009320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	282
AclWI	GGATC	4 cut(s)	41, 54, 339, 540
AcsI	RAATTY	2 cut(s)	809, 879
AcuI	CTGAAG	2 cut(s)	532, 944
AfaI	GTAC	2 cut(s)	438, 1044
AfiI	CCNNNNNNNGG	4 cut(s)	216, 656, 838, 1157
AgsI	TTSAA	5 cut(s)	494, 656, 885, 1054, 1211
AhlI	ACTAGT	1 cut(s)	1163
AjnI	CCWGG	1 cut(s)	669
AjuI	GAANNNNNNNTTGG	2 cut(s)	351, 383
AluBI	AGCT	2 cut(s)	338, 490
AluI	AGCT	2 cut(s)	338, 490
Alw26I	GTCTC	6 cut(s)	148, 474, 507, 518, 537, 1204
AlwI	GGATC	4 cut(s)	41, 54, 339, 540
AlwNI	CAGNNNCTG	2 cut(s)	316, 419
Ama87I	CYCGRG	2 cut(s)	245, 515
AoxI	GGCC	3 cut(s)	566, 828, 1240
ApeKI	GCWGC	6 cut(s)	19, 264, 419, 584, 761, 780
ApoI	RAATTY	2 cut(s)	809, 879
ArsI	GACNNNNNNTTYG	2 cut(s)	379, 411
Asp700I	GAANNNNTTC	1 cut(s)	880
AspLEI	GCGC	1 cut(s)	325
AspS9I	GGNCC	3 cut(s)	829, 1024, 1240
AsuHPI	GGTGA	1 cut(s)	799
AvaI	CYCGRG	2 cut(s)	245, 515
AvaII	GGWCC	1 cut(s)	1024
BaeGI	GKGCMC	1 cut(s)	408
BamHI	GGATCC	1 cut(s)	46
BanII	GRGCYC	1 cut(s)	258
BbsI	GAAGAC	1 cut(s)	672
BbvI	GCAGC	6 cut(s)	6, 251, 406, 571, 748, 767
BccI	CCATC	5 cut(s)	693, 740, 968, 1251, 1265
BceAI	ACGGC	2 cut(s)	7, 87
BciT130I	CCWGG	1 cut(s)	671
BcoDI	GTCTC	6 cut(s)	148, 474, 507, 518, 537, 1204
BcuI	ACTAGT	1 cut(s)	1163
BfaI	CTAG	2 cut(s)	900, 1164
BfmI	CTRYAG	1 cut(s)	326
BfoI	RGCGCY	1 cut(s)	326
Bme1390I	CCNGG	1 cut(s)	671
Bme18I	GGWCC	1 cut(s)	1024
BmeT110I	CYCGRG	2 cut(s)	245, 515
BmgT120I	GGNCC	3 cut(s)	829, 1024, 1240
BmiI	GGNNCC	4 cut(s)	48, 174, 831, 937
BmrFI	CCNGG	1 cut(s)	671
BmrI	ACTGGG	1 cut(s)	853
BmsI	GCATC	3 cut(s)	39, 251, 976
BmuI	ACTGGG	1 cut(s)	853
BpiI	GAAGAC	1 cut(s)	672
BpuEI	CTTGAG	3 cut(s)	456, 482, 523
BsaAI	YACGTR	1 cut(s)	428
BsaXI	ACNNNNNCTCC	2 cut(s)	148, 178
Bsc4I	CCNNNNNNNGG	4 cut(s)	216, 656, 838, 1157
Bse118I	RCCGGY	1 cut(s)	319
Bse1I	ACTGG	1 cut(s)	848
Bse3DI	GCAATG	1 cut(s)	14
BseBI	CCWGG	1 cut(s)	671
BseGI	GGATG	3 cut(s)	266, 349, 1253
BseLI	CCNNNNNNNGG	4 cut(s)	216, 656, 838, 1157
BseMI	GCAATG	1 cut(s)	14
BseMII	CTCAG	2 cut(s)	631, 717
BseNI	ACTGG	1 cut(s)	848
BseRI	GAGGAG	4 cut(s)	217, 279, 288, 291
BseSI	GKGCMC	1 cut(s)	408
BseXI	GCAGC	6 cut(s)	6, 251, 406, 571, 748, 767
BseYI	CCCAGC	1 cut(s)	309
BsgI	GTGCAG	1 cut(s)	936
BshFI	GGCC	3 cut(s)	568, 830, 1242
BsiHKCI	CYCGRG	2 cut(s)	245, 515
BsiSI	CCGG	2 cut(s)	170, 320
