Rh5BG557700

polyamine transporter At3g13620

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
88739195 .. 88741156
1962 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG557700.1

Sequence Viewer

Length: 1404 bp
ATGGAATCTCCTCCACAACCACTTCCAGACCTCCCGATCACCACCACCACAACCACCACGCCCACCACTCCAAACCCAAAGAAGCTCACTCTCATCCCTCTCATTTTCCTCATCTACTTCGAAGTCGCCGGCGGCCCGTATGGCGAAGAGCCAGCAGTTCAAGCCGCCGGCCCCCTTCTCGCCATTCTCGGCTTCCTCATCTTCCCTTTCATCTGGAGTGTCCCCGAGGCTCTCATCACCGCCGAGCTCTCCACCACCTTCCCCGGCAACGGCGGCTTTGTCATCTGGGCCGACCGGGCTTTCGGGCCTTTCTGGGGATCACTAATGGGCACCTGGAAGTTCCTCAGCGGCGTCATCAACATTGCTGCATTCCCAGTTCTATGTATAGATTACATGGAGAAGGTAATCCCTGCTCTTGAATCAGGGTGGCCTAGGTACCTTGCTGTGGGTGTTTCAACTCTGTTTCTTTCGTTTCTCAACTTTACAGGCTTAGCTATTGTGGGATATGTTGCTGTGGTTCTTGGTCTTGTTTCGCTTTCGCCTTTTATAGTCATGTCTTTGATCGCCATACCGAAGATTAAACCCCATAGGTGGTTGAGTTTGGGGCAGAAGGGTGTGAAGAAAGATTGGAACTTGTTCTTCAACACCCTGTTTTGGAACTTGAACTTTTGGGATAATGTTAGTACTTTGGCAGGAGAAGTAGAAAAGCCTCGGAAAACTTTTCCCAAGGCTCTTTTTGCGGCTGTCATATTCACTTGCATGGCTTATTTGGTCCCTCTTTTCGCTGTCATTGGATCGGTCAATGTGGATCAGAGGAAATGGGAATCCGGGTTTCATGCTGAGGCTGCTGAAATCATTGCTGGCAAGTGGTTGAAGTATTGGATTGAAGTTGGTGCTGTGTTGTCTGGTATTGGTCTTTTTGAAGCTCAACTAAGCAGCAGTGCTTACCAAGTTCTTGGTATGGCAGACATAGGATTCTTGCCTAGGTTTTTCGCGGTTCGATCCAAGAGGTTTGATACCCCATGGGTTGGAATTTTGATTTCCACACTGATCACTCTTGGAGTTTCCTACATGAATTTTACAGATATAATTTCATCTGCAAATTTCTTGTATAGTTTGGGAATGTTATTGGAGTTTGCGTCTTTCATTTGGTTGAGGAGGAAGATGCCAACATTGAAGAGGCCTTATCGAGTTCCGATGAAGCTGCCAGGTTTGGTGATCATGTGTTTGATTCCATCTGGGTTTTTGATTTTTGTGATGGCTATTGCTACCAAGACGGTGTATTTGGTTAGTGCTATAATGAGCGTGGCTGGAATTGGATGGTTCTTTTTGATGAAATATTGCAAGGCAAAGAAGTTGTTCAAGTTCAGTGCTATTGAAATTGAAGATATTGAAGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

467

Amino Acids

51.83

Weight (kDa)

8.95

Isoelectric Point (pI)

