Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0011363

Physical Location & Seq

Genomic Coordinates Forward (+)

25611607 .. 25612711

Gene Structure 1105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g24020.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGTATGTAACTTTAATTTTTTTAGCACCTTCCTTATCACCTTTTCTCCTTAATCTTTCACTTTTATATTTTCCCTTTTTTACTCTTTCAATCAGTGGCAGTCAAAATGCATATTTTAAACCTGCAGATGGCATTGAAATTTGTGTGTGGCAGCAAGTTGCAATCTCTGTTTCTACTCTGATTATATCTTTCGTAAACTATACTGGTTTAACTATTGTTGGATATGCTGCTGTTCTTCTCGCTGTCGCTTCCCTTTCGCCTTTTATTTTGATGTGTTTGATTGCCATTCCGAAGATTCATCCTCACCGTTGGTTGAGTCTCGGGCGGAAGGGTGTTGAGAAAGATTGGAACTTGTTCTTCAACACCCTCTTTTGGAATTTAAATTTTTGGGACAATGTGAGTACTTTAGCTGGGGAAGTAGATAACCCCCAAAAAACTTTTCCGGTGGCTCTTTTCGTGGCAGTGATCTTTACTTGCTTGGCGTACTTGTTCCCGCTTTTTGCTGTTATTGGTTCGGTTAATATGGATCAAACTAGATGGGGTTCTGGATTTCATGCAGATGCAGTCAAAATGCATATTTTAAACCTGCAGATGGCAGTCAAAATGCATAAGATTTTGTTTAAATTTGTGTGTGGCAGCAAGTTGAAATTTGTCAGCATATTCTTTGTAACATCCCGTCCCAAATTTCATTTTAACGTACGTGTGAATTTACGATTTTACCCCTTAATTCGTTTTTATCACATTTGTGTTGTGTGGTGTGGTGTTGTAGGACCACACACACTCATACACTCTCTTTTCTCCAGGGATTCCCTCCCTCTTTCCCTCACTTTCTGTCACTCTGTCTCTCTCTCTCTCTCTCTCCCCGAGTCCATCTTCTTCTTCTTCCTTCTGCAAACACACGGACTACACACAAACACACTCAAAACTTTCACCAATCAAGAAACCAATTACACCATTGAACTCGTGAGGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0042802

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

325

Amino Acids

36.86

Weight (kDa)

9.27

Isoelectric Point (pI)

