pycom03g00710

polyamine transporter At3g13620

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Reverse (-)
579583 .. 580901
1319 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g00710.2

Sequence Viewer

Length: 1254 bp
ATGCCAAACCAAGAGTCCACTATGGAACCTTCTTCAAAAACTGCAATGGTTCCTCAAGACCTTCCCGTCACCACCGCCGCCACCACCACAACCGCTGCCACAAACCGAAAGAAGCTCACCCTGATCCCTCTCATCTTCCTCATCTACTTTGAAGTTGCCGGCGGCCCTTTTGGAGAAGAGCCTGCAGTGCAAGCCGCAGGACCCCTTTTCGCCCTTCTCGGCTTCCTCATCTTCCCATTTATCTGGAGTGTCCCGGAAGCTCTCATCACTGCAGAGCTCTCCACCGCCTTCCCTGGAAATGGCGGTTATGTCATCTGGGCCGACCGTGCTTTTGGCCCTTTCTGGGGCTCTTTGATGGGCACCTGGAAGTACCTAAGCGGCGTCATCAACATTGCAGCATTTCCAGTTCTTTGCATTGATTACATGGACAAGATAATCCCTGCTTTTGAATCCGGTTGGCCTAGGCATCTTGCAATCTCTGTTTCTACTCTGATTCTATCTTTCGTAAACTATACTGGTTTAACTATTGTTGGATATGCTGCTGTTCTTCTCGCTGTCGCTTCCCTTTCGCCTTTTATTTTGATGTGTTTGATTGCCATTCCGAAGATTCATCCTCACCGTTGGTTGAGTCTCGGGCGGAAGGGTGTGGAGAAAGATTGGAACTTGTTCTTCAACACCCTCTTTTGGAATTTAAATTTTTGGGACAATGTGAGTACTTTAGCTGGGGAAGTAGATAACCCCCAAAAAACTTTTCCGGTGGCTCTTTTCGTGGCGGTGATCTTTACTTGCTTGGCGTACTTGTTCCCGCTTTTTGCTGTTATTGGTTCGGTTAATGTGGATCAAACTAGATGGGGTTCTGGATTTCATGCAGAGGCTGCTGAAATGATTGCTGGAAAATGGTTGAAGTATTGGATTGAAGTTGGTGCAGTGTTATCTGGAATTGGACTTTTTGAAGCACAACTAAGCAGTTACGGTTACCAACTTCTTGGCATGGCGAATTTAGGGTTCTTGCCTAAGTTTTTTGCTCTTCGGTCCAGTAGGTTTAACACCCCGTGGGTCGGAATTTTACTTTCCACAGTGATAATTCTTGCAGTTTCCTTCATGAACTTTACAGATATTATTGCATCTGCAAATGTCTTGTACAGTTTGGGAATGCTATTGGAATTTTCTGCTTTTCTTTGGTTGAGGAGGAAGTTGCCAGCATTGAAGAGGCCTTATCGAGTTCCGATGAGGCTGCCAGGACTGTGTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

418

Amino Acids

46.0

Weight (kDa)

8.57

Isoelectric Point (pI)

