Rroxscaffold_1G00004540

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0009340
Physical Location & Seq
Forward (+)
6238933 .. 6242101
3169 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00004540.1

Sequence Viewer

Length: 816 bp
ATGTTGATGGTTTATGCTCCAAGAGCTGTTACATGTCTAGATTCTCATATACTGAATGAGACATTATTACCCTGTAAGAATACAAATGTGAATTCCTTAAACAATGTTTCAATCGGTCTTGGCCCGATTCGAGCACCTTGTAGTTCTATATTGTCTGCTTCTTCGTTTTATTGGAAAAGCCGAAATCAGCTGAGCAGTACCAAGAAATGGCTATGCCAGATGCATGATTCAATTCCATCAGATGACGAGTATCGATCATCGAGGAACATAGCAATCAGTTTGTTCAGGCGGTACAGGAATGTGCTTGACCGTGGAGGAGGTGACAACCTAAAAGAGTTCATTAGTGCTGGGGTAAATGCGTATGCACTGGGATGCACAGATGAGGGATTGAGAAAAGAGCTTATTGATATGAAGCAATCTGGGGTTGAAATTGAAGCAATGGAGAGCTATAGTGGAAGCACCAGTTTGAAATCCAAGATTGCAGCAGGGGAGGCAAGTTCGTCTTCCATTGATGAGTGCATCCTGTGGTTGAGCATTATATTTATCACCATCTTGTGTACACCACAACCGACAATAGTTAGATGGTCATCCACACCTCCAGTGTCAGATGAAGAAAGGCTCAAGTGGAAAGGTTTTTGTGCGGTCATAGCAAATGCTTATTACTTGAGGGGAATGGCATGGCTCCCCGTAAAGACTCTTCAACTAGAGCAAATGGCAGTAGTTGGACAAGCTGAGGAACCATCTGTTGTTGCAAGTCGAATGCGATTAGTGTTTAGCACACTCGAGGTTGTGAGTCCACAGTGGCCTAAAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

271

Amino Acids

30.04

Weight (kDa)

8.08

Isoelectric Point (pI)