44.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13620
fragaria_vesca	FvH4_3g45240
malus_domestica	MD03G1006800.v1.1 MD11G1010000.v1.1
prunus_persica	Prupe.6G006500_v2.0.a1
pyrus_communis	pycom03g00710 pycom05g24020 pycom11g00630
rosa_chinensis	RchiOBHm_Chr5g0082861
rosa_laevigata	RLG00000036995
rosa_multiflora	Rmu_co8414725.1_g000001 Rmu_sc0001381.1_g000012 Rmu_sc0007172.1_g000003
rosa_roxburghii	Rroxscaffold_1G00001580
rosa_rugosa	Rorug05G0480400
rosa_samantha	Rh5AG530800 Rh5BG557700 Rh5CG580700 Rh5DG566000
rosa_wichuraiana	Rw5G049790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	130, 594
AciI	CCGC	2 cut(s)	325, 494
AclWI	GGATC	1 cut(s)	534
AcsI	RAATTY	7 cut(s)	138, 376, 382, 623, 647, 683, 706
AfaI	GTAC	3 cut(s)	403, 485, 699
AfiI	CCNNNNNNNGG	3 cut(s)	128, 372, 592
AflIII	ACRYGT	1 cut(s)	700
AgsI	TTSAA	5 cut(s)	90, 137, 361, 646, 959
AjnI	CCWGG	1 cut(s)	800
AjuI	GAANNNNNNNTTGG	2 cut(s)	423, 455
AleI	CACNNNNGTG	1 cut(s)	744
AluBI	AGCT	1 cut(s)	410
AluI	AGCT	1 cut(s)	410
Alw26I	GTCTC	2 cut(s)	323, 847
AlwI	GGATC	1 cut(s)	534
Ama87I	CYCGRG	2 cut(s)	320, 863
ApeKI	GCWGC	3 cut(s)	151, 227, 636
ApoI	RAATTY	7 cut(s)	138, 376, 382, 623, 647, 683, 706
Asp700I	GAANNNNTTC	1 cut(s)	353
AspS9I	GGNCC	1 cut(s)	770
AsuHPI	GGTGA	3 cut(s)	30, 296, 922
AvaI	CYCGRG	2 cut(s)	320, 863
AvaII	GGWCC	1 cut(s)	770
BauI	CACGAG	1 cut(s)	962
BbvI	GCAGC	3 cut(s)	163, 214, 648
BccI	CCATC	4 cut(s)	122, 531, 586, 878
BciT130I	CCWGG	1 cut(s)	802
BcoDI	GTCTC	2 cut(s)	323, 847
BfaI	CTAG	1 cut(s)	534
BfmI	CTRYAG	2 cut(s)	123, 587
BfuAI	ACCTGC	2 cut(s)	130, 594
BisI	GCNGC	3 cut(s)	152, 228, 637
BlsI	GCNGC	3 cut(s)	153, 229, 638
BmcAI	AGTACT	1 cut(s)	403
Bme1390I	CCNGG	1 cut(s)	802
Bme18I	GGWCC	1 cut(s)	770
BmeT110I	CYCGRG	2 cut(s)	320, 863
BmgT120I	GGNCC	1 cut(s)	770
BmrFI	CCNGG	1 cut(s)	802
BmsI	GCATC	1 cut(s)	550
BpmI	CTGGAG	1 cut(s)	784
BsaAI	YACGTR	1 cut(s)	701
BsaJI	CCNNGG	1 cut(s)	801
BsaWI	WCCGGW	1 cut(s)	442
BsaXI	ACNNNNNCTCC	2 cut(s)	30, 60
Bsc4I	CCNNNNNNNGG	3 cut(s)	128, 372, 592
Bse1I	ACTGG	1 cut(s)	208
BseBI	CCWGG	1 cut(s)	802
BseDI	CCNNGG	1 cut(s)	801
BseGI	GGATG	2 cut(s)	298, 671
BseLI	CCNNNNNNNGG	3 cut(s)	128, 372, 592
BseNI	ACTGG	1 cut(s)	208
BseXI	GCAGC	3 cut(s)	163, 214, 648
BseYI	CCCAGC	1 cut(s)	410
BsiHKCI	CYCGRG	2 cut(s)	320, 863
BsiSI	CCGG	1 cut(s)	443
BsiWI	CGTACG	1 cut(s)	697
BslFI	GGGAC	2 cut(s)	404, 663
BslI	CCNNNNNNNGG	3 cut(s)	128, 372, 592
BsmAI	GTCTC	2 cut(s)	323, 847
BsmFI	GGGAC	2 cut(s)	404, 663
BsoBI	CYCGRG	2 cut(s)	320, 863
Bsp143I	GATC	2 cut(s)	465, 526
BspACI	CCGC	2 cut(s)	325, 494
BspMAI	CTGCAG	2 cut(s)	127, 591
BspMI	ACCTGC	2 cut(s)	130, 594
BspPI	GGATC	1 cut(s)	534
BsrI	ACTGG	1 cut(s)	208
BssECI	CCNNGG	1 cut(s)	801
BssMI	GATC	2 cut(s)	465, 526
BssSI	CACGAG	1 cut(s)	962
Bst2BI	CACGAG	1 cut(s)	962
Bst2UI	CCWGG	1 cut(s)	802
Bst4CI	ACNGT	1 cut(s)	308
BstBAI	YACGTR	1 cut(s)	701
BstF5I	GGATG	2 cut(s)	298, 671
BstKTI	GATC	2 cut(s)	468, 529
BstMAI	GTCTC	2 cut(s)	323, 847
BstMBI	GATC	2 cut(s)	465, 526
BstNI	CCWGG	1 cut(s)	802
BstSCI	CCNGG	1 cut(s)	800
BstSFI	CTRYAG	2 cut(s)	123, 587
BstV1I	GCAGC	3 cut(s)	163, 214, 648
BtsCI	GGATG	2 cut(s)	298, 671
BtsI	GCAGTG	1 cut(s)	468
BtsIMutI	CAGTG	2 cut(s)	100, 468
BveI	ACCTGC	2 cut(s)	130, 594
Cfr13I	GGNCC	1 cut(s)	770
Csp6I	GTAC	3 cut(s)	402, 484, 698
CviAII	CATG	1 cut(s)	554
CviJI	RGCY	2 cut(s)	410, 449
CviKI_1	RGCY	2 cut(s)	410, 449
