Rw5G049790

polyamine transporter At3g13620

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
86343773 .. 86345853
2081 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G049790.1

Sequence Viewer

Length: 1341 bp
ATGGAATCTCCTCCAAAACCACTTCCAGACCTCCCGATCACCACCACCACAACCACCACGCCCACCACTCCAAACCCAAAGAAGCTCACTCTCATCCCTCTCATTTTCCTCATCTACTTCGAAGTCGCCGGCGGCCCGTATGGCGAAGAGCCAGCAGTTCAAGCCGCCGGCCCCCTTCTCGCCATTCTCGGCTTCCTCATCTTCCCTTTCATCTGGAGTGTCCCCGAGGCTCTCATCACCGCCGAGCTCTCCACCACCTTCCCCGGCAACGGCGGCTTTGTCATCTGGGCCGACCGGGCTTTCGGGCCTTTCTGGGGATCACTAATGGGCACCTGGAAGTTCCTCAGCGGCGTCATCAACATTGCTGCATTCCCAGTTCTATGTATAGATTACATGGAGAAGGTAATCCCTGCTCTTGAATCAGGGTGGCCTAGGTACCTTGCTGTGGGTGTTTCAACTCTGTTTCTTTCGTTTCTCAACTTTACTGGCTTAGCTATTGTGGGATACGTTGCTGTGGTTCTTGGTCTTGTTTCGCTTTCGCCTTTTATAGTCATGTCTTTGATCGCCATACCGAAGATTAAACCCCATAGGTGGTTGAGTTTGGGGCAGAAGGGTGTGAAGAAAGATTGGAACTTGTTCTTCAACACCCTGTTTTGGAACTTGAACTTTTGGGATAATCCTCGGAAAACTTTTCCCAAGGCTCTTTTTGTGGCTGTCATATTCACTTGCATGGCTTATTTGGTCCCTCTTTTCGCTGTCATTGGATCGGTCAATGTGGATCAGAGGAAATGGGAATCCGGGTTTCATGCTGAGGCTGCTGAAATCATTGCTGGCAAGTGGTTGAAGTATTGGATTGAAGTTGGTGCTGTGTTGTCTGGTATTGGTCTTTTTGAAGCTCAACTAAGCAGCAGTGCTTACCAAGTTCTTGGTATGGCAGACATAGGATTCTTGCCTAGGTTTTTCGCGGTTCGATCCAAGAGGTTTGATACCCCATGGGTTGGAATTTTGATTTCCACACTGATCACTCTTGGAGTTTCCTACATGAATTTTACAGATATAATTTCATCTGCAAATTTCTTGTATAGTTTGGGAATGTTATTGGAGTTTGCGTCTTTCATTTGGTTGAGGAGGAAGATGCCAACATTGAAGAGGCCTTATCGAGTTCCGATGAAGCTGCCAGGTTTGGTGATCATGTGTTTGATTCCATCTGGGTTTTTGATTTTTGTGATGGCTATTGCTACCAAGACGGTGTATTTGGTTAGTGCTATAATGAGCGTGGCTGGAATTGGATGGTTCTTTTTGATGAAATATTGCAAGGCAAAGAAGTTGTTCAAAGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

446

Amino Acids

49.49

Weight (kDa)

9.54

Isoelectric Point (pI)

