Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009340

Physical Location & Seq

Genomic Coordinates Forward (+)

1773846 .. 1776781

Gene Structure 2936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G022000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGCTGATGGTGTATGCTGTAGGAGCTATTACATGCTTAGACTCTAATATACAACTGCATGAGGCATTGCCCTGCAAGACTACCCATGTGAATTTCTTGAACAAAATTTCAATTTGTCTTAGCTCAAGTGGAGCTCCTTGTAATTCTATACTCTCTGCCTCCTGCTTTTCTTGGAGAAACCGTGTTCAGCTAAACAGCCCCAAGAAATGGCTTTGCAGGATGCATGATTCGAGTTCATCAGATGATGATGAGTATCGATCCTCACGCAACATAGCAATCAGTTTGTTTAGGCGGTACAGGAATGTGGTTGACCGTGGAGGAGGTGCCAACCTAAAAGAGTTCATCAGTGCTGGGGTGAATGCATATGCGCTGGGGTGCACAGATGAGGGGTTAAGGAAAGAACTTGTTGATATGAAAGAATCTGGTGTTGAAATTGAAGGAATGCAAAGCTATGGTGGAACCACCAGTTTGAAATCCAAGATTGCATCAGAGGAGGTTGAGGAGTGCATTCTGTGGTTGAGCATTATATTCATCACCATCCTCTGTACACCACAGCCAACAATAGTTAGGTGGTCATCCACACCTCCAGTGTCAGATGAAGAAAGGCTTAAGTGGAAAGGTTTTTGTGCACTCATAGCAAATGCGTATTACGTGAGAGGAATGGCATGGCTTCCGGTAAAGACGCTTCAACTAGAGCAAATGGCAGTGGTTGGACATGCTGAGGAACCTTCAGTTGTTGCAAGTCGAATGCGATTAGTTTTTAGCACACTTGAGGTTGTGAGTCCACAGTGGCCTAGAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

268

Amino Acids

29.72

Weight (kDa)

7.51

Isoelectric Point (pI)

