MD11G1027900.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0009340
Physical Location & Seq
Forward (+)
2434428 .. 2436768
2341 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1027900.v1.1.491

Sequence Viewer

Length: 810 bp
ATGCTGATGGTGTATGCTTCAGGAGCTATTACATATACAGATTCTGCTCATAATTTTTTACAGCATGAGGCAGTTTTACCCTGCAAGACTACCCATGTGAATTTCTTGAACAAAATCTCTATTTGTACTAACCCAATTGGAGCTCCTTGTAATTCTGCACTCTCTGCTTTCTACTTGTCATGGAGAAGCCGTAATCAGCTAAACAGCCCCAAGAAATGGCTATGCCGGATGAAGGATTCGATTCCATCGGATGATGAGTATCGATCATCGCGCAACATAGCAATCAGTTTATTTAGGCGGTACAGGAATGTGGTCGACCGTGGAGGAGGTGCCAACCTAAACGAGTTCATCAGTGCTGGGGTGAATGCTTATGCACTGGGCTGCACAGACGAGGGATTAAGAAAAGAACTGCTTGATATGAAAGAATCTGGTGTTGAAATTGAAGGAATGCAAAGTTATGGTGGAACCACCAGTTTCAAATTCAAGATCGCATCGGAGGAGGTTGATGAGTGCATTCTGTGGTTGAGCATTATATTCATCACCATATTGTGTACGCCACAGCCAACAATAGTTAGATGGTCATCCATACCTCCAGTATCAGACGAAGAAAGGCTTAAATGGAAAGGCTTTTGTGCACTCATAGCAAATGCGTATTATGTGAGAGGAATGGCATGGCTTCCAGTAAAGACACTTCAACTAGAGCAATTGGCAGTGGTTGGACAAGCCGAGGAATCATCAGTTGTTGCAAGTCGAATGCAATTAGTTTTTAGCACACTTGAGGTTGTGAGTCCACACTGGCCTAGAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

270

Amino Acids

30.13

Weight (kDa)

7.54

Isoelectric Point (pI)