CviQI	GTAC	3 cut(s)	402, 484, 698
DpnI	GATC	2 cut(s)	467, 528
DpnII	GATC	2 cut(s)	465, 526
DraI	TTTAAA	4 cut(s)	118, 381, 582, 622
EciI	GGCGGA	1 cut(s)	340
Eco47I	GGWCC	1 cut(s)	770
Eco88I	CYCGRG	2 cut(s)	320, 863
EcoRII	CCWGG	1 cut(s)	800
EcoT22I	ATGCAT	3 cut(s)	112, 576, 609
FaeI	CATG	1 cut(s)	557
FaqI	GGGAC	2 cut(s)	404, 663
FatI	CATG	1 cut(s)	553
FauI	CCCGC	1 cut(s)	501
Fnu4HI	GCNGC	3 cut(s)	152, 228, 637
FokI	GGATG	2 cut(s)	285, 658
Fsp4HI	GCNGC	3 cut(s)	152, 228, 637
FspBI	CTAG	1 cut(s)	534
GluI	GCNGC	3 cut(s)	152, 228, 637
GsaI	CCCAGC	1 cut(s)	414
GsuI	CTGGAG	1 cut(s)	784
HapII	CCGG	1 cut(s)	443
Hin1II	CATG	1 cut(s)	557
HinfI	GANTC	4 cut(s)	295, 316, 806, 866
HpaII	CCGG	1 cut(s)	443
HphI	GGTGA	3 cut(s)	30, 296, 922
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	2 cut(s)	180, 291
Hpy188III	TCNNGA	3 cut(s)	546, 938, 964
Hpy8I	GTNNAC	1 cut(s)	196
HpyAV	CCTTC	3 cut(s)	39, 322, 896
HpyCH4III	ACNGT	1 cut(s)	308
HpyCH4IV	ACGT	2 cut(s)	696, 700
HpyCH4V	TGCA	9 cut(s)	110, 125, 161, 557, 563, 574, 589, 607, 892
HpySE526I	ACGT	2 cut(s)	696, 700
Hsp92II	CATG	1 cut(s)	557
Kzo9I	GATC	2 cut(s)	465, 526
LpnPI	CCDG	8 cut(s)	135, 189, 396, 456, 531, 599, 787, 814
Lsp1109I	GCAGC	3 cut(s)	163, 214, 648
LweI	GCATC	1 cut(s)	550
MaeI	CTAG	1 cut(s)	534
MaeII	ACGT	2 cut(s)	696, 700
MaeIII	GTNAC	3 cut(s)	7, 667, 833
MalI	GATC	2 cut(s)	467, 528
MboI	GATC	2 cut(s)	465, 526
MboII	GAAGA	7 cut(s)	227, 304, 349, 865, 868, 871, 874
MlyI	GAGTC	2 cut(s)	325, 875
MmeI	TCCRAC	1 cut(s)	199
MnlI	CCTC	6 cut(s)	312, 377, 821, 825, 833, 960
Mph1103I	ATGCAT	3 cut(s)	112, 576, 609
MroXI	GAANNNNTTC	1 cut(s)	353
MslI	CAYNNNNRTG	2 cut(s)	558, 744
MspI	CCGG	1 cut(s)	443
MspR9I	CCNGG	1 cut(s)	802
MvaI	CCWGG	1 cut(s)	802
NdeII	GATC	2 cut(s)	465, 526
NlaIII	CATG	1 cut(s)	557
NmuCI	GTSAC	1 cut(s)	833
NsiI	ATGCAT	3 cut(s)	112, 576, 609
OliI	CACNNNNGTG	1 cut(s)	744
PdmI	GAANNNNTTC	1 cut(s)	353
PfeI	GAWTC	2 cut(s)	295, 806
Pfl23II	CGTACG	1 cut(s)	697
PkrI	GCNGC	3 cut(s)	153, 229, 638
PleI	GAGTC	2 cut(s)	324, 874
PpsI	GAGTC	2 cut(s)	324, 874
Ppu21I	YACGTR	1 cut(s)	701
Psp6I	CCWGG	1 cut(s)	800
PspFI	CCCAGC	1 cut(s)	410
PspGI	CCWGG	1 cut(s)	800
PspLI	CGTACG	1 cut(s)	697
PspPI	GGNCC	1 cut(s)	770
PstI	CTGCAG	2 cut(s)	127, 591
RsaI	GTAC	3 cut(s)	403, 485, 699
RsaNI	GTAC	3 cut(s)	402, 484, 698
RseI	CAYNNNNRTG	2 cut(s)	558, 744
SatI	GCNGC	3 cut(s)	152, 228, 637
Sau3AI	GATC	2 cut(s)	465, 526
Sau96I	GGNCC	1 cut(s)	770
ScaI	AGTACT	1 cut(s)	403
SchI	GAGTC	2 cut(s)	325, 875
ScrFI	CCNGG	1 cut(s)	802
SetI	ASST	8 cut(s)	31, 43, 124, 412, 588, 699, 703, 971
SfaNI	GCATC	1 cut(s)	550
SfcI	CTRYAG	2 cut(s)	123, 587
SinI	GGWCC	1 cut(s)	770
SmiI	ATTTAAAT	1 cut(s)	381
SmiMI	CAYNNNNRTG	2 cut(s)	558, 744
SsiI	CCGC	2 cut(s)	325, 494
SspMI	CTAG	1 cut(s)	534
StyD4I	CCNGG	1 cut(s)	800
SwaI	ATTTAAAT	1 cut(s)	381
TaaI	ACNGT	1 cut(s)	308
TaiI	ACGT	2 cut(s)	699, 703
TatI	WGTACW	1 cut(s)	401
TfiI	GAWTC	2 cut(s)	295, 806
TscAI	CASTG	2 cut(s)	100, 468
TseFI	GTSAC	1 cut(s)	833
TseI	GCWGC	3 cut(s)	151, 227, 636
Tsp45I	GTSAC	1 cut(s)	833
TspDTI	ATGAA	3 cut(s)	287, 542, 677
TspGWI	ACGGA	1 cut(s)	915
TspRI	CASTG	2 cut(s)	100, 468
VpaK11BI	GGWCC	1 cut(s)	770
XapI	RAATTY	7 cut(s)	138, 376, 382, 623, 647, 683, 706
XmnI	GAANNNNTTC	1 cut(s)	353
XspI	CTAG	1 cut(s)	534
ZrmI	AGTACT	1 cut(s)	403
Zsp2I	ATGCAT	3 cut(s)	112, 576, 609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.