60.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7876 PF25286 75 - 269 1.7e-103 Domain of unknown function (DUF7876)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 207
AciI CCGC 2 cut(s) 289, 641
AcsI RAATTY 1 cut(s) 91
AfaI GTAC 3 cut(s) 199, 293, 559
AfiI CCNNNNNNNGG 1 cut(s) 207
AflIII ACRYGT 1 cut(s) 32
AgsI TTSAA 6 cut(s) 111, 231, 428, 434, 469, 701
AluBI AGCT 5 cut(s) 26, 190, 400, 447, 731
AluI AGCT 5 cut(s) 26, 190, 400, 447, 731
Alw21I GWGCWC 1 cut(s) 136
Alw26I GTCTC 1 cut(s) 53
Ama87I CYCGRG 1 cut(s) 782
AoxI GGCC 2 cut(s) 121, 803
ApeKI GCWGC 1 cut(s) 482
ApoI RAATTY 1 cut(s) 91
AspS9I GGNCC 1 cut(s) 122
AsuHPI GGTGA 2 cut(s) 332, 538
AvaI CYCGRG 1 cut(s) 782
BarI GAAGNNNNNNTAC 2 cut(s) 681, 713
BbsI GAAGAC 1 cut(s) 495
Bbv12I GWGCWC 1 cut(s) 136
BbvCI CCTCAGC 1 cut(s) 732
BbvI GCAGC 1 cut(s) 494
BccI CCATC 4 cut(s) 244, 557, 576, 748
BcoDI GTCTC 1 cut(s) 53
BfaI CTAG 2 cut(s) 38, 704
BfmI CTRYAG 1 cut(s) 448
BisI GCNGC 1 cut(s) 483
BlpI GCTNAGC 1 cut(s) 191
BlsI GCNGC 1 cut(s) 484
BmeT110I CYCGRG 1 cut(s) 782
BmgT120I GGNCC 1 cut(s) 122
BmiI GGNNCC 2 cut(s) 683, 738
BmrI ACTGGG 1 cut(s) 377
BmsI GCATC 3 cut(s) 210, 362, 528
BmuI ACTGGG 1 cut(s) 377
BpiI GAAGAC 1 cut(s) 495
BpmI CTGGAG 1 cut(s) 582
Bpu10I CCTNAGC 1 cut(s) 732
Bpu1102I GCTNAGC 1 cut(s) 191
BpuEI CTTGAG 2 cut(s) 605, 685
Bsa29I ATCGAT 1 cut(s) 253
BsaBI GATNNNNATC 1 cut(s) 586
BsaJI CCNNGG 1 cut(s) 310
Bsc4I CCNNNNNNNGG 1 cut(s) 207
Bse1I ACTGG 3 cut(s) 372, 462, 599
Bse3DI GCAATG 1 cut(s) 444
Bse8I GATNNNNATC 1 cut(s) 586
BseCI ATCGAT 1 cut(s) 253
BseDI CCNNGG 1 cut(s) 310
BseGI GGATG 3 cut(s) 377, 519, 587
BseJI GATNNNNATC 1 cut(s) 586
BseLI CCNNNNNNNGG 1 cut(s) 207
BseMI GCAATG 1 cut(s) 444
BseMII CTCAG 2 cut(s) 182, 723
BseNI ACTGG 3 cut(s) 372, 462, 599
BseRI GAGGAG 1 cut(s) 330
BseXI GCAGC 1 cut(s) 494
BseYI CCCAGC 1 cut(s) 347
BshFI GGCC 2 cut(s) 123, 805
BshVI ATCGAT 1 cut(s) 253
BsiHKAI GWGCWC 1 cut(s) 136
BsiHKCI CYCGRG 1 cut(s) 782
BslI CCNNNNNNNGG 1 cut(s) 207
BsmAI GTCTC 1 cut(s) 53
BsmI GAATGC 1 cut(s) 765
BsnI GGCC 2 cut(s) 123, 805
BsoBI CYCGRG 1 cut(s) 782
Bsp1286I GDGCHC 1 cut(s) 136
Bsp1407I TGTACA 1 cut(s) 557
Bsp143I GATC 1 cut(s) 254
Bsp1720I GCTNAGC 1 cut(s) 191
BspACI CCGC 2 cut(s) 289, 641
BspANI GGCC 2 cut(s) 123, 805
BspCNI CTCAG 2 cut(s) 183, 724
BspDI ATCGAT 1 cut(s) 253
BspLI GGNNCC 2 cut(s) 683, 738
BsrDI GCAATG 1 cut(s) 444
BsrGI TGTACA 1 cut(s) 557
BsrI ACTGG 3 cut(s) 372, 462, 599
BssECI CCNNGG 1 cut(s) 310
BssMI GATC 1 cut(s) 254
Bst4CI ACNGT 2 cut(s) 311, 801
Bst6I CTCTTC 1 cut(s) 702
BstAUI TGTACA 1 cut(s) 557
BstDEI CTNAG 2 cut(s) 191, 732
BstDSI CCRYGG 1 cut(s) 310
BstF5I GGATG 3 cut(s) 377, 519, 587
BstKTI GATC 1 cut(s) 257
BstMAI GTCTC 1 cut(s) 53
BstMBI GATC 1 cut(s) 254
BstMWI GCNNNNNNNGC 3 cut(s) 23, 491, 647
BstNSI RCATGY 1 cut(s) 36
BstSFI CTRYAG 1 cut(s) 448
BstV1I GCAGC 1 cut(s) 494
BstV2I GAAGAC 1 cut(s) 495
Bsu15I ATCGAT 1 cut(s) 253
BsuRI GGCC 2 cut(s) 123, 805
BsuTUI ATCGAT 1 cut(s) 253
BtgI CCRYGG 1 cut(s) 310
BtsCI GGATG 3 cut(s) 377, 519, 587
BtsIMutI CAGTG 3 cut(s) 365, 606, 806
Cfr13I GGNCC 1 cut(s) 122
ClaI ATCGAT 1 cut(s) 253
Csp6I GTAC 3 cut(s) 198, 292, 558
CviAII CATG 3 cut(s) 33, 224, 678
CviQI GTAC 3 cut(s) 198, 292, 558
DdeI CTNAG 2 cut(s) 191, 732
DpnI GATC 1 cut(s) 256