36.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AA_permease_2 PF13520 32 - 425 2.4e-36 Amino acid permease
AA_permease PF00324 52 - 430 1.7e-17 Amino acid permease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 435
AccB1I GGYRCC 2 cut(s) 329, 435
AccB7I CCANNNNNTGG 1 cut(s) 1028
AccII CGCG 1 cut(s) 995
AciI CCGC 7 cut(s) 132, 165, 240, 273, 348, 740, 995
AclWI GGATC 4 cut(s) 325, 802, 816, 996
AcsI RAATTY 3 cut(s) 1032, 1075, 1102
AcyI GRCGYC 1 cut(s) 351
AfaI GTAC 2 cut(s) 437, 685
AfiI CCNNNNNNNGG 6 cut(s) 269, 314, 445, 591, 654, 1028
AjnI CCWGG 2 cut(s) 332, 1207
AluBI AGCT 5 cut(s) 85, 247, 494, 926, 1204
AluI AGCT 5 cut(s) 85, 247, 494, 926, 1204
Alw21I GWGCWC 1 cut(s) 249
AlwI GGATC 4 cut(s) 325, 802, 816, 996
Ama87I CYCGRG 1 cut(s) 224
AoxI GGCC 6 cut(s) 133, 169, 288, 305, 428, 1181
ApeKI GCWGC 4 cut(s) 365, 845, 936, 1204
ApoI RAATTY 3 cut(s) 1032, 1075, 1102
ArsI GACNNNNNNTTYG 4 cut(s) 284, 316, 1267, 1299
Asp700I GAANNNNTTC 2 cut(s) 635, 1358
Asp718I GGTACC 1 cut(s) 435
AspA2I CCTAGG 2 cut(s) 431, 983
AspS9I GGNCC 5 cut(s) 134, 170, 288, 305, 772
AsuC2I CCSGG 3 cut(s) 264, 296, 829
AsuHPI GGTGA 3 cut(s) 31, 229, 1228
AsuII TTCGAA 1 cut(s) 120
AvaI CYCGRG 1 cut(s) 224
AvaII GGWCC 1 cut(s) 772
AvrII CCTAGG 2 cut(s) 431, 983
BaeGI GKGCMC 1 cut(s) 332
BanI GGYRCC 2 cut(s) 329, 435
BanII GRGCYC 1 cut(s) 249
Bbv12I GWGCWC 1 cut(s) 249
BbvCI CCTCAGC 2 cut(s) 344, 840
BbvI GCAGC 4 cut(s) 352, 832, 948, 1191
BccI CCATC 3 cut(s) 1243, 1252, 1314
BceAI ACGGC 1 cut(s) 286
BcgI CGANNNNNNTGC 2 cut(s) 1186, 1220
BciT130I CCWGG 2 cut(s) 334, 1209
BclI TGATCA 2 cut(s) 1050, 1218
BcnI CCSGG 3 cut(s) 264, 296, 829
BfaI CTAG 2 cut(s) 432, 984
BglI GCCNNNNNGGC 2 cut(s) 141, 296
BisI GCNGC 9 cut(s) 133, 165, 274, 349, 366, 741, 846, 937, 1205
BlnI CCTAGG 2 cut(s) 431, 983
BlpI GCTNAGC 1 cut(s) 490
BlsI GCNGC 9 cut(s) 134, 166, 275, 350, 367, 742, 847, 938, 1206
BmcAI AGTACT 1 cut(s) 685
Bme1390I CCNGG 5 cut(s) 264, 296, 334, 829, 1209
Bme18I GGWCC 1 cut(s) 772
BmeT110I CYCGRG 1 cut(s) 224
BmgT120I GGNCC 5 cut(s) 134, 170, 288, 305, 772
BmiI GGNNCC 4 cut(s) 172, 331, 437, 774
BmrFI CCNGG 5 cut(s) 264, 296, 334, 829, 1209