36.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 65
AccB1I GGYRCC 1 cut(s) 359
AclWI GGATC 2 cut(s) 118, 846
AcsI RAATTY 5 cut(s) 688, 694, 997, 1062, 1163
AcyI GRCGYC 1 cut(s) 381
AdeI CACNNNGTG 1 cut(s) 1053
AfaI GTAC 5 cut(s) 371, 715, 797, 1142, 1249
AfiI CCNNNNNNNGG 5 cut(s) 299, 343, 344, 684, 1058
AgsI TTSAA 8 cut(s) 36, 152, 449, 673, 904, 917, 953, 1207
AjnI CCWGG 3 cut(s) 292, 362, 1237
AjuI GAANNNNNNNTTGG 2 cut(s) 735, 767
AluBI AGCT 4 cut(s) 115, 260, 277, 722
AluI AGCT 4 cut(s) 115, 260, 277, 722
Alw21I GWGCWC 1 cut(s) 279
Alw26I GTCTC 1 cut(s) 635
AlwI GGATC 2 cut(s) 118, 846
AlwNI CAGNNNCTG 1 cut(s) 875
Ama87I CYCGRG 1 cut(s) 632
AoxI GGCC 5 cut(s) 163, 318, 334, 458, 1211
ApeKI GCWGC 5 cut(s) 95, 395, 539, 875, 1234
ApoI RAATTY 5 cut(s) 688, 694, 997, 1062, 1163
ArsI GACNNNNNNTTYG 3 cut(s) 31, 314, 346
Asp700I GAANNNNTTC 1 cut(s) 665
AspA2I CCTAGG 1 cut(s) 461
AspS9I GGNCC 5 cut(s) 164, 200, 318, 335, 1032
AsuC2I CCSGG 1 cut(s) 254
AsuHPI GGTGA 4 cut(s) 61, 109, 608, 787
AvaI CYCGRG 1 cut(s) 632
AvaII GGWCC 2 cut(s) 200, 1032
AvrII CCTAGG 1 cut(s) 461
BaeGI GKGCMC 1 cut(s) 362
BanI GGYRCC 1 cut(s) 359
BanII GRGCYC 2 cut(s) 279, 350
Bbv12I GWGCWC 1 cut(s) 279
BbvI GCAGC 5 cut(s) 82, 407, 526, 862, 1221
BccI CCATC 2 cut(s) 349, 843
BcgI CGANNNNNNTGC 2 cut(s) 1216, 1250
BciT130I CCWGG 3 cut(s) 294, 364, 1239
BcnI CCSGG 1 cut(s) 254
BcoDI GTCTC 1 cut(s) 635
BfaI CTAG 2 cut(s) 462, 846
BfmI CTRYAG 2 cut(s) 183, 270
BisI GCNGC 9 cut(s) 78, 96, 163, 195, 379, 396, 540, 876, 1235
BlnI CCTAGG 1 cut(s) 461
BlsI GCNGC 9 cut(s) 79, 97, 164, 196, 380, 397, 541, 877, 1236
BmcAI AGTACT 1 cut(s) 715
Bme1390I CCNGG 4 cut(s) 254, 294, 364, 1239
Bme18I GGWCC 2 cut(s) 200, 1032
BmeT110I CYCGRG 1 cut(s) 632
BmgT120I GGNCC 5 cut(s) 164, 200, 318, 335, 1032
BmiI GGNNCC 4 cut(s) 27, 51, 202, 361
BmrFI CCNGG 4 cut(s) 254, 294, 364, 1239
BmsI GCATC 2 cut(s) 475, 1133
BpmI CTGGAG 1 cut(s) 265
Bpu10I CCTNAGC 1 cut(s) 374
BpuEI CTTGAG 1 cut(s) 39
BpuMI CCSGG 1 cut(s) 254
BsaHI GRCGYC 1 cut(s) 381
BsaJI CCNNGG 3 cut(s) 292, 461, 1052
BsaWI WCCGGW 2 cut(s) 452, 754
Bsc4I CCNNNNNNNGG 5 cut(s) 299, 343, 344, 684, 1058
Bse118I RCCGGY 1 cut(s) 158
Bse1I ACTGG 3 cut(s) 404, 520, 1035
Bse3DI GCAATG 2 cut(s) 51, 390
BseBI CCWGG 3 cut(s) 294, 364, 1239
BseDI CCNNGG 3 cut(s) 292, 461, 1052
BseGI GGATG 1 cut(s) 610
BseLI CCNNNNNNNGG 5 cut(s) 299, 343, 344, 684, 1058
BseMI GCAATG 2 cut(s) 51, 390
BseNI ACTGG 3 cut(s) 404, 520, 1035
BseRI GAGGAG 1 cut(s) 1201
BseSI GKGCMC 1 cut(s) 362
BseXI GCAGC 5 cut(s) 82, 407, 526, 862, 1221
BseYI CCCAGC 1 cut(s) 722
BsgI GTGCAG 1 cut(s) 945
Bsh1285I CGRYCG 1 cut(s) 325