31.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AA_permease_2 PF13520 32 - 415 1e-30 Amino acid permease
AA_permease PF00324 52 - 189 2.5e-07 Amino acid permease
AA_permease PF00324 225 - 420 6.6e-06 Amino acid permease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 435
AccB1I GGYRCC 2 cut(s) 329, 435
AccB7I CCANNNNNTGG 1 cut(s) 998
AccII CGCG 1 cut(s) 965
AciI CCGC 6 cut(s) 132, 165, 240, 273, 348, 965
AclWI GGATC 4 cut(s) 325, 772, 786, 966
AcsI RAATTY 3 cut(s) 1002, 1045, 1072
AcyI GRCGYC 1 cut(s) 351
AfaI GTAC 1 cut(s) 437
AfiI CCNNNNNNNGG 6 cut(s) 269, 314, 445, 591, 654, 998
AjnI CCWGG 2 cut(s) 332, 1177
AluBI AGCT 5 cut(s) 85, 247, 494, 896, 1174
AluI AGCT 5 cut(s) 85, 247, 494, 896, 1174
Alw21I GWGCWC 1 cut(s) 249
AlwI GGATC 4 cut(s) 325, 772, 786, 966
Ama87I CYCGRG 1 cut(s) 224
AoxI GGCC 6 cut(s) 133, 169, 288, 305, 428, 1151
ApeKI GCWGC 4 cut(s) 365, 815, 906, 1174
ApoI RAATTY 3 cut(s) 1002, 1045, 1072
ArsI GACNNNNNNTTYG 4 cut(s) 284, 316, 1237, 1269
Asp700I GAANNNNTTC 2 cut(s) 635, 1328
Asp718I GGTACC 1 cut(s) 435
AspA2I CCTAGG 2 cut(s) 431, 953
AspS9I GGNCC 5 cut(s) 134, 170, 288, 305, 742
AsuC2I CCSGG 3 cut(s) 264, 296, 799
AsuHPI GGTGA 3 cut(s) 31, 229, 1198
AsuII TTCGAA 1 cut(s) 120
AvaI CYCGRG 1 cut(s) 224
AvaII GGWCC 1 cut(s) 742
AvrII CCTAGG 2 cut(s) 431, 953
BaeGI GKGCMC 1 cut(s) 332
BanI GGYRCC 2 cut(s) 329, 435
BanII GRGCYC 1 cut(s) 249
Bbv12I GWGCWC 1 cut(s) 249
BbvCI CCTCAGC 2 cut(s) 344, 810
BbvI GCAGC 4 cut(s) 352, 802, 918, 1161
BccI CCATC 3 cut(s) 1213, 1222, 1284
BceAI ACGGC 1 cut(s) 286
BcgI CGANNNNNNTGC 2 cut(s) 1156, 1190
BciT130I CCWGG 2 cut(s) 334, 1179
BciVI GTATCC 1 cut(s) 497
BclI TGATCA 2 cut(s) 1020, 1188
BcnI CCSGG 3 cut(s) 264, 296, 799
BfaI CTAG 3 cut(s) 432, 954, 1339
BfuI GTATCC 1 cut(s) 497
BglI GCCNNNNNGGC 2 cut(s) 141, 296
BisI GCNGC 8 cut(s) 133, 165, 274, 349, 366, 816, 907, 1175
BlnI CCTAGG 2 cut(s) 431, 953
BlpI GCTNAGC 1 cut(s) 490
BlsI GCNGC 8 cut(s) 134, 166, 275, 350, 367, 817, 908, 1176
Bme1390I CCNGG 5 cut(s) 264, 296, 334, 799, 1179
Bme18I GGWCC 1 cut(s) 742
BmeT110I CYCGRG 1 cut(s) 224
BmgT120I GGNCC 5 cut(s) 134, 170, 288, 305, 742