BmrI ACTGGG 1 cut(s) 368
BmsI GCATC 1 cut(s) 1155
BmuI ACTGGG 1 cut(s) 368
BpmI CTGGAG 1 cut(s) 235
Bpu10I CCTNAGC 2 cut(s) 344, 840
Bpu1102I GCTNAGC 1 cut(s) 490
Bpu14I TTCGAA 1 cut(s) 120
BpuMI CCSGG 3 cut(s) 264, 296, 829
BsaHI GRCGYC 1 cut(s) 351
BsaJI CCNNGG 7 cut(s) 225, 262, 431, 710, 726, 983, 1022
BsaXI ACNNNNNCTCC 2 cut(s) 1124, 1154
Bsc4I CCNNNNNNNGG 6 cut(s) 269, 314, 445, 591, 654, 1028
Bse118I RCCGGY 2 cut(s) 128, 167
Bse1I ACTGG 1 cut(s) 374
Bse3DI GCAATG 2 cut(s) 360, 855
BseBI CCWGG 2 cut(s) 334, 1209
BseDI CCNNGG 7 cut(s) 225, 262, 431, 710, 726, 983, 1022
BseGI GGATG 2 cut(s) 93, 1325
BseLI CCNNNNNNNGG 6 cut(s) 269, 314, 445, 591, 654, 1028
BseMI GCAATG 2 cut(s) 360, 855
BseMII CTCAG 2 cut(s) 358, 831
BseNI ACTGG 1 cut(s) 374
BseRI GAGGAG 1 cut(s) 1171
BseSI GKGCMC 1 cut(s) 332
BseXI GCAGC 4 cut(s) 352, 832, 948, 1191
Bsh1236I CGCG 1 cut(s) 995
Bsh1285I CGRYCG 1 cut(s) 295
BshFI GGCC 6 cut(s) 135, 171, 290, 307, 430, 1183
BshNI GGYRCC 2 cut(s) 329, 435
BsiEI CGRYCG 1 cut(s) 295
BsiHKAI GWGCWC 1 cut(s) 249
BsiHKCI CYCGRG 1 cut(s) 224
BsiSI CCGG 5 cut(s) 129, 168, 264, 295, 828
BslFI GGGAC 2 cut(s) 206, 758
BslI CCNNNNNNNGG 6 cut(s) 269, 314, 445, 591, 654, 1028
BsmFI GGGAC 2 cut(s) 206, 758
BsmI GAATGC 1 cut(s) 368
BsnI GGCC 6 cut(s) 135, 171, 290, 307, 430, 1183
BsoBI CYCGRG 1 cut(s) 224
Bsp119I TTCGAA 1 cut(s) 120
Bsp1286I GDGCHC 2 cut(s) 249, 332
Bsp143I GATC 8 cut(s) 36, 317, 561, 794, 808, 1001, 1050, 1218
Bsp1720I GCTNAGC 1 cut(s) 490
Bsp19I CCATGG 1 cut(s) 1022
BspACI CCGC 7 cut(s) 132, 165, 240, 273, 348, 740, 995
BspANI GGCC 6 cut(s) 135, 171, 290, 307, 430, 1183
BspCNI CTCAG 2 cut(s) 357, 832
BspFNI CGCG 1 cut(s) 995
BspLI GGNNCC 4 cut(s) 172, 331, 437, 774
BspPI GGATC 4 cut(s) 325, 802, 816, 996
BspQI GCTCTTC 1 cut(s) 141
BspT104I TTCGAA 1 cut(s) 120
BspT107I GGYRCC 2 cut(s) 329, 435
BsrDI GCAATG 2 cut(s) 360, 855
BsrFI RCCGGY 2 cut(s) 128, 167
BsrI ACTGG 1 cut(s) 374
BssAI RCCGGY 2 cut(s) 128, 167
BssECI CCNNGG 7 cut(s) 225, 262, 431, 710, 726, 983, 1022
BssMI GATC 8 cut(s) 36, 317, 561, 794, 808, 1001, 1050, 1218
BssNI GRCGYC 1 cut(s) 351
BssT1I CCWWGG 4 cut(s) 431, 726, 983, 1022
