FvH4_3g45240

polyamine transporter At3g13620

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
37585701 .. 37587947
2247 bp
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UTR
Exon/CDS
Intron
FvH4_3g45240.t1

Sequence Viewer

Length: 1407 bp
ATGGAATCTCCTCCAAAGCCACCACCAGACCTCCCAATCACCACCACCACCACCACCACCACGCCCGCCACTCCAACCGCAAAGAAGCTCACTCTCATCCCTCTAATTTTCCTCATCTACTTCGAAGTCGCCGGCGGCCCTTACGGAGAAGAACCTGCCGTCCAAGCCGCCGGTCCCCTTCTCGCCATTCTCGGCTTCCTCATCTTCCCTTTCATCTGGAGTGTCCCTGAGGCTCTCATCACCGCTGAACTCTCCACCACCTTCCCCGGCAACGGCGGCTTTGTCATATGGGCCGACAGGGCCTTTGGGCCTTTCTGGGGATCCATTATGGGGACATGGAAGTTCCTCAGCGGCGTCATCAATATTGCAGCCTTCCCTGTTCTCTGCATTGATTACATGGAGAAGATATTCCCTGCTCTTGAGTCAGGCTGGCCTAGGTACCTCTCTGTCTGTCTTTCAACTCTGTTCCTAGCTTTTCTCAACTTTACTGGCTTGGCCATTGTGGGATATGCTGCTGTGGTTCTTGCTGCTGTTTCGCTTTCCCCTTTTATATTGATGTCTTTGATTGCCTTACCGAAGATTAAGCCACATAGGTGGTTGAGTTTGGGGCAGAAGGGTGTGAAGAAAGATTGGAACTTGTTCTTCAACACTCTATTTTGGAACTTGAACTTCTGGGATAATGTGAGTACTTTGGCAGGAGAAGTAGAAAAGCCTCAGAAGACTTTCCCCAAGGCTCTTTTTGTGGCTGTGATATTCACTTGCTTGGCGTATTTGTTCCCTCTTTTTGCTGTGATTGGAGCTGTGGATGTTGATCAGAACAGATGGGAATCAGGGTTTCATGCTGAGGCTGCTGAGATCATTGCAGGGAAGTGGTTGAAGTATTGGATTGAAGTTGGTGCTGTGTTGTCTGGGATTGGTCTTTTTGAAGCTCAACTAAGCAGTAGTGCTTACCAAGTTCTTGGTATGGCAGATATAGGATTCTTGCCTACGTTTTTTGGGGTTCGACACAAGAGGTTCGATACCCCATGGGTTGGGATTTTGATCTCCACCATGATCACACTTGGAGTTTCCTACATGAACTTTACGGATATAATTTCATCTGCAAATTTCTTGTATAGTTTGGGGATGTTATTGGAGTTTGCGTCTTTCATTTGGTTGAGGAGGAAGATGCCAACATTGAAGAGGCCTTTTCGAGTTCCCATGAAGCTGCCAGGTTTGGTGATCATGTGTTTGATTCCATCCGGGTTTTTGATTTTTGTGATGGCTATTGCTACCAAGACAGTGTATTTGGTTAGTGCTATAATGAGCGTGTGTGGAGTTGGGTGGTTCTTTTTAATGAAATATTGCAAGTCAAAGAAGTTGTTCAAGTTCAGTACTGATGAAATTGAAGATATTGAAGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

469

Amino Acids

51.96

Weight (kDa)

8.09

Isoelectric Point (pI)

