FvH4_3g43300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0009340
Physical Location & Seq
Reverse (-)
36145221 .. 36147656
2436 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g43300.t2

Sequence Viewer

Length: 801 bp
ATGTTGATGGTATATGCTCCAAGAGCTATCACATATCTAGATTCTCATATACTAAATGAGACCATATTACCATGTAAGATTACACATGTGAATTCCTTGAACAATGTTTCAATCTGTCTTGGCCGAATCCGAGCTCCTTGTAGTTCTGTATTGTCTGCTTCTTCATTTTATTGGAAGAGTCGAAATCAGCAGAGCAGCACCAAGAAATGGCTTTGCCAGATGCATGATTCAATTCCATCAGACGAGGAGTATCGATCATCGCGGAACATAGCAATCAGTTTGTTTAGGAGGTACAGGAATGTGCTTGACCGGGGAGGAGGTGACAACTTGAAAGAGTTCATCAGTGCTGGGGTGAATGCGTATGCGCTGGGATGCACGGATGAAGGATTAAGAAAAGAGCTTATTGATATGATGCAAACTGGTGTTGAAATTGAAGCAATGGAGAGCTATGGTGGAAGCACTAGTTTGAAATCCAAGATTGCATCAGGGGAGATTGATGAGTGCATTCTGTGGTTGAGCATCATATTTATCACCATTTTGTGTACGCCGCAGCCAACGATAGTTAGATGGTCATCCACACCTCCAGTGTCAGATGAAGAAAGGCTCAAGTGGAAAGGCTTTTGTGCTGTCATAGCAAATGCTTATTACTTGAGGGGAATGGCATGGCTTCCTGTTAAGACTCTTCAACTAGAGCAAATGGCAGTAGTTGGACATGCTGAGGAACCATCTGTTGTTGCAAGTCGAATGCGATTAGTGTTTAGCACACTCGAGGTTGTGAGTCCACAGTGGCCTAGAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

267

Amino Acids

29.88

Weight (kDa)

8.09

Isoelectric Point (pI)