Bst2UI CCWGG 2 cut(s) 334, 1209
Bst4CI ACNGT 1 cut(s) 1279
Bst6I CTCTTC 2 cut(s) 141, 1172
BstACI GRCGYC 1 cut(s) 351
BstBI TTCGAA 1 cut(s) 120
BstC8I GCNNGC 4 cut(s) 130, 153, 169, 862
BstDEI CTNAG 4 cut(s) 344, 490, 840, 932
BstDSI CCRYGG 1 cut(s) 1022
BstF5I GGATG 2 cut(s) 93, 1325
BstFNI CGCG 1 cut(s) 995
BstKTI GATC 8 cut(s) 39, 320, 564, 797, 811, 1004, 1053, 1221
BstMBI GATC 8 cut(s) 36, 317, 561, 794, 808, 1001, 1050, 1218
BstMCI CGRYCG 1 cut(s) 295
BstMWI GCNNNNNNNGC 6 cut(s) 141, 161, 273, 296, 737, 845
BstNI CCWGG 2 cut(s) 334, 1209
BstSCI CCNGG 5 cut(s) 262, 294, 332, 827, 1207
BstSLI GKGCMC 1 cut(s) 332
BstUI CGCG 1 cut(s) 995
BstV1I GCAGC 4 cut(s) 352, 832, 948, 1191
BstXI CCANNNNNNTGG 1 cut(s) 956
BsuRI GGCC 6 cut(s) 135, 171, 290, 307, 430, 1183
BtgI CCRYGG 1 cut(s) 1022
BtsCI GGATG 2 cut(s) 93, 1325
BtsI GCAGTG 1 cut(s) 946
BtsIMutI CAGTG 3 cut(s) 946, 1046, 1375
Cac8I GCNNGC 4 cut(s) 130, 153, 169, 862
Cfr10I RCCGGY 2 cut(s) 128, 167
Cfr13I GGNCC 5 cut(s) 134, 170, 288, 305, 772
CseI GACGC 2 cut(s) 340, 1128
Csp6I GTAC 2 cut(s) 436, 684
CviAII CATG 7 cut(s) 394, 553, 760, 836, 1023, 1072, 1222
CviQI GTAC 2 cut(s) 436, 684
DdeI CTNAG 4 cut(s) 344, 490, 840, 932
DpnI GATC 8 cut(s) 38, 319, 563, 796, 810, 1003, 1052, 1220
DpnII GATC 8 cut(s) 36, 317, 561, 794, 808, 1001, 1050, 1218
Eam1104I CTCTTC 2 cut(s) 141, 1172
EarI CTCTTC 2 cut(s) 141, 1172
Ecl136II GAGCTC 1 cut(s) 247
Eco130I CCWWGG 4 cut(s) 431, 726, 983, 1022
Eco147I AGGCCT 1 cut(s) 1183
Eco24I GRGCYC 1 cut(s) 249
Eco47I GGWCC 1 cut(s) 772
Eco53kI GAGCTC 1 cut(s) 247
Eco88I CYCGRG 1 cut(s) 224
EcoICRI GAGCTC 1 cut(s) 247
EcoRII CCWGG 2 cut(s) 332, 1207
EcoT14I CCWWGG 4 cut(s) 431, 726, 983, 1022
EcoT38I GRGCYC 1 cut(s) 249
ErhI CCWWGG 4 cut(s) 431, 726, 983, 1022
FaeI CATG 7 cut(s) 397, 556, 763, 839, 1026, 1075, 1225
FaqI GGGAC 2 cut(s) 206, 758
FatI CATG 7 cut(s) 393, 552, 759, 835, 1022, 1071, 1221
FbaI TGATCA 2 cut(s) 1050, 1218
Fnu4HI GCNGC 9 cut(s) 133, 165, 274, 349, 366, 741, 846, 937, 1205
FokI GGATG 2 cut(s) 80, 1332
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 9 cut(s) 133, 165, 274, 349, 366, 741, 846, 937, 1205