61.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009340)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62250 AT1G62250 AT1G62250
fragaria_vesca	FvH4_3g43300 FvH4_3g43300
malus_domestica	MD11G1027900.v1.1
prunus_persica	Prupe.6G022000_v2.0.a1 Prupe.6G022000_v2.0.a1 Prupe.6G022000_v2.0.a1 Prupe.6G022000_v2.0.a1
pyrus_communis	pycom03g01960 pycom11g02150
rosa_chinensis	RchiOBHm_Chr5g0077361
rosa_laevigata	RLG00000036691
rosa_multiflora	Rmu_co8301417.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004540
rosa_rugosa	Rorug05G0454500
rosa_samantha	Rh5AG509400 Rh5BG530900 Rh5CG555200 Rh5DG543100
rosa_wichuraiana	Rw5G046810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	323
AccB7I	CCANNNNNTGG	1 cut(s)	207
AciI	CCGC	1 cut(s)	292
AclWI	GGATC	1 cut(s)	252
AcsI	RAATTY	2 cut(s)	91, 105
AcuI	CTGAAG	1 cut(s)	714
AfaI	GTAC	2 cut(s)	296, 547
AfiI	CCNNNNNNNGG	1 cut(s)	207
AflII	CTTAAG	1 cut(s)	608
AgsI	TTSAA	6 cut(s)	100, 111, 431, 437, 472, 689
AluBI	AGCT	5 cut(s)	26, 123, 134, 190, 450
AluI	AGCT	5 cut(s)	26, 123, 134, 190, 450
Alw21I	GWGCWC	3 cut(s)	136, 380, 631
Alw44I	GTGCAC	2 cut(s)	376, 627
AlwI	GGATC	1 cut(s)	252
AoxI	GGCC	1 cut(s)	791
ApaLI	GTGCAC	2 cut(s)	376, 627
ApoI	RAATTY	2 cut(s)	91, 105
AspLEI	GCGC	1 cut(s)	370
AsuHPI	GGTGA	2 cut(s)	367, 526
BaeGI	GKGCMC	2 cut(s)	380, 631
BanI	GGYRCC	1 cut(s)	323
BanII	GRGCYC	1 cut(s)	136
BarI	GAAGNNNNNNTAC	2 cut(s)	669, 701
Bbv12I	GWGCWC	3 cut(s)	136, 380, 631
BbvCI	CCTCAGC	1 cut(s)	720
BccI	CCATC	1 cut(s)	545
BfaI	CTAG	2 cut(s)	692, 795
BfmI	CTRYAG	1 cut(s)	18
BfrI	CTTAAG	1 cut(s)	608
BmiI	GGNNCC	3 cut(s)	325, 460, 726
BmsI	GCATC	2 cut(s)	210, 494
BpmI	CTGGAG	1 cut(s)	570
Bpu10I	CCTNAGC	1 cut(s)	720
BpuEI	CTTGAG	2 cut(s)	109, 791
Bsa29I	ATCGAT	1 cut(s)	256
BsaAI	YACGTR	1 cut(s)	652
BsaBI	GATNNNNATC	1 cut(s)	252
BsaJI	CCNNGG	1 cut(s)	313
BsaWI	WCCGGW	1 cut(s)	673
BsaXI	ACNNNNNCTCC	2 cut(s)	166, 196
Bsc4I	CCNNNNNNNGG	1 cut(s)	207
Bse1I	ACTGG	2 cut(s)	465, 587
Bse3DI	GCAATG	1 cut(s)	65
Bse8I	GATNNNNATC	1 cut(s)	252
BseCI	ATCGAT	1 cut(s)	256
BseDI	CCNNGG	1 cut(s)	313
BseGI	GGATG	3 cut(s)	225, 537, 575
BseJI	GATNNNNATC	1 cut(s)	252
BseLI	CCNNNNNNNGG	1 cut(s)	207
BseMI	GCAATG	1 cut(s)	65
BseMII	CTCAG	1 cut(s)	711
BseNI	ACTGG	2 cut(s)	465, 587
BseRI	GAGGAG	3 cut(s)	333, 506, 515
BseSI	GKGCMC	2 cut(s)	380, 631
BseYI	CCCAGC	2 cut(s)	350, 370
BshFI	GGCC	1 cut(s)	793
BshNI	GGYRCC	1 cut(s)	323
BshVI	ATCGAT	1 cut(s)	256
BsiHKAI	GWGCWC	3 cut(s)	136, 380, 631