BmiI GGNNCC 4 cut(s) 172, 331, 437, 744
BmrFI CCNGG 5 cut(s) 264, 296, 334, 799, 1179
BmrI ACTGGG 1 cut(s) 368
BmsI GCATC 1 cut(s) 1125
BmuI ACTGGG 1 cut(s) 368
BpmI CTGGAG 1 cut(s) 235
Bpu10I CCTNAGC 2 cut(s) 344, 810
Bpu1102I GCTNAGC 1 cut(s) 490
Bpu14I TTCGAA 1 cut(s) 120
BpuMI CCSGG 3 cut(s) 264, 296, 799
BsaHI GRCGYC 1 cut(s) 351
BsaJI CCNNGG 7 cut(s) 225, 262, 431, 680, 696, 953, 992
BsaXI ACNNNNNCTCC 2 cut(s) 1094, 1124
Bsc4I CCNNNNNNNGG 6 cut(s) 269, 314, 445, 591, 654, 998
Bse118I RCCGGY 2 cut(s) 128, 167
Bse1I ACTGG 2 cut(s) 374, 490
Bse3DI GCAATG 2 cut(s) 360, 825
BseBI CCWGG 2 cut(s) 334, 1179
BseDI CCNNGG 7 cut(s) 225, 262, 431, 680, 696, 953, 992
BseGI GGATG 2 cut(s) 93, 1295
BseLI CCNNNNNNNGG 6 cut(s) 269, 314, 445, 591, 654, 998
BseMI GCAATG 2 cut(s) 360, 825
BseMII CTCAG 2 cut(s) 358, 801
BseNI ACTGG 2 cut(s) 374, 490
BseRI GAGGAG 1 cut(s) 1141
BseSI GKGCMC 1 cut(s) 332
BseXI GCAGC 4 cut(s) 352, 802, 918, 1161
Bsh1236I CGCG 1 cut(s) 965
Bsh1285I CGRYCG 1 cut(s) 295
BshFI GGCC 6 cut(s) 135, 171, 290, 307, 430, 1153
BshNI GGYRCC 2 cut(s) 329, 435
BsiEI CGRYCG 1 cut(s) 295
BsiHKAI GWGCWC 1 cut(s) 249
BsiHKCI CYCGRG 1 cut(s) 224
BsiSI CCGG 5 cut(s) 129, 168, 264, 295, 798
BslFI GGGAC 2 cut(s) 206, 728
BslI CCNNNNNNNGG 6 cut(s) 269, 314, 445, 591, 654, 998
BsmFI GGGAC 2 cut(s) 206, 728
BsmI GAATGC 1 cut(s) 368
BsnI GGCC 6 cut(s) 135, 171, 290, 307, 430, 1153
BsoBI CYCGRG 1 cut(s) 224
Bsp119I TTCGAA 1 cut(s) 120
Bsp1286I GDGCHC 2 cut(s) 249, 332
Bsp143I GATC 8 cut(s) 36, 317, 561, 764, 778, 971, 1020, 1188
Bsp1720I GCTNAGC 1 cut(s) 490
Bsp19I CCATGG 1 cut(s) 992
BspACI CCGC 6 cut(s) 132, 165, 240, 273, 348, 965
BspANI GGCC 6 cut(s) 135, 171, 290, 307, 430, 1153
BspCNI CTCAG 2 cut(s) 357, 802
BspFNI CGCG 1 cut(s) 965
BspLI GGNNCC 4 cut(s) 172, 331, 437, 744
BspPI GGATC 4 cut(s) 325, 772, 786, 966
BspQI GCTCTTC 1 cut(s) 141
BspT104I TTCGAA 1 cut(s) 120
BspT107I GGYRCC 2 cut(s) 329, 435
BsrDI GCAATG 2 cut(s) 360, 825
BsrFI RCCGGY 2 cut(s) 128, 167
BsrI ACTGG 2 cut(s) 374, 490
BssAI RCCGGY 2 cut(s) 128, 167
BssECI CCNNGG 7 cut(s) 225, 262, 431, 680, 696, 953, 992
BssMI GATC 8 cut(s) 36, 317, 561, 764, 778, 971, 1020, 1188