BshFI GGCC 5 cut(s) 165, 320, 336, 460, 1213
BshNI GGYRCC 1 cut(s) 359
BsiEI CGRYCG 1 cut(s) 325
BsiHKAI GWGCWC 1 cut(s) 279
BsiHKCI CYCGRG 1 cut(s) 632
BsiSI CCGG 4 cut(s) 159, 254, 453, 755
BslFI GGGAC 2 cut(s) 236, 716
BslI CCNNNNNNNGG 5 cut(s) 299, 343, 344, 684, 1058
BsmAI GTCTC 1 cut(s) 635
BsmFI GGGAC 2 cut(s) 236, 716
BsmI GAATGC 1 cut(s) 1158
BsnI GGCC 5 cut(s) 165, 320, 336, 460, 1213
BsoBI CYCGRG 1 cut(s) 632
Bsp1286I GDGCHC 3 cut(s) 279, 350, 362
Bsp1407I TGTACA 1 cut(s) 1140
Bsp143I GATC 3 cut(s) 123, 777, 838
BspANI GGCC 5 cut(s) 165, 320, 336, 460, 1213
BspHI TCATGA 1 cut(s) 1101
BspLI GGNNCC 4 cut(s) 27, 51, 202, 361
BspMAI CTGCAG 2 cut(s) 187, 274
BspPI GGATC 2 cut(s) 118, 846
BspQI GCTCTTC 2 cut(s) 171, 1032
BspT107I GGYRCC 1 cut(s) 359
BsrDI GCAATG 2 cut(s) 51, 390
BsrFI RCCGGY 1 cut(s) 158
BsrGI TGTACA 1 cut(s) 1140
BsrI ACTGG 3 cut(s) 404, 520, 1035
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 3 cut(s) 292, 461, 1052
BssMI GATC 3 cut(s) 123, 777, 838
BssNI GRCGYC 1 cut(s) 381
BssT1I CCWWGG 1 cut(s) 461
Bst2UI CCWGG 3 cut(s) 294, 364, 1239
Bst4CI ACNGT 6 cut(s) 326, 620, 974, 1078, 1145, 1245
Bst6I CTCTTC 3 cut(s) 171, 1032, 1202
BstACI GRCGYC 1 cut(s) 381
BstAPI GCANNNNNTGC 1 cut(s) 875
BstAUI TGTACA 1 cut(s) 1140
BstC8I GCNNGC 4 cut(s) 160, 183, 192, 1200
BstDEI CTNAG 3 cut(s) 374, 962, 1014
BstDSI CCRYGG 1 cut(s) 1052
BstEII GGTNACC 1 cut(s) 974
BstF5I GGATG 1 cut(s) 610
BstKTI GATC 3 cut(s) 126, 780, 841
BstMAI GTCTC 1 cut(s) 635
BstMBI GATC 3 cut(s) 123, 777, 838
BstMCI CGRYCG 1 cut(s) 325
BstMWI GCNNNNNNNGC 4 cut(s) 187, 191, 326, 875
BstNI CCWGG 3 cut(s) 294, 364, 1239
BstPI GGTNACC 1 cut(s) 974
BstSCI CCNGG 4 cut(s) 252, 292, 362, 1237
BstSFI CTRYAG 2 cut(s) 183, 270
BstSLI GKGCMC 1 cut(s) 362
BstV1I GCAGC 5 cut(s) 82, 407, 526, 862, 1221
BstXI CCANNNNNNTGG 2 cut(s) 243, 986
BsuRI GGCC 5 cut(s) 165, 320, 336, 460, 1213
BtgI CCRYGG 1 cut(s) 1052
BtsCI GGATG 1 cut(s) 610
BtsI GCAGTG 3 cut(s) 192, 267, 933
BtsIMutI CAGTG 4 cut(s) 192, 267, 933, 1083
Cac8I GCNNGC 4 cut(s) 160, 183, 192, 1200
CaiI CAGNNNCTG 1 cut(s) 875
CciI TCATGA 1 cut(s) 1101
Cfr10I RCCGGY 1 cut(s) 158
Cfr13I GGNCC 5 cut(s) 164, 200, 318, 335, 1032
CseI GACGC 1 cut(s) 370
Csp6I GTAC 5 cut(s) 370, 714, 796, 1141, 1248
CviAII CATG 4 cut(s) 424, 866, 991, 1102
CviQI GTAC 5 cut(s) 370, 714, 796, 1141, 1248
DdeI CTNAG 3 cut(s) 374, 962, 1014
DpnI GATC 3 cut(s) 125, 779, 840
DpnII GATC 3 cut(s) 123, 777, 838
DraI TTTAAA 1 cut(s) 693
DraIII CACNNNGTG 1 cut(s) 1053
DrdI GACNNNNNNGTC 1 cut(s) 65
DseDI GACNNNNNNGTC 1 cut(s) 65
Eam1104I CTCTTC 3 cut(s) 171, 1032, 1202
EarI CTCTTC 3 cut(s) 171, 1032, 1202
EciI GGCGGA 1 cut(s) 652