BslFI	GGGAC	2 cut(s)	185, 620
BslI	CCNNNNNNNGG	4 cut(s)	216, 656, 838, 1157
BsmAI	GTCTC	6 cut(s)	148, 474, 507, 518, 537, 1204
BsmBI	CGTCTC	1 cut(s)	148
BsmFI	GGGAC	2 cut(s)	185, 620
BsnI	GGCC	3 cut(s)	568, 830, 1242
BsoBI	CYCGRG	2 cut(s)	245, 515
Bsp1286I	GDGCHC	2 cut(s)	258, 408
Bsp1407I	TGTACA	1 cut(s)	1042
Bsp143I	GATC	4 cut(s)	46, 331, 482, 532
BspANI	GGCC	3 cut(s)	568, 830, 1242
BspCNI	CTCAG	2 cut(s)	630, 718
BspLI	GGNNCC	4 cut(s)	48, 174, 831, 937
BspPI	GGATC	4 cut(s)	41, 54, 339, 540
BspQI	GCTCTTC	1 cut(s)	289
BsrBI	CCGCTC	1 cut(s)	282
BsrDI	GCAATG	1 cut(s)	14
BsrFI	RCCGGY	1 cut(s)	319
BsrGI	TGTACA	1 cut(s)	1042
BsrI	ACTGG	1 cut(s)	848
BssAI	RCCGGY	1 cut(s)	319
BssMI	GATC	4 cut(s)	46, 331, 482, 532
Bst2UI	CCWGG	1 cut(s)	671
Bst4CI	ACNGT	4 cut(s)	199, 403, 415, 1040
Bst6I	CTCTTC	3 cut(s)	151, 289, 297
BstAPI	GCANNNNNTGC	1 cut(s)	1193
BstAUI	TGTACA	1 cut(s)	1042
BstBAI	YACGTR	1 cut(s)	428
BstC8I	GCNNGC	2 cut(s)	280, 321
BstDEI	CTNAG	2 cut(s)	617, 726
BstF5I	GGATG	3 cut(s)	266, 349, 1253
BstH2I	RGCGCY	1 cut(s)	326
BstHHI	GCGC	1 cut(s)	325
BstKTI	GATC	4 cut(s)	49, 334, 485, 535
BstMAI	GTCTC	6 cut(s)	148, 474, 507, 518, 537, 1204
BstMBI	GATC	4 cut(s)	46, 331, 482, 532
BstMWI	GCNNNNNNNGC	3 cut(s)	175, 230, 1193
BstNI	CCWGG	1 cut(s)	671
BstNSI	RCATGY	1 cut(s)	1129
BstSCI	CCNGG	1 cut(s)	669
BstSFI	CTRYAG	1 cut(s)	326
BstSLI	GKGCMC	1 cut(s)	408
BstV1I	GCAGC	6 cut(s)	6, 251, 406, 571, 748, 767
BstV2I	GAAGAC	1 cut(s)	672
BstX2I	RGATCY	2 cut(s)	46, 532
BstXI	CCANNNNNNTGG	1 cut(s)	774
BstYI	RGATCY	2 cut(s)	46, 532
BsuRI	GGCC	3 cut(s)	568, 830, 1242
BtgZI	GCGATG	1 cut(s)	573
BtsCI	GGATG	3 cut(s)	266, 349, 1253
BtsI	GCAGTG	1 cut(s)	1105
BtsIMutI	CAGTG	3 cut(s)	1045, 1105, 1267
Cac8I	GCNNGC	2 cut(s)	280, 321
CaiI	CAGNNNCTG	2 cut(s)	316, 419
CfoI	GCGC	1 cut(s)	325
Cfr10I	RCCGGY	1 cut(s)	319
Cfr13I	GGNCC	3 cut(s)	829, 1024, 1240
CseI	GACGC	1 cut(s)	256
Csp6I	GTAC	2 cut(s)	437, 1043
CviAII	CATG	5 cut(s)	54, 447, 506, 623, 1126
CviQI	GTAC	2 cut(s)	437, 1043
DdeI	CTNAG	2 cut(s)	617, 726
DpnI	GATC	4 cut(s)	48, 333, 484, 534
DpnII	GATC	4 cut(s)	46, 331, 482, 532
Eam1104I	CTCTTC	3 cut(s)	151, 289, 297
EarI	CTCTTC	3 cut(s)	151, 289, 297
EciI	GGCGGA	3 cut(s)	89, 156, 265
Eco24I	GRGCYC	1 cut(s)	258
Eco32I	GATATC	1 cut(s)	958
Eco47I	GGWCC	1 cut(s)	1024