40.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AA_permease_2 PF13520 33 - 425 2.8e-36 Amino acid permease
AA_permease PF00324 53 - 431 1e-16 Amino acid permease
Trp_Tyr_perm PF03222 66 - 271 6.4e-06 Tryptophan/tyrosine permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 163
Acc65I GGTACC 1 cut(s) 438
AccB1I GGYRCC 1 cut(s) 438
AccB7I CCANNNNNTGG 1 cut(s) 1031
AciI CCGC 7 cut(s) 66, 78, 135, 168, 243, 276, 351
AclWI GGATC 2 cut(s) 315, 328
AcoI YGGCCR 1 cut(s) 495
AcsI RAATTY 1 cut(s) 1105
AcyI GRCGYC 1 cut(s) 354
AfaI GTAC 3 cut(s) 440, 688, 1375
AfiI CCNNNNNNNGG 4 cut(s) 272, 317, 330, 1031
AjnI CCWGG 1 cut(s) 1210
AleI CACNNNNGTG 1 cut(s) 592
AloI GAACNNNNNNTCC 2 cut(s) 144, 176
AluBI AGCT 5 cut(s) 88, 473, 800, 929, 1207
AluI AGCT 5 cut(s) 88, 473, 800, 929, 1207
AlwI GGATC 2 cut(s) 315, 328
AoxI GGCC 7 cut(s) 136, 291, 300, 308, 431, 495, 1184
ApeKI GCWGC 5 cut(s) 368, 512, 527, 848, 1207
ApoI RAATTY 1 cut(s) 1105
ArsI GACNNNNNNTTYG 4 cut(s) 287, 319, 1270, 1302
Asp700I GAANNNNTTC 4 cut(s) 407, 638, 722, 1361
Asp718I GGTACC 1 cut(s) 438
AspA2I CCTAGG 1 cut(s) 434
AspS9I GGNCC 5 cut(s) 137, 173, 291, 300, 308
AsuC2I CCSGG 2 cut(s) 267, 1243
AsuHPI GGTGA 3 cut(s) 31, 232, 1231
AsuII TTCGAA 1 cut(s) 123
AvaII GGWCC 1 cut(s) 173
AvrII CCTAGG 1 cut(s) 434
AxyI CCTNAGG 1 cut(s) 228
BalI TGGCCA 1 cut(s) 497
BamHI GGATCC 1 cut(s) 320
BanI GGYRCC 1 cut(s) 438
BbsI GAAGAC 1 cut(s) 725
BbvCI CCTCAGC 2 cut(s) 347, 843
BbvI GCAGC 5 cut(s) 380, 499, 514, 835, 1194
BccI CCATC 3 cut(s) 816, 1246, 1255
BceAI ACGGC 2 cut(s) 143, 289
BciT130I CCWGG 1 cut(s) 1212
BclI TGATCA 3 cut(s) 811, 1053, 1221
BcnI CCSGG 2 cut(s) 267, 1243
BfaI CTAG 2 cut(s) 435, 470
BfuAI ACCTGC 1 cut(s) 163
BglI GCCNNNNNGGC 1 cut(s) 299
BisI GCNGC 9 cut(s) 136, 168, 277, 352, 369, 513, 528, 849, 1208
BlnI CCTAGG 1 cut(s) 434
BlsI GCNGC 9 cut(s) 137, 169, 278, 353, 370, 514, 529, 850, 1209
BmcAI AGTACT 2 cut(s) 688, 1375
Bme1390I CCNGG 3 cut(s) 267, 1212, 1243
Bme18I GGWCC 1 cut(s) 173
BmgT120I GGNCC 5 cut(s) 137, 173, 291, 300, 308
BmiI GGNNCC 3 cut(s) 175, 322, 440
BmrFI CCNGG 3 cut(s) 267, 1212, 1243
BmsI GCATC 1 cut(s) 1158
BpiI GAAGAC 1 cut(s) 725
BpmI CTGGAG 1 cut(s) 238
Bpu10I CCTNAGC 2 cut(s) 347, 843
Bpu14I TTCGAA 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 440
BpuMI CCSGG 2 cut(s) 267, 1243
BsaBI GATNNNNATC 3 cut(s) 810, 826, 1040
BsaHI GRCGYC 1 cut(s) 354
BsaJI CCNNGG 4 cut(s) 265, 434, 729, 1025
BsaXI ACNNNNNCTCC 4 cut(s) 15, 45, 1127, 1157
Bsc4I CCNNNNNNNGG 4 cut(s) 272, 317, 330, 1031
Bse118I RCCGGY 2 cut(s) 131, 170
Bse1I ACTGG 1 cut(s) 493
Bse21I CCTNAGG 1 cut(s) 228