BsiSI	CCGG	1 cut(s)	674
BslI	CCNNNNNNNGG	1 cut(s)	207
BsmI	GAATGC	4 cut(s)	364, 447, 507, 753
BsnI	GGCC	1 cut(s)	793
Bsp1286I	GDGCHC	3 cut(s)	136, 380, 631
Bsp1407I	TGTACA	1 cut(s)	545
Bsp143I	GATC	1 cut(s)	257
BspACI	CCGC	1 cut(s)	292
BspANI	GGCC	1 cut(s)	793
BspCNI	CTCAG	1 cut(s)	712
BspDI	ATCGAT	1 cut(s)	256
BspLI	GGNNCC	3 cut(s)	325, 460, 726
BspPI	GGATC	1 cut(s)	252
BspT107I	GGYRCC	1 cut(s)	323
BspTI	CTTAAG	1 cut(s)	608
BsrDI	GCAATG	1 cut(s)	65
BsrGI	TGTACA	1 cut(s)	545
BsrI	ACTGG	2 cut(s)	465, 587
BssECI	CCNNGG	1 cut(s)	313
BssMI	GATC	1 cut(s)	257
Bst4CI	ACNGT	3 cut(s)	182, 314, 789
BstAFI	CTTAAG	1 cut(s)	608
BstAUI	TGTACA	1 cut(s)	545
BstBAI	YACGTR	1 cut(s)	652
BstDEI	CTNAG	3 cut(s)	37, 119, 720
BstDSI	CCRYGG	1 cut(s)	313
BstF5I	GGATG	3 cut(s)	225, 537, 575
BstHHI	GCGC	1 cut(s)	370
BstKTI	GATC	1 cut(s)	260
BstMBI	GATC	1 cut(s)	257
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 635
BstNSI	RCATGY	2 cut(s)	36, 719
BstSFI	CTRYAG	1 cut(s)	18
BstSLI	GKGCMC	2 cut(s)	380, 631
Bsu15I	ATCGAT	1 cut(s)	256
BsuRI	GGCC	1 cut(s)	793
BsuTUI	ATCGAT	1 cut(s)	256
BtgI	CCRYGG	1 cut(s)	313
BtsCI	GGATG	3 cut(s)	225, 537, 575
BtsI	GCAGTG	1 cut(s)	711
BtsIMutI	CAGTG	4 cut(s)	352, 594, 711, 794
CfoI	GCGC	1 cut(s)	370
ClaI	ATCGAT	1 cut(s)	256
CseI	GACGC	1 cut(s)	691
Csp6I	GTAC	2 cut(s)	295, 546
CviAII	CATG	6 cut(s)	33, 59, 86, 224, 666, 716
CviQI	GTAC	2 cut(s)	295, 546
DdeI	CTNAG	3 cut(s)	37, 119, 720
DpnI	GATC	1 cut(s)	259
DpnII	GATC	1 cut(s)	257
Ecl136II	GAGCTC	1 cut(s)	134
Eco24I	GRGCYC	1 cut(s)	136
Eco53kI	GAGCTC	1 cut(s)	134
Eco57I	CTGAAG	1 cut(s)	714
EcoICRI	GAGCTC	1 cut(s)	134
EcoT22I	ATGCAT	2 cut(s)	225, 364
EcoT38I	GRGCYC	1 cut(s)	136
FaeI	CATG	6 cut(s)	36, 62, 89, 227, 669, 719
FalI	AAGNNNNNCTT	2 cut(s)	591, 623
FatI	CATG	6 cut(s)	32, 58, 85, 223, 665, 715
FauNDI	CATATG	1 cut(s)	364
FokI	GGATG	3 cut(s)	232, 524, 562
FriOI	GRGCYC	1 cut(s)	136
FspBI	CTAG	2 cut(s)	692, 795
GlaI	GCGC	1 cut(s)	369
GsaI	CCCAGC	2 cut(s)	354, 374
GsuI	CTGGAG	1 cut(s)	570
HaeIII	GGCC	1 cut(s)	793
HapII	CCGG	1 cut(s)	674
HgaI	GACGC	1 cut(s)	691
HhaI	GCGC	1 cut(s)	370
Hin1II	CATG	6 cut(s)	36, 62, 89, 227, 669, 719
Hin6I	GCGC	1 cut(s)	368
HinP1I	GCGC	1 cut(s)	368
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HinfI	GANTC	4 cut(s)	41, 227, 419, 781
HpaII	CCGG	1 cut(s)	674
HphI	GGTGA	2 cut(s)	367, 526
Hpy166II	GTNNAC	5 cut(s)	310, 378, 548, 629, 785
Hpy188I	TCNGA	3 cut(s)	241, 490, 595