52.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7876 PF25286 79 - 267 2.6e-102 Domain of unknown function (DUF7876)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 329
AccB7I CCANNNNNTGG 1 cut(s) 216
AccI GTMKAC 1 cut(s) 315
AccII CGCG 1 cut(s) 271
AciI CCGC 1 cut(s) 298
AcsI RAATTY 2 cut(s) 100, 479
AfaI GTAC 3 cut(s) 127, 302, 553
AfiI CCNNNNNNNGG 2 cut(s) 216, 232
AgsI TTSAA 6 cut(s) 109, 437, 443, 478, 484, 695
AluBI AGCT 3 cut(s) 26, 143, 199
AluI AGCT 3 cut(s) 26, 143, 199
Alw21I GWGCWC 2 cut(s) 145, 637
Alw44I GTGCAC 1 cut(s) 633
AlwNI CAGNNNCTG 1 cut(s) 44
AoxI GGCC 1 cut(s) 797
ApaLI GTGCAC 1 cut(s) 633
ApeKI GCWGC 1 cut(s) 381
ApoI RAATTY 2 cut(s) 100, 479
AspLEI GCGC 1 cut(s) 273
AsuHPI GGTGA 2 cut(s) 373, 532
BaeGI GKGCMC 1 cut(s) 637
BanI GGYRCC 1 cut(s) 329
BanII GRGCYC 1 cut(s) 145
BarI GAAGNNNNNNTAC 2 cut(s) 675, 707
Bbv12I GWGCWC 2 cut(s) 145, 637
BbvI GCAGC 1 cut(s) 368
BccI CCATC 2 cut(s) 253, 570
BceAI ACGGC 1 cut(s) 174
BfaI CTAG 2 cut(s) 698, 801
BisI GCNGC 1 cut(s) 382
BlsI GCNGC 1 cut(s) 383
BmiI GGNNCC 2 cut(s) 331, 466
BmrI ACTGGG 1 cut(s) 386
BmsI GCATC 1 cut(s) 500
BmuI ACTGGG 1 cut(s) 386
BpmI CTGGAG 1 cut(s) 576
BpuEI CTTGAG 1 cut(s) 797
Bsa29I ATCGAT 1 cut(s) 262
BsaBI GATNNNNATC 2 cut(s) 258, 580
BsaJI CCNNGG 2 cut(s) 319, 726
BsaXI ACNNNNNCTCC 2 cut(s) 175, 205
Bsc4I CCNNNNNNNGG 2 cut(s) 216, 232
Bse1I ACTGG 5 cut(s) 381, 471, 593, 680, 800
Bse8I GATNNNNATC 2 cut(s) 258, 580
BseCI ATCGAT 1 cut(s) 262
BseDI CCNNGG 2 cut(s) 319, 726
BseGI GGATG 3 cut(s) 234, 256, 581
BseJI GATNNNNATC 2 cut(s) 258, 580
BseLI CCNNNNNNNGG 2 cut(s) 216, 232
BseNI ACTGG 5 cut(s) 381, 471, 593, 680, 800
BseRI GAGGAG 2 cut(s) 339, 512
BseSI GKGCMC 1 cut(s) 637
BseXI GCAGC 1 cut(s) 368
BseYI CCCAGC 1 cut(s) 356
BsgI GTGCAG 2 cut(s) 141, 367
Bsh1236I CGCG 1 cut(s) 271
Bsh1285I CGRYCG 1 cut(s) 319
BshFI GGCC 1 cut(s) 799
BshNI GGYRCC 1 cut(s) 329
BshVI ATCGAT 1 cut(s) 262
BsiEI CGRYCG 1 cut(s) 319
BsiHKAI GWGCWC 2 cut(s) 145, 637
BsiSI CCGG 1 cut(s) 226
BslI CCNNNNNNNGG 2 cut(s) 216, 232
BsmI GAATGC 4 cut(s) 370, 453, 513, 759
BsnI GGCC 1 cut(s) 799
Bsp1286I GDGCHC 2 cut(s) 145, 637
Bsp143I GATC 2 cut(s) 263, 486
BspACI CCGC 1 cut(s) 298
BspANI GGCC 1 cut(s) 799
BspDI ATCGAT 1 cut(s) 262
BspFNI CGCG 1 cut(s) 271
BspLI GGNNCC 2 cut(s) 331, 466
BspT107I GGYRCC 1 cut(s) 329
BsrI ACTGG 5 cut(s) 381, 471, 593, 680, 800
BssECI CCNNGG 2 cut(s) 319, 726
BssMI GATC 2 cut(s) 263, 486
Bst4CI ACNGT 1 cut(s) 320
BstAPI GCANNNNNTGC 1 cut(s) 164
BstDSI CCRYGG 1 cut(s) 319
BstF5I GGATG 3 cut(s) 234, 256, 581
BstFNI CGCG 1 cut(s) 271
BstHHI GCGC 1 cut(s) 273
BstKTI GATC 2 cut(s) 266, 489
BstMBI GATC 2 cut(s) 263, 486
BstMCI CGRYCG 1 cut(s) 319
BstMWI GCNNNNNNNGC 3 cut(s) 23, 164, 641
BstSLI GKGCMC 1 cut(s) 637
BstUI CGCG 1 cut(s) 271
BstV1I GCAGC 1 cut(s) 368
Bsu15I ATCGAT 1 cut(s) 262
BsuRI GGCC 1 cut(s) 799
BsuTUI ATCGAT 1 cut(s) 262
BtgI CCRYGG 1 cut(s) 319
BtgZI GCGATG 1 cut(s) 252
BtsCI GGATG 3 cut(s) 234, 256, 581
BtsI GCAGTG 1 cut(s) 717
BtsIMutI CAGTG 4 cut(s) 358, 374, 717, 793
CaiI CAGNNNCTG 1 cut(s) 44
CfoI GCGC 1 cut(s) 273
ClaI ATCGAT 1 cut(s) 262
Csp6I GTAC 3 cut(s) 126, 301, 552
CviAII CATG 4 cut(s) 65, 95, 180, 672
CviQI GTAC 3 cut(s) 126, 301, 552
DpnI GATC 2 cut(s) 265, 488
DpnII GATC 2 cut(s) 263, 486
Ecl136II GAGCTC 1 cut(s) 143