Eco57I	CTGAAG	2 cut(s)	532, 944
Eco88I	CYCGRG	2 cut(s)	245, 515
EcoRII	CCWGG	1 cut(s)	669
EcoRV	GATATC	1 cut(s)	958
EcoT38I	GRGCYC	1 cut(s)	258
Esp3I	CGTCTC	1 cut(s)	148
FaeI	CATG	5 cut(s)	57, 450, 509, 626, 1129
FalI	AAGNNNNNCTT	2 cut(s)	809, 841
FaqI	GGGAC	2 cut(s)	185, 620
FatI	CATG	5 cut(s)	53, 446, 505, 622, 1125
FauI	CCCGC	1 cut(s)	287
FauNDI	CATATG	1 cut(s)	930
FokI	GGATG	3 cut(s)	273, 356, 1240
FriOI	GRGCYC	1 cut(s)	258
FspBI	CTAG	2 cut(s)	900, 1164
GlaI	GCGC	1 cut(s)	324
GsaI	CCCAGC	1 cut(s)	313
HaeII	RGCGCY	1 cut(s)	326
HaeIII	GGCC	3 cut(s)	568, 830, 1242
HapII	CCGG	2 cut(s)	170, 320
HgaI	GACGC	1 cut(s)	256
HhaI	GCGC	1 cut(s)	325
Hin1II	CATG	5 cut(s)	57, 450, 509, 626, 1129
Hin6I	GCGC	1 cut(s)	323
HinP1I	GCGC	1 cut(s)	323
HindIII	AAGCTT	1 cut(s)	488
HinfI	GANTC	2 cut(s)	608, 893
HpaII	CCGG	2 cut(s)	170, 320
HphI	GGTGA	1 cut(s)	799
Hpy166II	GTNNAC	2 cut(s)	1043, 1045
Hpy188I	TCNGA	8 cut(s)	260, 532, 727, 841, 924, 1028, 1132, 1152
Hpy188III	TCNNGA	7 cut(s)	247, 515, 517, 540, 900, 1158, 1203
Hpy8I	GTNNAC	2 cut(s)	1043, 1045
Hpy99I	CGWCG	2 cut(s)	108, 272
HpyAV	CCTTC	4 cut(s)	100, 251, 453, 579
HpyCH4III	ACNGT	4 cut(s)	199, 403, 415, 1040
HpyCH4IV	ACGT	2 cut(s)	427, 1134
HpyCH4V	TGCA	6 cut(s)	466, 509, 872, 917, 967, 1139
HpyF10VI	GCNNNNNNNGC	3 cut(s)	175, 230, 1193
HpyF3I	CTNAG	2 cut(s)	617, 726
HpySE526I	ACGT	2 cut(s)	427, 1134
Hsp92II	CATG	5 cut(s)	57, 450, 509, 626, 1129
HspAI	GCGC	1 cut(s)	323
KroI	GCCGGC	1 cut(s)	319
KroNI	GCCGGC	1 cut(s)	321
Kzo9I	GATC	4 cut(s)	46, 331, 482, 532
LguI	GCTCTTC	1 cut(s)	289
LmnI	GCTCC	4 cut(s)	16, 172, 769, 1095
Lsp1109I	GCAGC	6 cut(s)	6, 251, 406, 571, 748, 767
LweI	GCATC	3 cut(s)	39, 251, 976
MaeI	CTAG	2 cut(s)	900, 1164
MaeII	ACGT	2 cut(s)	427, 1134
MaeIII	GTNAC	2 cut(s)	24, 692
MalI	GATC	4 cut(s)	48, 333, 484, 534
MbiI	CCGCTC	1 cut(s)	282
MboI	GATC	4 cut(s)	46, 331, 482, 532
MboII	GAAGA	9 cut(s)	138, 276, 284, 564, 677, 888, 888, 965, 1100
MflI	RGATCY	2 cut(s)	46, 532
MhlI	GDGCHC	2 cut(s)	258, 408
MluCI	AATT	9 cut(s)	62, 352, 642, 651, 735, 809, 879, 1143, 1221
MlyI	GAGTC	1 cut(s)	602
MmeI	TCCRAC	2 cut(s)	1048, 1051
MroNI	GCCGGC	1 cut(s)	319
MroXI	GAANNNNTTC	1 cut(s)	880
MseI	TTAA	3 cut(s)	81, 453, 630
MslI	CAYNNNNRTG	1 cut(s)	772
MspI	CCGG	2 cut(s)	170, 320
MspR9I	CCNGG	1 cut(s)	671