Ecl136II GAGCTC 1 cut(s) 277
Eco130I CCWWGG 1 cut(s) 461
Eco147I AGGCCT 1 cut(s) 1213
Eco24I GRGCYC 2 cut(s) 279, 350
Eco47I GGWCC 2 cut(s) 200, 1032
Eco53kI GAGCTC 1 cut(s) 277
Eco88I CYCGRG 1 cut(s) 632
Eco91I GGTNACC 1 cut(s) 974
EcoICRI GAGCTC 1 cut(s) 277
EcoO109I RGGNCCY 1 cut(s) 200
EcoO65I GGTNACC 1 cut(s) 974
EcoRII CCWGG 3 cut(s) 292, 362, 1237
EcoT14I CCWWGG 1 cut(s) 461
EcoT38I GRGCYC 2 cut(s) 279, 350
ErhI CCWWGG 1 cut(s) 461
FaeI CATG 4 cut(s) 427, 869, 994, 1105
FaiI YATR 8 cut(s) 23, 309, 425, 513, 537, 867, 992, 1103
FaqI GGGAC 2 cut(s) 236, 716
FatI CATG 4 cut(s) 423, 865, 990, 1101
FauI CCCGC 1 cut(s) 813
Fnu4HI GCNGC 9 cut(s) 78, 96, 163, 195, 379, 396, 540, 876, 1235
FokI GGATG 1 cut(s) 597
FriOI GRGCYC 2 cut(s) 279, 350
Fsp4HI GCNGC 9 cut(s) 78, 96, 163, 195, 379, 396, 540, 876, 1235
FspBI CTAG 2 cut(s) 462, 846
GluI GCNGC 9 cut(s) 78, 96, 163, 195, 379, 396, 540, 876, 1235
GsaI CCCAGC 1 cut(s) 726
GsuI CTGGAG 1 cut(s) 265
HaeIII GGCC 5 cut(s) 165, 320, 336, 460, 1213
HapII CCGG 4 cut(s) 159, 254, 453, 755
HgaI GACGC 1 cut(s) 370
Hin1I GRCGYC 1 cut(s) 381
Hin1II CATG 4 cut(s) 427, 869, 994, 1105
HinfI GANTC 5 cut(s) 14, 449, 493, 607, 628
HpaII CCGG 4 cut(s) 159, 254, 453, 755
HphI GGTGA 4 cut(s) 61, 109, 608, 787
Hpy166II GTNNAC 3 cut(s) 18, 508, 1248
Hpy188I TCNGA 4 cut(s) 492, 603, 1061, 1227
Hpy188III TCNNGA 5 cut(s) 56, 244, 858, 936, 1102
Hpy8I GTNNAC 3 cut(s) 18, 508, 1248
HpyAV CCTTC 6 cut(s) 39, 71, 224, 298, 634, 1108
HpyCH4III ACNGT 6 cut(s) 326, 620, 974, 1078, 1145, 1245
HpyF10VI GCNNNNNNNGC 4 cut(s) 187, 191, 326, 875
HpyF3I CTNAG 3 cut(s) 374, 962, 1014
Hsp92I GRCGYC 1 cut(s) 381
Hsp92II CATG 4 cut(s) 427, 869, 994, 1105
KroI GCCGGC 1 cut(s) 158
KroNI GCCGGC 1 cut(s) 160
Kzo9I GATC 3 cut(s) 123, 777, 838
LguI GCTCTTC 2 cut(s) 171, 1032
Lsp1109I GCAGC 5 cut(s) 82, 407, 526, 862, 1221
LweI GCATC 2 cut(s) 475, 1133
MaeI CTAG 2 cut(s) 462, 846
MaeIII GTNAC 3 cut(s) 67, 968, 974
MalI GATC 3 cut(s) 125, 779, 840
MboI GATC 3 cut(s) 123, 777, 838
MboII GAAGA 9 cut(s) 24, 127, 188, 223, 539, 616, 661, 1019, 1219
MhlI GDGCHC 3 cut(s) 279, 350, 362
MluCI AATT 7 cut(s) 688, 694, 939, 997, 1062, 1083, 1163
MlyI GAGTC 2 cut(s) 23, 637
MmeI TCCRAC 2 cut(s) 511, 1039
MroNI GCCGGC 1 cut(s) 158
MroXI GAANNNNTTC 1 cut(s) 665
MseI TTAA 4 cut(s) 521, 692, 831, 1044
MspA1I CMGCKG 1 cut(s) 95
MspI CCGG 4 cut(s) 159, 254, 453, 755
MspR9I CCNGG 4 cut(s) 254, 294, 364, 1239
Mva1269I GAATGC 1 cut(s) 1158
MvaI CCWGG 3 cut(s) 294, 364, 1239
MwoI GCNNNNNNNGC 4 cut(s) 187, 191, 326, 875
NaeI GCCGGC 1 cut(s) 160
NciI CCSGG 1 cut(s) 254
NdeII GATC 3 cut(s) 123, 777, 838
NgoMIV GCCGGC 1 cut(s) 158