Bse3DI GCAATG 1 cut(s) 858
Bse8I GATNNNNATC 3 cut(s) 810, 826, 1040
BseBI CCWGG 1 cut(s) 1212
BseDI CCNNGG 4 cut(s) 265, 434, 729, 1025
BseGI GGATG 4 cut(s) 96, 811, 1131, 1238
BseJI GATNNNNATC 3 cut(s) 810, 826, 1040
BseLI CCNNNNNNNGG 4 cut(s) 272, 317, 330, 1031
BseMI GCAATG 1 cut(s) 858
BseMII CTCAG 5 cut(s) 219, 361, 728, 834, 843
BseNI ACTGG 1 cut(s) 493
BseRI GAGGAG 1 cut(s) 1174
BseXI GCAGC 5 cut(s) 380, 499, 514, 835, 1194
BshFI GGCC 7 cut(s) 138, 293, 302, 310, 433, 497, 1186
BshNI GGYRCC 1 cut(s) 438
BsiSI CCGG 4 cut(s) 132, 171, 267, 1242
BslFI GGGAC 3 cut(s) 159, 209, 346
BslI CCNNNNNNNGG 4 cut(s) 272, 317, 330, 1031
BsmFI GGGAC 3 cut(s) 159, 209, 346
BsnI GGCC 7 cut(s) 138, 293, 302, 310, 433, 497, 1186
Bsp119I TTCGAA 1 cut(s) 123
Bsp143I GATC 6 cut(s) 320, 811, 855, 1041, 1053, 1221
Bsp19I CCATGG 1 cut(s) 1025
BspACI CCGC 7 cut(s) 66, 78, 135, 168, 243, 276, 351
BspANI GGCC 7 cut(s) 138, 293, 302, 310, 433, 497, 1186
BspCNI CTCAG 5 cut(s) 220, 360, 727, 835, 844
BspLI GGNNCC 3 cut(s) 175, 322, 440
BspMI ACCTGC 1 cut(s) 163
BspPI GGATC 2 cut(s) 315, 328
BspT104I TTCGAA 1 cut(s) 123
BspT107I GGYRCC 1 cut(s) 438
BsrDI GCAATG 1 cut(s) 858
BsrFI RCCGGY 2 cut(s) 131, 170
BsrI ACTGG 1 cut(s) 493
BssAI RCCGGY 2 cut(s) 131, 170
BssECI CCNNGG 4 cut(s) 265, 434, 729, 1025
BssMI GATC 6 cut(s) 320, 811, 855, 1041, 1053, 1221
BssNI GRCGYC 1 cut(s) 354
BssT1I CCWWGG 3 cut(s) 434, 729, 1025
Bst2UI CCWGG 1 cut(s) 1212
Bst4CI ACNGT 1 cut(s) 1282
Bst6I CTCTTC 1 cut(s) 1175
BstACI GRCGYC 1 cut(s) 354
BstBI TTCGAA 1 cut(s) 123
BstC8I GCNNGC 3 cut(s) 66, 133, 431
BstDEI CTNAG 6 cut(s) 228, 347, 714, 843, 852, 935
BstDSI CCRYGG 1 cut(s) 1025
BstF5I GGATG 4 cut(s) 96, 811, 1131, 1238
BstKTI GATC 6 cut(s) 323, 814, 858, 1044, 1056, 1224
BstMBI GATC 6 cut(s) 320, 811, 855, 1041, 1053, 1221
BstMWI GCNNNNNNNGC 4 cut(s) 164, 276, 299, 848
BstNI CCWGG 1 cut(s) 1212
BstSCI CCNGG 3 cut(s) 265, 1210, 1241
BstV1I GCAGC 5 cut(s) 380, 499, 514, 835, 1194
BstV2I GAAGAC 1 cut(s) 725
BstX2I RGATCY 1 cut(s) 320
BstXI CCANNNNNNTGG 2 cut(s) 594, 959
BstYI RGATCY 1 cut(s) 320
Bsu36I CCTNAGG 1 cut(s) 228
BsuRI GGCC 7 cut(s) 138, 293, 302, 310, 433, 497, 1186
BtgI CCRYGG 1 cut(s) 1025
BtsCI GGATG 4 cut(s) 96, 811, 1131, 1238
BtsIMutI CAGTG 1 cut(s) 1287
BveI ACCTGC 1 cut(s) 163
Cac8I GCNNGC 3 cut(s) 66, 133, 431
Cfr10I RCCGGY 2 cut(s) 131, 170
Cfr13I GGNCC 5 cut(s) 137, 173, 291, 300, 308
CseI GACGC 2 cut(s) 343, 1131
Csp6I GTAC 3 cut(s) 439, 687, 1374
CviAII CATG 8 cut(s) 336, 397, 839, 1026, 1051, 1075, 1201, 1225
CviQI GTAC 3 cut(s) 439, 687, 1374
DdeI CTNAG 6 cut(s) 228, 347, 714, 843, 852, 935