DpnII GATC 1 cut(s) 254
Eam1104I CTCTTC 1 cut(s) 702
EarI CTCTTC 1 cut(s) 702
Eco88I CYCGRG 1 cut(s) 782
EcoRI GAATTC 1 cut(s) 91
EcoT22I ATGCAT 1 cut(s) 225
FaeI CATG 3 cut(s) 36, 227, 681
FalI AAGNNNNNCTT 2 cut(s) 487, 519
FatI CATG 3 cut(s) 32, 223, 677
Fnu4HI GCNGC 1 cut(s) 483
FokI GGATG 3 cut(s) 384, 506, 574
Fsp4HI GCNGC 1 cut(s) 483
FspBI CTAG 2 cut(s) 38, 704
GluI GCNGC 1 cut(s) 483
GsaI CCCAGC 1 cut(s) 351
GsuI CTGGAG 1 cut(s) 582
HaeIII GGCC 2 cut(s) 123, 805
Hin1II CATG 3 cut(s) 36, 227, 681
HinfI GANTC 5 cut(s) 41, 127, 227, 694, 793
HphI GGTGA 2 cut(s) 332, 538
Hpy166II GTNNAC 3 cut(s) 558, 560, 797
Hpy188I TCNGA 2 cut(s) 241, 607
Hpy188III TCNNGA 1 cut(s) 38
Hpy8I GTNNAC 3 cut(s) 558, 560, 797
HpyCH4III ACNGT 2 cut(s) 311, 801
HpyCH4V TGCA 6 cut(s) 223, 365, 375, 482, 519, 752
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 491, 647
HpyF3I CTNAG 2 cut(s) 191, 732
Hsp92II CATG 3 cut(s) 36, 227, 681
Kzo9I GATC 1 cut(s) 254
LmnI GCTCC 2 cut(s) 22, 687
Lsp1109I GCAGC 1 cut(s) 494
LweI GCATC 3 cut(s) 210, 362, 528
MaeI CTAG 2 cut(s) 38, 704
MaeIII GTNAC 2 cut(s) 28, 320
MalI GATC 1 cut(s) 256
MboI GATC 1 cut(s) 254
MboII GAAGA 4 cut(s) 153, 495, 623, 689
MhlI GDGCHC 1 cut(s) 136
MluCI AATT 3 cut(s) 91, 231, 429
MlyI GAGTC 2 cut(s) 688, 802
MmeI TCCRAC 1 cut(s) 703
MnlI CCTC 9 cut(s) 255, 308, 311, 376, 484, 606, 660, 727, 778
Mph1103I ATGCAT 1 cut(s) 225
MseI TTAA 1 cut(s) 98
MslI CAYNNNNRTG 1 cut(s) 370
MspA1I CMGCKG 1 cut(s) 190
Mva1269I GAATGC 1 cut(s) 765
MwoI GCNNNNNNNGC 3 cut(s) 23, 491, 647
NdeII GATC 1 cut(s) 254
NlaIII CATG 3 cut(s) 36, 227, 681
NlaIV GGNNCC 2 cut(s) 683, 738
NmuCI GTSAC 1 cut(s) 320
NsiI ATGCAT 1 cut(s) 225
NspI RCATGY 1 cut(s) 36
PaeR7I CTCGAG 1 cut(s) 782
PciI ACATGT 1 cut(s) 32
PctI GAATGC 1 cut(s) 765
PfeI GAWTC 3 cut(s) 41, 127, 227
PflMI CCANNNNNTGG 1 cut(s) 207
PkrI GCNGC 1 cut(s) 484
PleI GAGTC 2 cut(s) 688, 801
PpsI GAGTC 2 cut(s) 688, 801
PscI ACATGT 1 cut(s) 32
PspFI CCCAGC 1 cut(s) 347
PspN4I GGNNCC 2 cut(s) 683, 738
PspPI GGNCC 1 cut(s) 122
PspXI VCTCGAGB 1 cut(s) 782
PvuII CAGCTG 1 cut(s) 190
RsaI GTAC 3 cut(s) 199, 293, 559
RsaNI GTAC 3 cut(s) 198, 292, 558
RseI CAYNNNNRTG 1 cut(s) 370
SaqAI TTAA 1 cut(s) 98
SatI GCNGC 1 cut(s) 483
Sau3AI GATC 1 cut(s) 254
Sau96I GGNCC 1 cut(s) 122
SchI GAGTC 2 cut(s) 688, 802
SduI GDGCHC 1 cut(s) 136
SfaNI GCATC 3 cut(s) 210, 362, 528
SfcI CTRYAG 1 cut(s) 448
Sfr274I CTCGAG 1 cut(s) 782
SlaI CTCGAG 1 cut(s) 782
SmiMI CAYNNNNRTG 1 cut(s) 370
SmlI CTYRAG 3 cut(s) 620, 664, 782
SmoI CTYRAG 3 cut(s) 620, 664, 782
Sse9I AATT 3 cut(s) 91, 231, 429
SsiI CCGC 2 cut(s) 289, 641
SspMI CTAG 2 cut(s) 38, 704
TaaI ACNGT 2 cut(s) 311, 801
TaqI TCGA 5 cut(s) 130, 253, 260, 757, 783
TaqII GACCGA 1 cut(s) 104
TasI AATT 3 cut(s) 91, 231, 429
TatI WGTACW 1 cut(s) 557
TfiI GAWTC 3 cut(s) 41, 127, 227
Tru1I TTAA 1 cut(s) 98
Tru9I TTAA 1 cut(s) 98
TscAI CASTG 3 cut(s) 372, 606, 806
TseFI GTSAC 1 cut(s) 320
TseI GCWGC 1 cut(s) 482
Tsp45I GTSAC 1 cut(s) 320
TspDTI ATGAA 3 cut(s) 328, 425, 624
TspRI CASTG 3 cut(s) 372, 606, 806
Van91I CCANNNNNTGG 1 cut(s) 207
XapI RAATTY 1 cut(s) 91
XbaI TCTAGA 1 cut(s) 37
XceI RCATGY 1 cut(s) 36
XhoI CTCGAG 1 cut(s) 782
XspI CTAG 2 cut(s) 38, 704
Zsp2I ATGCAT 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.