60.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7876 PF25286 75 - 222 2.5e-75 Domain of unknown function (DUF7876)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 207
AccII CGCG 1 cut(s) 262
AciI CCGC 2 cut(s) 262, 548
AcoI YGGCCR 1 cut(s) 121
AcsI RAATTY 1 cut(s) 91
AfaI GTAC 2 cut(s) 293, 544
AfiI CCNNNNNNNGG 1 cut(s) 207
AflIII ACRYGT 1 cut(s) 85
AgsI TTSAA 8 cut(s) 100, 111, 231, 331, 428, 434, 469, 686
AhlI ACTAGT 1 cut(s) 461
AluBI AGCT 4 cut(s) 26, 134, 400, 447
AluI AGCT 4 cut(s) 26, 134, 400, 447
Alw21I GWGCWC 1 cut(s) 136
Alw26I GTCTC 1 cut(s) 53
Ama87I CYCGRG 1 cut(s) 767
AoxI GGCC 2 cut(s) 121, 788
ApeKI GCWGC 2 cut(s) 195, 550
ApoI RAATTY 1 cut(s) 91
Asp700I GAANNNNTTC 1 cut(s) 335
AspLEI GCGC 1 cut(s) 367
AsuC2I CCSGG 1 cut(s) 311
AsuHPI GGTGA 3 cut(s) 332, 364, 523
AvaI CYCGRG 1 cut(s) 767
BanII GRGCYC 1 cut(s) 136
Bbv12I GWGCWC 1 cut(s) 136
BbvCI CCTCAGC 1 cut(s) 717
BbvI GCAGC 2 cut(s) 207, 562
BccI CCATC 3 cut(s) 244, 561, 733
BcnI CCSGG 1 cut(s) 311
BcoDI GTCTC 1 cut(s) 53
BcuI ACTAGT 1 cut(s) 461
BfaI CTAG 4 cut(s) 38, 462, 689, 792
BisI GCNGC 3 cut(s) 196, 548, 551
BlsI GCNGC 3 cut(s) 197, 549, 552
Bme1390I CCNGG 1 cut(s) 311
BmeT110I CYCGRG 1 cut(s) 767
BmiI GGNNCC 1 cut(s) 723
BmrFI CCNGG 1 cut(s) 311
BmsI GCATC 5 cut(s) 210, 362, 402, 491, 528
BpmI CTGGAG 1 cut(s) 567
Bpu10I CCTNAGC 1 cut(s) 717
BpuEI CTTGAG 2 cut(s) 590, 670
BpuMI CCSGG 1 cut(s) 311
Bsa29I ATCGAT 1 cut(s) 253
BsaBI GATNNNNATC 1 cut(s) 571
BsaI GGTCTC 1 cut(s) 53
BsaJI CCNNGG 1 cut(s) 310
Bsc4I CCNNNNNNNGG 1 cut(s) 207
Bse1I ACTGG 2 cut(s) 424, 584
Bse3DI GCAATG 1 cut(s) 444
Bse8I GATNNNNATC 1 cut(s) 571
BseCI ATCGAT 1 cut(s) 253
BseDI CCNNGG 1 cut(s) 310
BseGI GGATG 3 cut(s) 377, 385, 572
BseJI GATNNNNATC 1 cut(s) 571
BseLI CCNNNNNNNGG 1 cut(s) 207
BseMI GCAATG 1 cut(s) 444
BseMII CTCAG 1 cut(s) 708
BseNI ACTGG 2 cut(s) 424, 584
BseRI GAGGAG 2 cut(s) 260, 330
BseXI GCAGC 2 cut(s) 207, 562
BseYI CCCAGC 2 cut(s) 347, 367
Bsh1236I CGCG 1 cut(s) 262
BshFI GGCC 2 cut(s) 123, 790
BshVI ATCGAT 1 cut(s) 253
BsiHKAI GWGCWC 1 cut(s) 136
BsiHKCI CYCGRG 1 cut(s) 767
BsiSI CCGG 1 cut(s) 310
BslI CCNNNNNNNGG 1 cut(s) 207
BsmAI GTCTC 1 cut(s) 53
BsmI GAATGC 3 cut(s) 361, 504, 750
BsnI GGCC 2 cut(s) 123, 790
Bso31I GGTCTC 1 cut(s) 53
BsoBI CYCGRG 1 cut(s) 767
Bsp1286I GDGCHC 1 cut(s) 136
Bsp143I GATC 1 cut(s) 254
BspACI CCGC 2 cut(s) 262, 548
BspANI GGCC 2 cut(s) 123, 790
BspCNI CTCAG 1 cut(s) 709
BspDI ATCGAT 1 cut(s) 253
BspFNI CGCG 1 cut(s) 262
BspLI GGNNCC 1 cut(s) 723