DpnI GATC 6 cut(s) 322, 813, 857, 1043, 1055, 1223
DpnII GATC 6 cut(s) 320, 811, 855, 1041, 1053, 1221
EaeI YGGCCR 1 cut(s) 495
Eam1104I CTCTTC 1 cut(s) 1175
EarI CTCTTC 1 cut(s) 1175
Eco130I CCWWGG 3 cut(s) 434, 729, 1025
Eco147I AGGCCT 1 cut(s) 1186
Eco47I GGWCC 1 cut(s) 173
Eco81I CCTNAGG 1 cut(s) 228
EcoO109I RGGNCCY 1 cut(s) 300
EcoRII CCWGG 1 cut(s) 1210
EcoT14I CCWWGG 3 cut(s) 434, 729, 1025
ErhI CCWWGG 3 cut(s) 434, 729, 1025
FaeI CATG 8 cut(s) 339, 400, 842, 1029, 1054, 1078, 1204, 1228
FaqI GGGAC 3 cut(s) 159, 209, 346
FatI CATG 8 cut(s) 335, 396, 838, 1025, 1050, 1074, 1200, 1224
FauI CCCGC 1 cut(s) 73
FauNDI CATATG 1 cut(s) 287
FbaI TGATCA 3 cut(s) 811, 1053, 1221
Fnu4HI GCNGC 9 cut(s) 136, 168, 277, 352, 369, 513, 528, 849, 1208
FokI GGATG 4 cut(s) 83, 818, 1138, 1225
Fsp4HI GCNGC 9 cut(s) 136, 168, 277, 352, 369, 513, 528, 849, 1208
FspBI CTAG 2 cut(s) 435, 470
GluI GCNGC 9 cut(s) 136, 168, 277, 352, 369, 513, 528, 849, 1208
GsuI CTGGAG 1 cut(s) 238
HaeIII GGCC 7 cut(s) 138, 293, 302, 310, 433, 497, 1186
HapII CCGG 4 cut(s) 132, 171, 267, 1242
HgaI GACGC 2 cut(s) 343, 1131
Hin1I GRCGYC 1 cut(s) 354
Hin1II CATG 8 cut(s) 339, 400, 842, 1029, 1054, 1078, 1204, 1228
HinfI GANTC 5 cut(s) 5, 422, 827, 978, 1234
HpaII CCGG 4 cut(s) 132, 171, 267, 1242
HphI GGTGA 3 cut(s) 31, 232, 1231
Hpy188I TCNGA 2 cut(s) 717, 816
Hpy188III TCNNGA 2 cut(s) 217, 419
HpyAV CCTTC 4 cut(s) 188, 271, 382, 607
HpyCH4III ACNGT 1 cut(s) 1282
HpyCH4IV ACGT 1 cut(s) 989
HpyCH4V TGCA 5 cut(s) 368, 387, 863, 1103, 1347
HpyF10VI GCNNNNNNNGC 4 cut(s) 164, 276, 299, 848
HpyF3I CTNAG 6 cut(s) 228, 347, 714, 843, 852, 935
HpySE526I ACGT 1 cut(s) 989
Hsp92I GRCGYC 1 cut(s) 354
Hsp92II CATG 8 cut(s) 339, 400, 842, 1029, 1054, 1078, 1204, 1228
KpnI GGTACC 1 cut(s) 442
KroI GCCGGC 1 cut(s) 131
KroNI GCCGGC 1 cut(s) 133
Ksp22I TGATCA 3 cut(s) 811, 1053, 1221
Kzo9I GATC 6 cut(s) 320, 811, 855, 1041, 1053, 1221
LmnI GCTCC 1 cut(s) 797
Lsp1109I GCAGC 5 cut(s) 380, 499, 514, 835, 1194
LweI GCATC 1 cut(s) 1158
MaeI CTAG 2 cut(s) 435, 470
MaeII ACGT 1 cut(s) 989
MalI GATC 6 cut(s) 322, 813, 857, 1043, 1055, 1223
MboI GATC 6 cut(s) 320, 811, 855, 1041, 1053, 1221
MflI RGATCY 1 cut(s) 320
MlsI TGGCCA 1 cut(s) 497
MluCI AATT 4 cut(s) 105, 1092, 1105, 1383
MluNI TGGCCA 1 cut(s) 497
MlyI GAGTC 1 cut(s) 431
MmeI TCCRAC 1 cut(s) 98
Mox20I TGGCCA 1 cut(s) 497
MreI CGCCGGCG 1 cut(s) 131
MroNI GCCGGC 1 cut(s) 131
MroXI GAANNNNTTC 4 cut(s) 407, 638, 722, 1361
MscI TGGCCA 1 cut(s) 497
MseI TTAA 2 cut(s) 582, 1334
MslI CAYNNNNRTG 1 cut(s) 592
Msp20I TGGCCA 1 cut(s) 497
MspA1I CMGCKG 2 cut(s) 245, 351