Eco24I GRGCYC 1 cut(s) 145
Eco53kI GAGCTC 1 cut(s) 143
EcoICRI GAGCTC 1 cut(s) 143
EcoT38I GRGCYC 1 cut(s) 145
FaeI CATG 4 cut(s) 68, 98, 183, 675
FalI AAGNNNNNCTT 4 cut(s) 396, 428, 597, 629
FatI CATG 4 cut(s) 64, 94, 179, 671
FblI GTMKAC 1 cut(s) 315
Fnu4HI GCNGC 1 cut(s) 382
FokI GGATG 3 cut(s) 241, 263, 568
FriOI GRGCYC 1 cut(s) 145
Fsp4HI GCNGC 1 cut(s) 382
FspBI CTAG 2 cut(s) 698, 801
GlaI GCGC 1 cut(s) 272
GluI GCNGC 1 cut(s) 382
GsaI CCCAGC 1 cut(s) 360
GsuI CTGGAG 1 cut(s) 576
HaeIII GGCC 1 cut(s) 799
HapII CCGG 1 cut(s) 226
HhaI GCGC 1 cut(s) 273
Hin1II CATG 4 cut(s) 68, 98, 183, 675
Hin6I GCGC 1 cut(s) 271
HinP1I GCGC 1 cut(s) 271
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HinfI GANTC 6 cut(s) 41, 236, 241, 425, 731, 787
HpaII CCGG 1 cut(s) 226
HphI GGTGA 2 cut(s) 373, 532
Hpy166II GTNNAC 4 cut(s) 316, 552, 635, 791
Hpy188I TCNGA 3 cut(s) 250, 496, 601
Hpy188III TCNNGA 3 cut(s) 21, 106, 484
Hpy8I GTNNAC 4 cut(s) 316, 552, 635, 791
HpyAV CCTTC 2 cut(s) 226, 437
HpyCH4III ACNGT 1 cut(s) 320
HpyCH4V TGCA 9 cut(s) 84, 158, 374, 384, 451, 513, 635, 746, 757
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 164, 641
Hsp92II CATG 4 cut(s) 68, 98, 183, 675
HspAI GCGC 1 cut(s) 271
Kzo9I GATC 2 cut(s) 263, 486
LmnI GCTCC 3 cut(s) 23, 140, 148
Lsp1109I GCAGC 1 cut(s) 368
LweI GCATC 1 cut(s) 500
MaeI CTAG 2 cut(s) 698, 801
MalI GATC 2 cut(s) 265, 488
MboI GATC 2 cut(s) 263, 486
MboII GAAGA 1 cut(s) 617
MfeI CAATTG 2 cut(s) 135, 704
MhlI GDGCHC 2 cut(s) 145, 637
MluCI AATT 8 cut(s) 52, 100, 135, 151, 438, 479, 704, 758
MlyI GAGTC 1 cut(s) 796
MmeI TCCRAC 1 cut(s) 697
MseI TTAA 2 cut(s) 398, 615
MspI CCGG 1 cut(s) 226
MunI CAATTG 2 cut(s) 135, 704
Mva1269I GAATGC 4 cut(s) 370, 453, 513, 759
MvnI CGCG 1 cut(s) 271
MwoI GCNNNNNNNGC 3 cut(s) 23, 164, 641
NdeII GATC 2 cut(s) 263, 486
NlaIII CATG 4 cut(s) 68, 98, 183, 675
NlaIV GGNNCC 2 cut(s) 331, 466
NmeAIII GCCGAG 1 cut(s) 751
PctI GAATGC 4 cut(s) 370, 453, 513, 759
PfeI GAWTC 5 cut(s) 41, 236, 241, 425, 731
PflMI CCANNNNNTGG 1 cut(s) 216
PkrI GCNGC 1 cut(s) 383
PleI GAGTC 1 cut(s) 795
PpsI GAGTC 1 cut(s) 795
Psp124BI GAGCTC 1 cut(s) 145
PspFI CCCAGC 1 cut(s) 356
PspN4I GGNNCC 2 cut(s) 331, 466
PstNI CAGNNNCTG 1 cut(s) 44
RsaI GTAC 3 cut(s) 127, 302, 553
RsaNI GTAC 3 cut(s) 126, 301, 552
SacI GAGCTC 1 cut(s) 145
SalI GTCGAC 1 cut(s) 314
SaqAI TTAA 2 cut(s) 398, 615
SatI GCNGC 1 cut(s) 382
Sau3AI GATC 2 cut(s) 263, 486
SchI GAGTC 1 cut(s) 796
SduI GDGCHC 2 cut(s) 145, 637
SetI ASST 8 cut(s) 28, 145, 201, 331, 339, 504, 592, 783
SfaNI GCATC 1 cut(s) 500
SmlI CTYRAG 1 cut(s) 776
SmoI CTYRAG 1 cut(s) 776
Sse9I AATT 8 cut(s) 52, 100, 135, 151, 438, 479, 704, 758
SsiI CCGC 1 cut(s) 298
SspMI CTAG 2 cut(s) 698, 801
SstI GAGCTC 1 cut(s) 145
TaaI ACNGT 1 cut(s) 320
TaqI TCGA 4 cut(s) 239, 262, 315, 751
TasI AATT 8 cut(s) 52, 100, 135, 151, 438, 479, 704, 758
TatI WGTACW 1 cut(s) 125
TfiI GAWTC 5 cut(s) 41, 236, 241, 425, 731
Tru1I TTAA 2 cut(s) 398, 615
Tru9I TTAA 2 cut(s) 398, 615
TscAI CASTG 4 cut(s) 358, 381, 717, 800
TseI GCWGC 1 cut(s) 381
TspDTI ATGAA 4 cut(s) 245, 337, 434, 526
TspRI CASTG 4 cut(s) 358, 381, 717, 800
Van91I CCANNNNNTGG 1 cut(s) 216
VneI GTGCAC 1 cut(s) 633
XapI RAATTY 2 cut(s) 100, 479
XmiI GTMKAC 1 cut(s) 315
XspI CTAG 2 cut(s) 698, 801
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.