Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0009340

Physical Location & Seq

Genomic Coordinates Forward (+)

1857935 .. 1859689

Gene Structure 1755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g02150.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGCTGATGGTGTATGCTTCAGGAGCTATTACATATACAGATTCTGCTCATAATTTTTTACAGCATGAGGCAGTTTTACCCTGCAAGACTACCCATGTGAATTTCTTGAACAAAATCTCTATTTGTACTAACCCAATTGGAGCTCCTTGTAATTCTGCACTCTCTGCTTTCTACTTGTCATGGAGAAGTCGTAATCAGCTAAACAGCCCCAAGAAATGTGCCGGATGCAGGATTCGATTCCATCTGATGATGAGTATCGATCGATCGCGCAACATAGCAATCAGTTTATTTAGGCGGTACAGGAATGTGGTCGACCGTGGAGGAGGTGCCAACCTAAACGAGTTCATCAGTGCTGGGGTGAATGCTTATGCACTGGGCTGCACAGACGAGGGATTAAGAAAAGAACTGCTTGATATGAAAGAATCTGGTGTTGAAATTGAAGGAATGCAAAGCTATGGTGGAACCACCAGTTTGAAATTCAAGATCGCATCGGAGGAGGTTGATGAGTGCATTCTGTGGTTGAGCATTATATTCATCACCATATTGTGTACGCCACAGCCAACAATAGTTAGATGGTCATCCATACCTCCAGTGTCGGACGAAGAAAGGCTTAAATGGAAAGGCTTTTGTGCACTCATAGCAAATGCGTATTATGTGAGAGGAATGGCATGGCTTCCAGTAAAGACACTTCAACTAGAGCAAATGGCAGTGGTTGGACAAGCCGAGGAACCATCAGTTGTTGCAAGTCGAATGCGATTAGTTTTTAGCACACTTGAGGTTGTGAGTCCACACTGGCCTAGAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

269

Amino Acids

29.96

Weight (kDa)

8.72

Isoelectric Point (pI)