NlaIII CATG 4 cut(s) 427, 869, 994, 1105
NlaIV GGNNCC 4 cut(s) 27, 51, 202, 361
NmeAIII GCCGAG 1 cut(s) 198
NmuCI GTSAC 1 cut(s) 67
PagI TCATGA 1 cut(s) 1101
PceI AGGCCT 1 cut(s) 1213
PciSI GCTCTTC 2 cut(s) 171, 1032
PctI GAATGC 1 cut(s) 1158
PdiI GCCGGC 1 cut(s) 160
PdmI GAANNNNTTC 1 cut(s) 665
PfeI GAWTC 3 cut(s) 449, 493, 607
PfoI TCCNGGA 1 cut(s) 252
PkrI GCNGC 9 cut(s) 79, 97, 164, 196, 380, 397, 541, 877, 1236
PleI GAGTC 2 cut(s) 22, 636
PpsI GAGTC 2 cut(s) 22, 636
PpuMI RGGWCCY 1 cut(s) 200
Psp124BI GAGCTC 1 cut(s) 279
Psp5II RGGWCCY 1 cut(s) 200
Psp6I CCWGG 3 cut(s) 292, 362, 1237
PspEI GGTNACC 1 cut(s) 974
PspFI CCCAGC 1 cut(s) 722
PspGI CCWGG 3 cut(s) 292, 362, 1237
PspN4I GGNNCC 4 cut(s) 27, 51, 202, 361
PspPI GGNCC 5 cut(s) 164, 200, 318, 335, 1032
PspPPI RGGWCCY 1 cut(s) 200
PstI CTGCAG 2 cut(s) 187, 274
PstNI CAGNNNCTG 1 cut(s) 875
RsaI GTAC 5 cut(s) 371, 715, 797, 1142, 1249
RsaNI GTAC 5 cut(s) 370, 714, 796, 1141, 1248
SacI GAGCTC 1 cut(s) 279
SapI GCTCTTC 2 cut(s) 171, 1032
SaqAI TTAA 4 cut(s) 521, 692, 831, 1044
SatI GCNGC 9 cut(s) 78, 96, 163, 195, 379, 396, 540, 876, 1235
Sau3AI GATC 3 cut(s) 123, 777, 838
Sau96I GGNCC 5 cut(s) 164, 200, 318, 335, 1032
ScaI AGTACT 1 cut(s) 715
SchI GAGTC 2 cut(s) 23, 637
ScrFI CCNGG 4 cut(s) 254, 294, 364, 1239
SduI GDGCHC 3 cut(s) 279, 350, 362
SetI ASST 9 cut(s) 31, 63, 117, 262, 279, 365, 375, 724, 1043
SfaNI GCATC 2 cut(s) 475, 1133
SfcI CTRYAG 2 cut(s) 183, 270
SinI GGWCC 2 cut(s) 200, 1032
SmiI ATTTAAAT 1 cut(s) 693
SmlI CTYRAG 1 cut(s) 54
SmoI CTYRAG 1 cut(s) 54
Sse9I AATT 7 cut(s) 688, 694, 939, 997, 1062, 1083, 1163
SseBI AGGCCT 1 cut(s) 1213
SspMI CTAG 2 cut(s) 462, 846
SstI GAGCTC 1 cut(s) 279
StuI AGGCCT 1 cut(s) 1213
StyD4I CCNGG 4 cut(s) 252, 292, 362, 1237
StyI CCWWGG 1 cut(s) 461
SwaI ATTTAAAT 1 cut(s) 693
TaaI ACNGT 6 cut(s) 326, 620, 974, 1078, 1145, 1245
TaqI TCGA 1 cut(s) 1219
TaqII GACCGA 1 cut(s) 1020
TasI AATT 7 cut(s) 688, 694, 939, 997, 1062, 1083, 1163
TatI WGTACW 3 cut(s) 713, 1140, 1247
TauI GCSGC 4 cut(s) 80, 165, 197, 381
TfiI GAWTC 3 cut(s) 449, 493, 607
Tru1I TTAA 4 cut(s) 521, 692, 831, 1044
Tru9I TTAA 4 cut(s) 521, 692, 831, 1044
TscAI CASTG 4 cut(s) 192, 274, 933, 1083
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 5 cut(s) 95, 395, 539, 875, 1234
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 4 cut(s) 599, 854, 1090, 1118
TspRI CASTG 4 cut(s) 192, 274, 933, 1083
VpaK11BI GGWCC 2 cut(s) 200, 1032
XapI RAATTY 5 cut(s) 688, 694, 997, 1062, 1163
XmaJI CCTAGG 1 cut(s) 461
XmnI GAANNNNTTC 1 cut(s) 665
XspI CTAG 2 cut(s) 462, 846
ZrmI AGTACT 1 cut(s) 715
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.