BssNI GRCGYC 1 cut(s) 351
BssT1I CCWWGG 4 cut(s) 431, 696, 953, 992
Bst2UI CCWGG 2 cut(s) 334, 1179
Bst4CI ACNGT 1 cut(s) 1249
Bst6I CTCTTC 2 cut(s) 141, 1142
BstACI GRCGYC 1 cut(s) 351
BstBI TTCGAA 1 cut(s) 120
BstC8I GCNNGC 4 cut(s) 130, 153, 169, 832
BstDEI CTNAG 4 cut(s) 344, 490, 810, 902
BstDSI CCRYGG 1 cut(s) 992
BstF5I GGATG 2 cut(s) 93, 1295
BstFNI CGCG 1 cut(s) 965
BstKTI GATC 8 cut(s) 39, 320, 564, 767, 781, 974, 1023, 1191
BstMBI GATC 8 cut(s) 36, 317, 561, 764, 778, 971, 1020, 1188
BstMCI CGRYCG 1 cut(s) 295
BstMWI GCNNNNNNNGC 5 cut(s) 141, 161, 273, 296, 815
BstNI CCWGG 2 cut(s) 334, 1179
BstSCI CCNGG 5 cut(s) 262, 294, 332, 797, 1177
BstSLI GKGCMC 1 cut(s) 332
BstUI CGCG 1 cut(s) 965
BstV1I GCAGC 4 cut(s) 352, 802, 918, 1161
BstXI CCANNNNNNTGG 1 cut(s) 926
BsuI GTATCC 1 cut(s) 497
BsuRI GGCC 6 cut(s) 135, 171, 290, 307, 430, 1153
BtgI CCRYGG 1 cut(s) 992
BtsCI GGATG 2 cut(s) 93, 1295
BtsI GCAGTG 1 cut(s) 916
BtsIMutI CAGTG 2 cut(s) 916, 1016
Cac8I GCNNGC 4 cut(s) 130, 153, 169, 832
Cfr10I RCCGGY 2 cut(s) 128, 167
Cfr13I GGNCC 5 cut(s) 134, 170, 288, 305, 742
CseI GACGC 2 cut(s) 340, 1098
Csp6I GTAC 1 cut(s) 436
CviAII CATG 7 cut(s) 394, 553, 730, 806, 993, 1042, 1192
CviQI GTAC 1 cut(s) 436
DdeI CTNAG 4 cut(s) 344, 490, 810, 902
DpnI GATC 8 cut(s) 38, 319, 563, 766, 780, 973, 1022, 1190
DpnII GATC 8 cut(s) 36, 317, 561, 764, 778, 971, 1020, 1188
Eam1104I CTCTTC 2 cut(s) 141, 1142
EarI CTCTTC 2 cut(s) 141, 1142
Ecl136II GAGCTC 1 cut(s) 247
Eco130I CCWWGG 4 cut(s) 431, 696, 953, 992
Eco147I AGGCCT 1 cut(s) 1153
Eco24I GRGCYC 1 cut(s) 249
Eco47I GGWCC 1 cut(s) 742
Eco53kI GAGCTC 1 cut(s) 247
Eco88I CYCGRG 1 cut(s) 224
EcoICRI GAGCTC 1 cut(s) 247
EcoRII CCWGG 2 cut(s) 332, 1177
EcoT14I CCWWGG 4 cut(s) 431, 696, 953, 992
EcoT38I GRGCYC 1 cut(s) 249
ErhI CCWWGG 4 cut(s) 431, 696, 953, 992
FaeI CATG 7 cut(s) 397, 556, 733, 809, 996, 1045, 1195
FaqI GGGAC 2 cut(s) 206, 728
FatI CATG 7 cut(s) 393, 552, 729, 805, 992, 1041, 1191
FbaI TGATCA 2 cut(s) 1020, 1188
Fnu4HI GCNGC 8 cut(s) 133, 165, 274, 349, 366, 816, 907, 1175
FokI GGATG 2 cut(s) 80, 1302