52.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009340)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62250 AT1G62250 AT1G62250
fragaria_vesca	FvH4_3g43300 FvH4_3g43300
malus_domestica	MD11G1027900.v1.1
prunus_persica	Prupe.6G022000_v2.0.a1 Prupe.6G022000_v2.0.a1 Prupe.6G022000_v2.0.a1 Prupe.6G022000_v2.0.a1
pyrus_communis	pycom03g01960 pycom11g02150
rosa_chinensis	RchiOBHm_Chr5g0077361
rosa_laevigata	RLG00000036691
rosa_multiflora	Rmu_co8301417.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004540
rosa_rugosa	Rorug05G0454500
rosa_samantha	Rh5AG509400 Rh5BG530900 Rh5CG555200 Rh5DG543100
rosa_wichuraiana	Rw5G046810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	326
AccI	GTMKAC	1 cut(s)	312
AccII	CGCG	1 cut(s)	268
AciI	CCGC	1 cut(s)	295
AcsI	RAATTY	2 cut(s)	100, 476
AfaI	GTAC	3 cut(s)	127, 299, 550
AfiI	CCNNNNNNNGG	1 cut(s)	228
AgsI	TTSAA	6 cut(s)	109, 434, 440, 475, 481, 692
AluBI	AGCT	4 cut(s)	26, 143, 199, 453
AluI	AGCT	4 cut(s)	26, 143, 199, 453
Alw21I	GWGCWC	2 cut(s)	145, 634
Alw44I	GTGCAC	1 cut(s)	630
AlwNI	CAGNNNCTG	1 cut(s)	44
AoxI	GGCC	1 cut(s)	794
ApaLI	GTGCAC	1 cut(s)	630
ApeKI	GCWGC	1 cut(s)	378
ApoI	RAATTY	2 cut(s)	100, 476
AspLEI	GCGC	1 cut(s)	270
AsuHPI	GGTGA	2 cut(s)	370, 529
BaeGI	GKGCMC	1 cut(s)	634
BanI	GGYRCC	1 cut(s)	326
BanII	GRGCYC	1 cut(s)	145
BarI	GAAGNNNNNNTAC	2 cut(s)	672, 704
Bbv12I	GWGCWC	2 cut(s)	145, 634
BbvI	GCAGC	1 cut(s)	365
BccI	CCATC	3 cut(s)	249, 567, 739
BfaI	CTAG	2 cut(s)	695, 798
BisI	GCNGC	1 cut(s)	379
BlsI	GCNGC	1 cut(s)	380
BmiI	GGNNCC	3 cut(s)	328, 463, 729
BmrI	ACTGGG	1 cut(s)	383
BmsI	GCATC	2 cut(s)	215, 497
BmuI	ACTGGG	1 cut(s)	383
BpmI	CTGGAG	1 cut(s)	573
BpuEI	CTTGAG	1 cut(s)	794
Bsa29I	ATCGAT	2 cut(s)	258, 262
BsaBI	GATNNNNATC	2 cut(s)	254, 577
BsaJI	CCNNGG	2 cut(s)	316, 723
BsaXI	ACNNNNNCTCC	2 cut(s)	175, 205
Bsc4I	CCNNNNNNNGG	1 cut(s)	228
Bse1I	ACTGG	5 cut(s)	378, 468, 590, 677, 797
Bse8I	GATNNNNATC	2 cut(s)	254, 577
BseCI	ATCGAT	2 cut(s)	258, 262
BseDI	CCNNGG	2 cut(s)	316, 723
BseGI	GGATG	2 cut(s)	230, 578
BseJI	GATNNNNATC	2 cut(s)	254, 577
BseLI	CCNNNNNNNGG	1 cut(s)	228
BseNI	ACTGG	5 cut(s)	378, 468, 590, 677, 797
BseRI	GAGGAG	2 cut(s)	336, 509
BseSI	GKGCMC	1 cut(s)	634
BseXI	GCAGC	1 cut(s)	365
BseYI	CCCAGC	1 cut(s)	353
BsgI	GTGCAG	2 cut(s)	141, 364
Bsh1236I	CGCG	1 cut(s)	268
Bsh1285I	CGRYCG	3 cut(s)	262, 266, 316
BshFI	GGCC	1 cut(s)	796
BshNI	GGYRCC	1 cut(s)	326