FspBI CTAG 2 cut(s) 432, 984
GluI GCNGC 9 cut(s) 133, 165, 274, 349, 366, 741, 846, 937, 1205
GsuI CTGGAG 1 cut(s) 235
HaeIII GGCC 6 cut(s) 135, 171, 290, 307, 430, 1183
HapII CCGG 5 cut(s) 129, 168, 264, 295, 828
HgaI GACGC 2 cut(s) 340, 1128
Hin1I GRCGYC 1 cut(s) 351
Hin1II CATG 7 cut(s) 397, 556, 763, 839, 1026, 1075, 1225
HinfI GANTC 5 cut(s) 5, 419, 824, 975, 1231
HpaII CCGG 5 cut(s) 129, 168, 264, 295, 828
HphI GGTGA 3 cut(s) 31, 229, 1228
Hpy188I TCNGA 3 cut(s) 714, 813, 1197
Hpy188III TCNNGA 4 cut(s) 26, 34, 214, 416
HpyAV CCTTC 4 cut(s) 185, 268, 394, 604
HpyCH4III ACNGT 1 cut(s) 1279
HpyCH4V TGCA 4 cut(s) 368, 759, 1100, 1344
HpyF10VI GCNNNNNNNGC 6 cut(s) 141, 161, 273, 296, 737, 845
HpyF3I CTNAG 4 cut(s) 344, 490, 840, 932
Hsp92I GRCGYC 1 cut(s) 351
Hsp92II CATG 7 cut(s) 397, 556, 763, 839, 1026, 1075, 1225
KpnI GGTACC 1 cut(s) 439
KroI GCCGGC 2 cut(s) 128, 167
KroNI GCCGGC 2 cut(s) 130, 169
Ksp22I TGATCA 2 cut(s) 1050, 1218
Kzo9I GATC 8 cut(s) 36, 317, 561, 794, 808, 1001, 1050, 1218
LguI GCTCTTC 1 cut(s) 141
Lsp1109I GCAGC 4 cut(s) 352, 832, 948, 1191
LweI GCATC 1 cut(s) 1155
MaeI CTAG 2 cut(s) 432, 984
MalI GATC 8 cut(s) 38, 319, 563, 796, 810, 1003, 1052, 1220
MboI GATC 8 cut(s) 36, 317, 561, 794, 808, 1001, 1050, 1218
MboII GAAGA 8 cut(s) 158, 193, 586, 631, 631, 1174, 1189, 1397
MhlI GDGCHC 2 cut(s) 249, 332
MluCI AATT 6 cut(s) 1032, 1075, 1089, 1102, 1314, 1380
MmeI TCCRAC 1 cut(s) 1009
MreI CGCCGGCG 1 cut(s) 128
MroNI GCCGGC 2 cut(s) 128, 167
MroXI GAANNNNTTC 2 cut(s) 635, 1358
MseI TTAA 1 cut(s) 579
MslI CAYNNNNRTG 1 cut(s) 758
MspA1I CMGCKG 1 cut(s) 348
MspI CCGG 5 cut(s) 129, 168, 264, 295, 828
MspR9I CCNGG 5 cut(s) 264, 296, 334, 829, 1209
Mva1269I GAATGC 1 cut(s) 368
MvaI CCWGG 2 cut(s) 334, 1209
MvnI CGCG 1 cut(s) 995
MwoI GCNNNNNNNGC 6 cut(s) 141, 161, 273, 296, 737, 845
NaeI GCCGGC 2 cut(s) 130, 169
NciI CCSGG 3 cut(s) 264, 296, 829
NcoI CCATGG 1 cut(s) 1022
NdeII GATC 8 cut(s) 36, 317, 561, 794, 808, 1001, 1050, 1218
NgoMIV GCCGGC 2 cut(s) 128, 167
NlaIII CATG 7 cut(s) 397, 556, 763, 839, 1026, 1075, 1225
NlaIV GGNNCC 4 cut(s) 172, 331, 437, 774
NmeAIII GCCGAG 2 cut(s) 168, 268