MspI CCGG 4 cut(s) 132, 171, 267, 1242
MspR9I CCNGG 3 cut(s) 267, 1212, 1243
MvaI CCWGG 1 cut(s) 1212
MwoI GCNNNNNNNGC 4 cut(s) 164, 276, 299, 848
NaeI GCCGGC 1 cut(s) 133
NciI CCSGG 2 cut(s) 267, 1243
NcoI CCATGG 1 cut(s) 1025
NdeI CATATG 1 cut(s) 287
NdeII GATC 6 cut(s) 320, 811, 855, 1041, 1053, 1221
NgoMIV GCCGGC 1 cut(s) 131
NlaIII CATG 8 cut(s) 339, 400, 842, 1029, 1054, 1078, 1204, 1228
NlaIV GGNNCC 3 cut(s) 175, 322, 440
NmeAIII GCCGAG 1 cut(s) 171
NspV TTCGAA 1 cut(s) 123
OliI CACNNNNGTG 1 cut(s) 592
PceI AGGCCT 1 cut(s) 1186
PdiI GCCGGC 1 cut(s) 133
PdmI GAANNNNTTC 4 cut(s) 407, 638, 722, 1361
PfeI GAWTC 4 cut(s) 5, 827, 978, 1234
PflMI CCANNNNNTGG 1 cut(s) 1031
PkrI GCNGC 9 cut(s) 137, 169, 278, 353, 370, 514, 529, 850, 1209
PleI GAGTC 1 cut(s) 430
PpsI GAGTC 1 cut(s) 430
Psp6I CCWGG 1 cut(s) 1210
PspGI CCWGG 1 cut(s) 1210
PspN4I GGNNCC 3 cut(s) 175, 322, 440
PspPI GGNCC 5 cut(s) 137, 173, 291, 300, 308
PsuI RGATCY 1 cut(s) 320
RsaI GTAC 3 cut(s) 440, 688, 1375
RsaNI GTAC 3 cut(s) 439, 687, 1374
RseI CAYNNNNRTG 1 cut(s) 592
SaqAI TTAA 2 cut(s) 582, 1334
SatI GCNGC 9 cut(s) 136, 168, 277, 352, 369, 513, 528, 849, 1208
Sau3AI GATC 6 cut(s) 320, 811, 855, 1041, 1053, 1221
Sau96I GGNCC 5 cut(s) 137, 173, 291, 300, 308
ScaI AGTACT 2 cut(s) 688, 1375
SchI GAGTC 1 cut(s) 431
ScrFI CCNGG 3 cut(s) 267, 1212, 1243
SfaNI GCATC 1 cut(s) 1158
SfiI GGCCNNNNNGGCC 1 cut(s) 299
SfuI TTCGAA 1 cut(s) 123
SgrAI CRCCGGYG 1 cut(s) 131
SinI GGWCC 1 cut(s) 173
SmiMI CAYNNNNRTG 1 cut(s) 592
SmlI CTYRAG 1 cut(s) 419
SmoI CTYRAG 1 cut(s) 419
Sse9I AATT 4 cut(s) 105, 1092, 1105, 1383
SseBI AGGCCT 1 cut(s) 1186
SsiI CCGC 7 cut(s) 66, 78, 135, 168, 243, 276, 351
SspI AATATT 2 cut(s) 364, 1343
SspMI CTAG 2 cut(s) 435, 470
StuI AGGCCT 1 cut(s) 1186
StyD4I CCNGG 3 cut(s) 265, 1210, 1241
StyI CCWWGG 3 cut(s) 434, 729, 1025
TaaI ACNGT 1 cut(s) 1282
TaiI ACGT 1 cut(s) 992
TaqI TCGA 4 cut(s) 123, 1003, 1017, 1192
TasI AATT 4 cut(s) 105, 1092, 1105, 1383
TatI WGTACW 2 cut(s) 686, 1373
TauI GCSGC 4 cut(s) 138, 170, 279, 354
TfiI GAWTC 4 cut(s) 5, 827, 978, 1234
Tru1I TTAA 2 cut(s) 582, 1334
Tru9I TTAA 2 cut(s) 582, 1334
TscAI CASTG 1 cut(s) 1287
TseI GCWGC 5 cut(s) 368, 512, 527, 848, 1207
TspDTI ATGAA 8 cut(s) 202, 827, 1086, 1091, 1138, 1217, 1352, 1395
TspGWI ACGGA 2 cut(s) 159, 1100
TspRI CASTG 1 cut(s) 1287
Van91I CCANNNNNTGG 1 cut(s) 1031
VpaK11BI GGWCC 1 cut(s) 173
XapI RAATTY 1 cut(s) 1105
XmaJI CCTAGG 1 cut(s) 434
XmnI GAANNNNTTC 4 cut(s) 407, 638, 722, 1361
XspI CTAG 2 cut(s) 435, 470
ZrmI AGTACT 2 cut(s) 688, 1375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.