MvaI	CCWGG	1 cut(s)	671
MwoI	GCNNNNNNNGC	3 cut(s)	175, 230, 1193
NaeI	GCCGGC	1 cut(s)	321
NdeI	CATATG	1 cut(s)	930
NdeII	GATC	4 cut(s)	46, 331, 482, 532
NgoMIV	GCCGGC	1 cut(s)	319
NlaIII	CATG	5 cut(s)	57, 450, 509, 626, 1129
NlaIV	GGNNCC	4 cut(s)	48, 174, 831, 937
NmuCI	GTSAC	2 cut(s)	24, 692
NspI	RCATGY	1 cut(s)	1129
PaeR7I	CTCGAG	1 cut(s)	515
PciSI	GCTCTTC	1 cut(s)	289
PcsI	WCGNNNNNNNCGW	1 cut(s)	264
PdiI	GCCGGC	1 cut(s)	321
PdmI	GAANNNNTTC	1 cut(s)	880
PfeI	GAWTC	1 cut(s)	893
PleI	GAGTC	1 cut(s)	602
PpsI	GAGTC	1 cut(s)	602
Ppu21I	YACGTR	1 cut(s)	428
Psp6I	CCWGG	1 cut(s)	669
PspFI	CCCAGC	1 cut(s)	309
PspGI	CCWGG	1 cut(s)	669
PspN4I	GGNNCC	4 cut(s)	48, 174, 831, 937
PspPI	GGNCC	3 cut(s)	829, 1024, 1240
PstNI	CAGNNNCTG	2 cut(s)	316, 419
PsuI	RGATCY	2 cut(s)	46, 532
RsaI	GTAC	2 cut(s)	438, 1044
RsaNI	GTAC	2 cut(s)	437, 1043
RseI	CAYNNNNRTG	1 cut(s)	772
SapI	GCTCTTC	1 cut(s)	289
SaqAI	TTAA	3 cut(s)	81, 453, 630
Sau3AI	GATC	4 cut(s)	46, 331, 482, 532
Sau96I	GGNCC	3 cut(s)	829, 1024, 1240
SchI	GAGTC	1 cut(s)	602
ScrFI	CCNGG	1 cut(s)	671
SduI	GDGCHC	2 cut(s)	258, 408
SfaNI	GCATC	3 cut(s)	39, 251, 976
SfcI	CTRYAG	1 cut(s)	326
Sfr274I	CTCGAG	1 cut(s)	515
SinI	GGWCC	1 cut(s)	1024
SlaI	CTCGAG	1 cut(s)	515
SmiMI	CAYNNNNRTG	1 cut(s)	772
SmlI	CTYRAG	4 cut(s)	471, 497, 515, 538
SmoI	CTYRAG	4 cut(s)	471, 497, 515, 538
SpeI	ACTAGT	1 cut(s)	1163
Sse9I	AATT	9 cut(s)	62, 352, 642, 651, 735, 809, 879, 1143, 1221
SspMI	CTAG	2 cut(s)	900, 1164
StyD4I	CCNGG	1 cut(s)	669
TaaI	ACNGT	4 cut(s)	199, 403, 415, 1040
TaiI	ACGT	2 cut(s)	430, 1137
TaqI	TCGA	3 cut(s)	516, 1204, 1219
TasI	AATT	9 cut(s)	62, 352, 642, 651, 735, 809, 879, 1143, 1221
TatI	WGTACW	1 cut(s)	1042
TauI	GCSGC	5 cut(s)	178, 181, 236, 365, 584
TfiI	GAWTC	1 cut(s)	893
Tru1I	TTAA	3 cut(s)	81, 453, 630
Tru9I	TTAA	3 cut(s)	81, 453, 630
TscAI	CASTG	3 cut(s)	1045, 1105, 1267
TseFI	GTSAC	2 cut(s)	24, 692
TseI	GCWGC	6 cut(s)	19, 264, 419, 584, 761, 780
Tsp45I	GTSAC	2 cut(s)	24, 692
TspDTI	ATGAA	1 cut(s)	435
TspGWI	ACGGA	1 cut(s)	356
TspRI	CASTG	3 cut(s)	1045, 1105, 1267
VpaK11BI	GGWCC	1 cut(s)	1024
XapI	RAATTY	2 cut(s)	809, 879
XbaI	TCTAGA	1 cut(s)	899
XceI	RCATGY	1 cut(s)	1129
XhoI	CTCGAG	1 cut(s)	515
XmnI	GAANNNNTTC	1 cut(s)	880
XspI	CTAG	2 cut(s)	900, 1164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.