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 8 cut(s) 133, 165, 274, 349, 366, 816, 907, 1175
FspBI CTAG 3 cut(s) 432, 954, 1339
GluI GCNGC 8 cut(s) 133, 165, 274, 349, 366, 816, 907, 1175
GsuI CTGGAG 1 cut(s) 235
HaeIII GGCC 6 cut(s) 135, 171, 290, 307, 430, 1153
HapII CCGG 5 cut(s) 129, 168, 264, 295, 798
HgaI GACGC 2 cut(s) 340, 1098
Hin1I GRCGYC 1 cut(s) 351
Hin1II CATG 7 cut(s) 397, 556, 733, 809, 996, 1045, 1195
HinfI GANTC 5 cut(s) 5, 419, 794, 945, 1201
HpaII CCGG 5 cut(s) 129, 168, 264, 295, 798
HphI GGTGA 3 cut(s) 31, 229, 1198
Hpy188I TCNGA 3 cut(s) 684, 783, 1167
Hpy188III TCNNGA 4 cut(s) 26, 34, 214, 416
HpyAV CCTTC 4 cut(s) 185, 268, 394, 604
HpyCH4III ACNGT 1 cut(s) 1249
HpyCH4IV ACGT 1 cut(s) 507
HpyCH4V TGCA 4 cut(s) 368, 729, 1070, 1314
HpyF10VI GCNNNNNNNGC 5 cut(s) 141, 161, 273, 296, 815
HpyF3I CTNAG 4 cut(s) 344, 490, 810, 902
HpySE526I ACGT 1 cut(s) 507
Hsp92I GRCGYC 1 cut(s) 351
Hsp92II CATG 7 cut(s) 397, 556, 733, 809, 996, 1045, 1195
KpnI GGTACC 1 cut(s) 439
KroI GCCGGC 2 cut(s) 128, 167
KroNI GCCGGC 2 cut(s) 130, 169
Ksp22I TGATCA 2 cut(s) 1020, 1188
Kzo9I GATC 8 cut(s) 36, 317, 561, 764, 778, 971, 1020, 1188
LguI GCTCTTC 1 cut(s) 141
Lsp1109I GCAGC 4 cut(s) 352, 802, 918, 1161
LweI GCATC 1 cut(s) 1125
MaeI CTAG 3 cut(s) 432, 954, 1339
MaeII ACGT 1 cut(s) 507
MalI GATC 8 cut(s) 38, 319, 563, 766, 780, 973, 1022, 1190
MboI GATC 8 cut(s) 36, 317, 561, 764, 778, 971, 1020, 1188
MboII GAAGA 7 cut(s) 158, 193, 586, 631, 631, 1144, 1159
MhlI GDGCHC 2 cut(s) 249, 332
MluCI AATT 5 cut(s) 1002, 1045, 1059, 1072, 1284
MmeI TCCRAC 1 cut(s) 979
MreI CGCCGGCG 1 cut(s) 128
MroNI GCCGGC 2 cut(s) 128, 167
MroXI GAANNNNTTC 2 cut(s) 635, 1328
MseI TTAA 1 cut(s) 579
MslI CAYNNNNRTG 1 cut(s) 728
MspA1I CMGCKG 1 cut(s) 348
MspI CCGG 5 cut(s) 129, 168, 264, 295, 798
MspR9I CCNGG 5 cut(s) 264, 296, 334, 799, 1179
Mva1269I GAATGC 1 cut(s) 368
MvaI CCWGG 2 cut(s) 334, 1179
MvnI CGCG 1 cut(s) 965
MwoI GCNNNNNNNGC 5 cut(s) 141, 161, 273, 296, 815
NaeI GCCGGC 2 cut(s) 130, 169
NciI CCSGG 3 cut(s) 264, 296, 799
NcoI CCATGG 1 cut(s) 992
NdeII GATC 8 cut(s) 36, 317, 561, 764, 778, 971, 1020, 1188
NgoMIV GCCGGC 2 cut(s) 128, 167