BshVI	ATCGAT	2 cut(s)	258, 262
BsiEI	CGRYCG	3 cut(s)	262, 266, 316
BsiHKAI	GWGCWC	2 cut(s)	145, 634
BsiSI	CCGG	1 cut(s)	222
BslI	CCNNNNNNNGG	1 cut(s)	228
BsmI	GAATGC	4 cut(s)	367, 450, 510, 756
BsnI	GGCC	1 cut(s)	796
Bsp1286I	GDGCHC	2 cut(s)	145, 634
Bsp143I	GATC	3 cut(s)	259, 263, 483
BspACI	CCGC	1 cut(s)	295
BspANI	GGCC	1 cut(s)	796
BspDI	ATCGAT	2 cut(s)	258, 262
BspFNI	CGCG	1 cut(s)	268
BspLI	GGNNCC	3 cut(s)	328, 463, 729
BspT107I	GGYRCC	1 cut(s)	326
BsrI	ACTGG	5 cut(s)	378, 468, 590, 677, 797
BssECI	CCNNGG	2 cut(s)	316, 723
BssMI	GATC	3 cut(s)	259, 263, 483
Bst4CI	ACNGT	1 cut(s)	317
BstAPI	GCANNNNNTGC	1 cut(s)	164
BstDSI	CCRYGG	1 cut(s)	316
BstF5I	GGATG	2 cut(s)	230, 578
BstFNI	CGCG	1 cut(s)	268
BstHHI	GCGC	1 cut(s)	270
BstKTI	GATC	3 cut(s)	262, 266, 486
BstMBI	GATC	3 cut(s)	259, 263, 483
BstMCI	CGRYCG	3 cut(s)	262, 266, 316
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 164, 638
BstSLI	GKGCMC	1 cut(s)	634
BstUI	CGCG	1 cut(s)	268
BstV1I	GCAGC	1 cut(s)	365
Bsu15I	ATCGAT	2 cut(s)	258, 262
BsuRI	GGCC	1 cut(s)	796
BsuTUI	ATCGAT	2 cut(s)	258, 262
BtgI	CCRYGG	1 cut(s)	316
BtsCI	GGATG	2 cut(s)	230, 578
BtsI	GCAGTG	1 cut(s)	714
BtsIMutI	CAGTG	5 cut(s)	355, 371, 597, 714, 790
CaiI	CAGNNNCTG	1 cut(s)	44
CfoI	GCGC	1 cut(s)	270
ClaI	ATCGAT	2 cut(s)	258, 262
Csp6I	GTAC	3 cut(s)	126, 298, 549
CviAII	CATG	4 cut(s)	65, 95, 180, 669
CviQI	GTAC	3 cut(s)	126, 298, 549
DpnI	GATC	3 cut(s)	261, 265, 485
DpnII	GATC	3 cut(s)	259, 263, 483
Ecl136II	GAGCTC	1 cut(s)	143
Eco24I	GRGCYC	1 cut(s)	145
Eco53kI	GAGCTC	1 cut(s)	143
EcoICRI	GAGCTC	1 cut(s)	143
EcoT38I	GRGCYC	1 cut(s)	145
FaeI	CATG	4 cut(s)	68, 98, 183, 672
FalI	AAGNNNNNCTT	4 cut(s)	393, 425, 594, 626
FatI	CATG	4 cut(s)	64, 94, 179, 668
FblI	GTMKAC	1 cut(s)	312
Fnu4HI	GCNGC	1 cut(s)	379
FokI	GGATG	2 cut(s)	237, 565
FriOI	GRGCYC	1 cut(s)	145
Fsp4HI	GCNGC	1 cut(s)	379
FspBI	CTAG	2 cut(s)	695, 798
GlaI	GCGC	1 cut(s)	269
GluI	GCNGC	1 cut(s)	379
GsaI	CCCAGC	1 cut(s)	357
GsuI	CTGGAG	1 cut(s)	573
HaeIII	GGCC	1 cut(s)	796
HapII	CCGG	1 cut(s)	222
HhaI	GCGC	1 cut(s)	270
Hin1II	CATG	4 cut(s)	68, 98, 183, 672
Hin6I	GCGC	1 cut(s)	268
HinP1I	GCGC	1 cut(s)	268
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HinfI	GANTC	5 cut(s)	41, 232, 237, 422, 784
HpaII	CCGG	1 cut(s)	222
HphI	GGTGA	2 cut(s)	370, 529
Hpy166II	GTNNAC	4 cut(s)	313, 549, 632, 788
Hpy188I	TCNGA	3 cut(s)	246, 493, 598
Hpy188III	TCNNGA	3 cut(s)	21, 106, 481