Hpy188III	TCNNGA	1 cut(s)	97
Hpy8I	GTNNAC	5 cut(s)	310, 378, 548, 629, 785
HpyAV	CCTTC	2 cut(s)	431, 738
HpyCH4III	ACNGT	3 cut(s)	182, 314, 789
HpyCH4IV	ACGT	1 cut(s)	651
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 635
HpyF3I	CTNAG	3 cut(s)	37, 119, 720
HpySE526I	ACGT	1 cut(s)	651
Hsp92II	CATG	6 cut(s)	36, 62, 89, 227, 669, 719
HspAI	GCGC	1 cut(s)	368
Kzo9I	GATC	1 cut(s)	257
LmnI	GCTCC	3 cut(s)	23, 131, 139
LweI	GCATC	2 cut(s)	210, 494
MaeI	CTAG	2 cut(s)	692, 795
MaeII	ACGT	1 cut(s)	651
MalI	GATC	1 cut(s)	259
MboI	GATC	1 cut(s)	257
MboII	GAAGA	1 cut(s)	611
MhlI	GDGCHC	3 cut(s)	136, 380, 631
MluCI	AATT	5 cut(s)	91, 105, 111, 142, 432
MlyI	GAGTC	2 cut(s)	35, 790
MmeI	TCCRAC	1 cut(s)	691
Mph1103I	ATGCAT	2 cut(s)	225, 364
MseI	TTAA	2 cut(s)	392, 609
MspCI	CTTAAG	1 cut(s)	608
MspI	CCGG	1 cut(s)	674
Mva1269I	GAATGC	4 cut(s)	364, 447, 507, 753
MwoI	GCNNNNNNNGC	2 cut(s)	23, 635
NdeI	CATATG	1 cut(s)	364
NdeII	GATC	1 cut(s)	257
NlaIII	CATG	6 cut(s)	36, 62, 89, 227, 669, 719
NlaIV	GGNNCC	3 cut(s)	325, 460, 726
NsiI	ATGCAT	2 cut(s)	225, 364
NspI	RCATGY	2 cut(s)	36, 719
PctI	GAATGC	4 cut(s)	364, 447, 507, 753
PfeI	GAWTC	2 cut(s)	227, 419
PflMI	CCANNNNNTGG	1 cut(s)	207
PleI	GAGTC	2 cut(s)	35, 789
PpsI	GAGTC	2 cut(s)	35, 789
Ppu21I	YACGTR	1 cut(s)	652
Psp124BI	GAGCTC	1 cut(s)	136
PspFI	CCCAGC	2 cut(s)	350, 370
PspN4I	GGNNCC	3 cut(s)	325, 460, 726
RsaI	GTAC	2 cut(s)	296, 547
RsaNI	GTAC	2 cut(s)	295, 546
SacI	GAGCTC	1 cut(s)	136
SaqAI	TTAA	2 cut(s)	392, 609
Sau3AI	GATC	1 cut(s)	257
SchI	GAGTC	2 cut(s)	35, 790
SduI	GDGCHC	3 cut(s)	136, 380, 631
SfaNI	GCATC	2 cut(s)	210, 494
SfcI	CTRYAG	1 cut(s)	18
SmlI	CTYRAG	3 cut(s)	124, 608, 770
SmoI	CTYRAG	3 cut(s)	124, 608, 770
Sse9I	AATT	5 cut(s)	91, 105, 111, 142, 432
SsiI	CCGC	1 cut(s)	292
SspMI	CTAG	2 cut(s)	692, 795
SstI	GAGCTC	1 cut(s)	136
TaaI	ACNGT	3 cut(s)	182, 314, 789
TaiI	ACGT	1 cut(s)	654
TaqI	TCGA	3 cut(s)	230, 256, 745
TasI	AATT	5 cut(s)	91, 105, 111, 142, 432
TatI	WGTACW	1 cut(s)	545
TfiI	GAWTC	2 cut(s)	227, 419
Tru1I	TTAA	2 cut(s)	392, 609
Tru9I	TTAA	2 cut(s)	392, 609
TscAI	CASTG	4 cut(s)	352, 594, 711, 794
TspDTI	ATGAA	5 cut(s)	225, 331, 428, 520, 612
TspRI	CASTG	4 cut(s)	352, 594, 711, 794
Van91I	CCANNNNNTGG	1 cut(s)	207
Vha464I	CTTAAG	1 cut(s)	608
VneI	GTGCAC	2 cut(s)	376, 627
XapI	RAATTY	2 cut(s)	91, 105
XceI	RCATGY	2 cut(s)	36, 719
XspI	CTAG	2 cut(s)	692, 795
Zsp2I	ATGCAT	2 cut(s)	225, 364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.