NlaIII CATG 7 cut(s) 397, 556, 733, 809, 996, 1045, 1195
NlaIV GGNNCC 4 cut(s) 172, 331, 437, 744
NmeAIII GCCGAG 2 cut(s) 168, 268
NspV TTCGAA 1 cut(s) 120
PceI AGGCCT 1 cut(s) 1153
PciSI GCTCTTC 1 cut(s) 141
PctI GAATGC 1 cut(s) 368
PdiI GCCGGC 2 cut(s) 130, 169
PdmI GAANNNNTTC 2 cut(s) 635, 1328
PfeI GAWTC 5 cut(s) 5, 419, 794, 945, 1201
PflMI CCANNNNNTGG 1 cut(s) 998
PkrI GCNGC 8 cut(s) 134, 166, 275, 350, 367, 817, 908, 1176
Psp124BI GAGCTC 1 cut(s) 249
Psp6I CCWGG 2 cut(s) 332, 1177
PspGI CCWGG 2 cut(s) 332, 1177
PspN4I GGNNCC 4 cut(s) 172, 331, 437, 744
PspPI GGNCC 5 cut(s) 134, 170, 288, 305, 742
RsaI GTAC 1 cut(s) 437
RsaNI GTAC 1 cut(s) 436
RseI CAYNNNNRTG 1 cut(s) 728
SacI GAGCTC 1 cut(s) 249
SapI GCTCTTC 1 cut(s) 141
SaqAI TTAA 1 cut(s) 579
SatI GCNGC 8 cut(s) 133, 165, 274, 349, 366, 816, 907, 1175
Sau3AI GATC 8 cut(s) 36, 317, 561, 764, 778, 971, 1020, 1188
Sau96I GGNCC 5 cut(s) 134, 170, 288, 305, 742
ScrFI CCNGG 5 cut(s) 264, 296, 334, 799, 1179
SduI GDGCHC 2 cut(s) 249, 332
SfaNI GCATC 1 cut(s) 1125
SfuI TTCGAA 1 cut(s) 120
SgrAI CRCCGGYG 1 cut(s) 128
SinI GGWCC 1 cut(s) 742
SmiMI CAYNNNNRTG 1 cut(s) 728
Sse9I AATT 5 cut(s) 1002, 1045, 1059, 1072, 1284
SseBI AGGCCT 1 cut(s) 1153
SsiI CCGC 6 cut(s) 132, 165, 240, 273, 348, 965
SspI AATATT 1 cut(s) 1310
SspMI CTAG 3 cut(s) 432, 954, 1339
SstI GAGCTC 1 cut(s) 249
StuI AGGCCT 1 cut(s) 1153
StyD4I CCNGG 5 cut(s) 262, 294, 332, 797, 1177
StyI CCWWGG 4 cut(s) 431, 696, 953, 992
TaaI ACNGT 1 cut(s) 1249
TaiI ACGT 1 cut(s) 510
TaqI TCGA 3 cut(s) 120, 970, 1159
TaqII GACCGA 1 cut(s) 757
TasI AATT 5 cut(s) 1002, 1045, 1059, 1072, 1284
TauI GCSGC 4 cut(s) 135, 167, 276, 351
TfiI GAWTC 5 cut(s) 5, 419, 794, 945, 1201
Tru1I TTAA 1 cut(s) 579
Tru9I TTAA 1 cut(s) 579
TscAI CASTG 2 cut(s) 916, 1023
TseI GCWGC 4 cut(s) 365, 815, 906, 1174
TspDTI ATGAA 7 cut(s) 199, 794, 1053, 1058, 1105, 1184, 1319
TspRI CASTG 2 cut(s) 916, 1023
Van91I CCANNNNNTGG 1 cut(s) 998
VpaK11BI GGWCC 1 cut(s) 742
XapI RAATTY 3 cut(s) 1002, 1045, 1072
XmaJI CCTAGG 2 cut(s) 431, 953
XmnI GAANNNNTTC 2 cut(s) 635, 1328
XspI CTAG 3 cut(s) 432, 954, 1339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.