BspTNI GGTCTC 1 cut(s) 53
BsrDI GCAATG 1 cut(s) 444
BsrI ACTGG 2 cut(s) 424, 584
BssECI CCNNGG 1 cut(s) 310
BssMI GATC 1 cut(s) 254
Bst4CI ACNGT 1 cut(s) 786
Bst6I CTCTTC 2 cut(s) 170, 687
BstDEI CTNAG 1 cut(s) 717
BstF5I GGATG 3 cut(s) 377, 385, 572
BstFNI CGCG 1 cut(s) 262
BstHHI GCGC 1 cut(s) 367
BstKTI GATC 1 cut(s) 257
BstMAI GTCTC 1 cut(s) 53
BstMBI GATC 1 cut(s) 254
BstMWI GCNNNNNNNGC 2 cut(s) 23, 632
BstNSI RCATGY 2 cut(s) 89, 716
BstSCI CCNGG 1 cut(s) 309
BstUI CGCG 1 cut(s) 262
BstV1I GCAGC 2 cut(s) 207, 562
Bsu15I ATCGAT 1 cut(s) 253
BsuRI GGCC 2 cut(s) 123, 790
BsuTUI ATCGAT 1 cut(s) 253
BtgZI GCGATG 1 cut(s) 243
BtsCI GGATG 3 cut(s) 377, 385, 572
BtsIMutI CAGTG 3 cut(s) 349, 591, 791
CfoI GCGC 1 cut(s) 367
ClaI ATCGAT 1 cut(s) 253
Csp6I GTAC 2 cut(s) 292, 543
CviAII CATG 5 cut(s) 72, 86, 224, 663, 713
CviQI GTAC 2 cut(s) 292, 543
DdeI CTNAG 1 cut(s) 717
DpnI GATC 1 cut(s) 256
DpnII GATC 1 cut(s) 254
EaeI YGGCCR 1 cut(s) 121
Eam1104I CTCTTC 2 cut(s) 170, 687
EarI CTCTTC 2 cut(s) 170, 687
Ecl136II GAGCTC 1 cut(s) 134
Eco24I GRGCYC 1 cut(s) 136
Eco31I GGTCTC 1 cut(s) 53
Eco53kI GAGCTC 1 cut(s) 134
Eco88I CYCGRG 1 cut(s) 767
EcoICRI GAGCTC 1 cut(s) 134
EcoRI GAATTC 1 cut(s) 91
EcoT22I ATGCAT 1 cut(s) 225
EcoT38I GRGCYC 1 cut(s) 136
FaeI CATG 5 cut(s) 75, 89, 227, 666, 716
FatI CATG 5 cut(s) 71, 85, 223, 662, 712
Fnu4HI GCNGC 3 cut(s) 196, 548, 551
FokI GGATG 3 cut(s) 384, 392, 559
FriOI GRGCYC 1 cut(s) 136
Fsp4HI GCNGC 3 cut(s) 196, 548, 551
FspBI CTAG 4 cut(s) 38, 462, 689, 792
GlaI GCGC 1 cut(s) 366
GluI GCNGC 3 cut(s) 196, 548, 551
GsaI CCCAGC 2 cut(s) 351, 371
GsuI CTGGAG 1 cut(s) 567
HaeIII GGCC 2 cut(s) 123, 790
HapII CCGG 1 cut(s) 310
HhaI GCGC 1 cut(s) 367
Hin1II CATG 5 cut(s) 75, 89, 227, 666, 716
Hin6I GCGC 1 cut(s) 365
HinP1I GCGC 1 cut(s) 365
HinfI GANTC 7 cut(s) 41, 126, 178, 227, 679, 778, 795
HpaII CCGG 1 cut(s) 310
HphI GGTGA 3 cut(s) 332, 364, 523
Hpy166II GTNNAC 2 cut(s) 543, 782
Hpy188I TCNGA 3 cut(s) 131, 241, 592
Hpy188III TCNNGA 1 cut(s) 38
Hpy8I GTNNAC 2 cut(s) 543, 782
HpyAV CCTTC 1 cut(s) 377
HpyCH4III ACNGT 1 cut(s) 786
HpyCH4V TGCA 6 cut(s) 223, 375, 415, 482, 504, 737
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 632
HpyF3I CTNAG 1 cut(s) 717
Hsp92II CATG 5 cut(s) 75, 89, 227, 666, 716
HspAI GCGC 1 cut(s) 365
Kzo9I GATC 1 cut(s) 254
LmnI GCTCC 2 cut(s) 22, 139
LpnPI CCDG 9 cut(s) 230, 280, 323, 333, 353, 405, 471, 597, 684
Lsp1109I GCAGC 2 cut(s) 207, 562
LweI GCATC 5 cut(s) 210, 362, 402, 491, 528