Hpy8I	GTNNAC	4 cut(s)	313, 549, 632, 788
HpyAV	CCTTC	1 cut(s)	434
HpyCH4III	ACNGT	1 cut(s)	317
HpyCH4V	TGCA	9 cut(s)	84, 158, 228, 371, 381, 448, 510, 632, 743
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 164, 638
Hsp92II	CATG	4 cut(s)	68, 98, 183, 672
HspAI	GCGC	1 cut(s)	268
Kzo9I	GATC	3 cut(s)	259, 263, 483
LmnI	GCTCC	3 cut(s)	23, 140, 148
Lsp1109I	GCAGC	1 cut(s)	365
LweI	GCATC	2 cut(s)	215, 497
MaeI	CTAG	2 cut(s)	695, 798
MalI	GATC	3 cut(s)	261, 265, 485
MboI	GATC	3 cut(s)	259, 263, 483
MboII	GAAGA	1 cut(s)	614
MfeI	CAATTG	1 cut(s)	135
MhlI	GDGCHC	2 cut(s)	145, 634
MluCI	AATT	6 cut(s)	52, 100, 135, 151, 435, 476
MlyI	GAGTC	1 cut(s)	793
MmeI	TCCRAC	2 cut(s)	576, 694
MseI	TTAA	2 cut(s)	395, 612
MspI	CCGG	1 cut(s)	222
MunI	CAATTG	1 cut(s)	135
Mva1269I	GAATGC	4 cut(s)	367, 450, 510, 756
MvnI	CGCG	1 cut(s)	268
MwoI	GCNNNNNNNGC	3 cut(s)	23, 164, 638
NdeII	GATC	3 cut(s)	259, 263, 483
NlaIII	CATG	4 cut(s)	68, 98, 183, 672
NlaIV	GGNNCC	3 cut(s)	328, 463, 729
NmeAIII	GCCGAG	1 cut(s)	748
PctI	GAATGC	4 cut(s)	367, 450, 510, 756
PfeI	GAWTC	4 cut(s)	41, 232, 237, 422
PkrI	GCNGC	1 cut(s)	380
Ple19I	CGATCG	2 cut(s)	262, 266
PleI	GAGTC	1 cut(s)	792
PpsI	GAGTC	1 cut(s)	792
Psp124BI	GAGCTC	1 cut(s)	145
PspFI	CCCAGC	1 cut(s)	353
PspN4I	GGNNCC	3 cut(s)	328, 463, 729
PstNI	CAGNNNCTG	1 cut(s)	44
PvuI	CGATCG	2 cut(s)	262, 266
RsaI	GTAC	3 cut(s)	127, 299, 550
RsaNI	GTAC	3 cut(s)	126, 298, 549
SacI	GAGCTC	1 cut(s)	145
SalI	GTCGAC	1 cut(s)	311
SaqAI	TTAA	2 cut(s)	395, 612
SatI	GCNGC	1 cut(s)	379
Sau3AI	GATC	3 cut(s)	259, 263, 483
SchI	GAGTC	1 cut(s)	793
SduI	GDGCHC	2 cut(s)	145, 634
SetI	ASST	9 cut(s)	28, 145, 201, 328, 336, 455, 501, 589, 780
SfaNI	GCATC	2 cut(s)	215, 497
SmlI	CTYRAG	1 cut(s)	773
SmoI	CTYRAG	1 cut(s)	773
Sse9I	AATT	6 cut(s)	52, 100, 135, 151, 435, 476
SsiI	CCGC	1 cut(s)	295
SspMI	CTAG	2 cut(s)	695, 798
SstI	GAGCTC	1 cut(s)	145
TaaI	ACNGT	1 cut(s)	317
TaqI	TCGA	5 cut(s)	235, 258, 262, 312, 748
TasI	AATT	6 cut(s)	52, 100, 135, 151, 435, 476
TatI	WGTACW	1 cut(s)	125
TfiI	GAWTC	4 cut(s)	41, 232, 237, 422
Tru1I	TTAA	2 cut(s)	395, 612
Tru9I	TTAA	2 cut(s)	395, 612
TscAI	CASTG	5 cut(s)	355, 378, 597, 714, 797
TseI	GCWGC	1 cut(s)	378
TspDTI	ATGAA	3 cut(s)	334, 431, 523
TspRI	CASTG	5 cut(s)	355, 378, 597, 714, 797
VneI	GTGCAC	1 cut(s)	630
XapI	RAATTY	2 cut(s)	100, 476
XmiI	GTMKAC	1 cut(s)	312
XspI	CTAG	2 cut(s)	695, 798

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.