NspV TTCGAA 1 cut(s) 120
PceI AGGCCT 1 cut(s) 1183
PciSI GCTCTTC 1 cut(s) 141
PctI GAATGC 1 cut(s) 368
PdiI GCCGGC 2 cut(s) 130, 169
PdmI GAANNNNTTC 2 cut(s) 635, 1358
PfeI GAWTC 5 cut(s) 5, 419, 824, 975, 1231
PflMI CCANNNNNTGG 1 cut(s) 1028
PkrI GCNGC 9 cut(s) 134, 166, 275, 350, 367, 742, 847, 938, 1206
Psp124BI GAGCTC 1 cut(s) 249
Psp6I CCWGG 2 cut(s) 332, 1207
PspGI CCWGG 2 cut(s) 332, 1207
PspN4I GGNNCC 4 cut(s) 172, 331, 437, 774
PspPI GGNCC 5 cut(s) 134, 170, 288, 305, 772
RsaI GTAC 2 cut(s) 437, 685
RsaNI GTAC 2 cut(s) 436, 684
RseI CAYNNNNRTG 1 cut(s) 758
SacI GAGCTC 1 cut(s) 249
SapI GCTCTTC 1 cut(s) 141
SaqAI TTAA 1 cut(s) 579
SatI GCNGC 9 cut(s) 133, 165, 274, 349, 366, 741, 846, 937, 1205
Sau3AI GATC 8 cut(s) 36, 317, 561, 794, 808, 1001, 1050, 1218
Sau96I GGNCC 5 cut(s) 134, 170, 288, 305, 772
ScaI AGTACT 1 cut(s) 685
ScrFI CCNGG 5 cut(s) 264, 296, 334, 829, 1209
SduI GDGCHC 2 cut(s) 249, 332
SfaNI GCATC 1 cut(s) 1155
SfuI TTCGAA 1 cut(s) 120
SgrAI CRCCGGYG 1 cut(s) 128
SinI GGWCC 1 cut(s) 772
SmiMI CAYNNNNRTG 1 cut(s) 758
Sse9I AATT 6 cut(s) 1032, 1075, 1089, 1102, 1314, 1380
SseBI AGGCCT 1 cut(s) 1183
SsiI CCGC 7 cut(s) 132, 165, 240, 273, 348, 740, 995
SspI AATATT 1 cut(s) 1340
SspMI CTAG 2 cut(s) 432, 984
SstI GAGCTC 1 cut(s) 249
StuI AGGCCT 1 cut(s) 1183
StyD4I CCNGG 5 cut(s) 262, 294, 332, 827, 1207
StyI CCWWGG 4 cut(s) 431, 726, 983, 1022
TaaI ACNGT 1 cut(s) 1279
TaqI TCGA 3 cut(s) 120, 1000, 1189
TaqII GACCGA 1 cut(s) 787
TasI AATT 6 cut(s) 1032, 1075, 1089, 1102, 1314, 1380
TatI WGTACW 1 cut(s) 683
TauI GCSGC 5 cut(s) 135, 167, 276, 351, 743
TfiI GAWTC 5 cut(s) 5, 419, 824, 975, 1231
Tru1I TTAA 1 cut(s) 579
Tru9I TTAA 1 cut(s) 579
TscAI CASTG 3 cut(s) 946, 1053, 1375
TseI GCWGC 4 cut(s) 365, 845, 936, 1204
TspDTI ATGAA 7 cut(s) 199, 824, 1083, 1088, 1135, 1214, 1349
TspRI CASTG 3 cut(s) 946, 1053, 1375
Van91I CCANNNNNTGG 1 cut(s) 1028
VpaK11BI GGWCC 1 cut(s) 772
XapI RAATTY 3 cut(s) 1032, 1075, 1102
XmaJI CCTAGG 2 cut(s) 431, 983
XmnI GAANNNNTTC 2 cut(s) 635, 1358
XspI CTAG 2 cut(s) 432, 984
ZrmI AGTACT 1 cut(s) 685
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.