MaeI CTAG 4 cut(s) 38, 462, 689, 792
MaeIII GTNAC 1 cut(s) 320
MalI GATC 1 cut(s) 256
MboI GATC 1 cut(s) 254
MboII GAAGA 4 cut(s) 153, 187, 608, 674
MhlI GDGCHC 1 cut(s) 136
MluCI AATT 3 cut(s) 91, 231, 429
MlyI GAGTC 3 cut(s) 187, 673, 787
MmeI TCCRAC 1 cut(s) 688
MnlI CCTC 8 cut(s) 238, 282, 308, 311, 591, 645, 712, 763
Mph1103I ATGCAT 1 cut(s) 225
MroXI GAANNNNTTC 1 cut(s) 335
MseI TTAA 2 cut(s) 389, 675
MspI CCGG 1 cut(s) 310
MspR9I CCNGG 1 cut(s) 311
Mva1269I GAATGC 3 cut(s) 361, 504, 750
MvnI CGCG 1 cut(s) 262
MwoI GCNNNNNNNGC 2 cut(s) 23, 632
NciI CCSGG 1 cut(s) 311
NdeII GATC 1 cut(s) 254
NlaIII CATG 5 cut(s) 75, 89, 227, 666, 716
NlaIV GGNNCC 1 cut(s) 723
NmuCI GTSAC 1 cut(s) 320
NsiI ATGCAT 1 cut(s) 225
NspI RCATGY 2 cut(s) 89, 716
PaeR7I CTCGAG 1 cut(s) 767
PciI ACATGT 1 cut(s) 85
PctI GAATGC 3 cut(s) 361, 504, 750
PdmI GAANNNNTTC 1 cut(s) 335
PfeI GAWTC 3 cut(s) 41, 126, 227
PflMI CCANNNNNTGG 1 cut(s) 207
PkrI GCNGC 3 cut(s) 197, 549, 552
PleI GAGTC 3 cut(s) 186, 673, 786
PpsI GAGTC 3 cut(s) 186, 673, 786
PscI ACATGT 1 cut(s) 85
Psp124BI GAGCTC 1 cut(s) 136
PspFI CCCAGC 2 cut(s) 347, 367
PspN4I GGNNCC 1 cut(s) 723
PspXI VCTCGAGB 1 cut(s) 767
RsaI GTAC 2 cut(s) 293, 544
RsaNI GTAC 2 cut(s) 292, 543
SacI GAGCTC 1 cut(s) 136
SaqAI TTAA 2 cut(s) 389, 675
SatI GCNGC 3 cut(s) 196, 548, 551
Sau3AI GATC 1 cut(s) 254
SchI GAGTC 3 cut(s) 187, 673, 787
ScrFI CCNGG 1 cut(s) 311
SduI GDGCHC 1 cut(s) 136
SetI ASST 8 cut(s) 28, 136, 293, 322, 402, 449, 583, 774
SfaNI GCATC 5 cut(s) 210, 362, 402, 491, 528
Sfr274I CTCGAG 1 cut(s) 767
SlaI CTCGAG 1 cut(s) 767
SmlI CTYRAG 3 cut(s) 605, 649, 767
SmoI CTYRAG 3 cut(s) 605, 649, 767
SpeI ACTAGT 1 cut(s) 461
Sse9I AATT 3 cut(s) 91, 231, 429
SsiI CCGC 2 cut(s) 262, 548
SspMI CTAG 4 cut(s) 38, 462, 689, 792
SstI GAGCTC 1 cut(s) 136
StyD4I CCNGG 1 cut(s) 309
TaaI ACNGT 1 cut(s) 786
TaqI TCGA 4 cut(s) 181, 253, 742, 768
TasI AATT 3 cut(s) 91, 231, 429
TauI GCSGC 1 cut(s) 550
TfiI GAWTC 3 cut(s) 41, 126, 227
Tru1I TTAA 2 cut(s) 389, 675
Tru9I TTAA 2 cut(s) 389, 675
TscAI CASTG 3 cut(s) 349, 591, 791
TseFI GTSAC 1 cut(s) 320
TseI GCWGC 2 cut(s) 195, 550
Tsp45I GTSAC 1 cut(s) 320
TspDTI ATGAA 4 cut(s) 153, 328, 396, 609
TspGWI ACGGA 1 cut(s) 392
TspRI CASTG 3 cut(s) 349, 591, 791
Van91I CCANNNNNTGG 1 cut(s) 207
XapI RAATTY 1 cut(s) 91
XbaI TCTAGA 1 cut(s) 37
XceI RCATGY 2 cut(s) 89, 716
XhoI CTCGAG 1 cut(s) 767
XmnI GAANNNNTTC 1 cut(s) 335
XspI CTAG 4 cut(s) 38, 462, 689, 792
Zsp2I ATGCAT 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.