Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0011363

Physical Location & Seq

Genomic Coordinates Reverse (-)

553679 .. 555731

Gene Structure 2053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G006500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

ATGCCATCTTCTCCAAAACCACCAATCCGTGAGGATCAGGTTCTTCCCCTCACCACCACAACCACCACCATCTCCTCCACCACCACCACACACAGAAAGAAGCTCACTCTCATCCCTCTCATCTTCCTCATCTACTTTGAAGTTGCCGGTGGCCCTTATGGAGAAGAGCCTGCGGTGCAAGCTGCTGGACCCCTTTTCGCCATTCTCGGGTTCCTCATCTTTCCTTTCATCTGGAGTGTCCCTGAAGCTCTCATCACTGCTGAGCTCTCCACAACCTTCCCCGGCAATGGCGGTTTTGTCATCTGGGCTGAGAGAGCTTTTGGTCCCTTCTGGGGCTCTTTGATGGGTACCTGGAAGTTCCTCAGCGGTGTCATCAACATAGCTGCCTTCCCAGTTCTTTGCGTGGACTATATGGACAAGATAATACCGGCTTTTGGATCGGGATGGCCTCGGTACCTTGCCATCTCTGTTTCAACTCTGTTTCTTTCGTTTATAAACTATACTGGTTTGACTATTGTGGGTTATGCTGCTGTGTTACTTGCTATTGTTTCACTCTCGCCATTTATATTGATGTCTTTGATTGCCATTCCAAAGATTCATCCTCATAGGTGGCTCAGTTTGGGCCAAAAGGATGTGAAGAAAGATTGGAACTTGTTCTTTAACACCCTCTTTTGGAACTTGAACTTTTGGGACAATGTTAGTACTTTAGCCGGAGAAGTAGAGAACCCCCACAAAACTTTTCCGGTGGCTCTTTTCGTTGCGGTGATTTTCACTTGCTTGGCATACTTGTTCCCACTTTTTGCTGTGATTGGTTCTGTCTCTGTGGATCAAACTAGGTGGGGATCCGGATTTCATGCTGAGGCTGCTGAAATAATTGCTGGAAAATGGTTGAAATATTGGATTTTAGTTGGTGCAGCGTTATCAGGAATTGGTCTTTTCGAAGCCCAATTAAGCAGCAGTGCTTACCAAGTTCTTGGCATGGCAGATTTAGGCTTCTTGCCTAAGTTTTTTGCGGTTCGGTCAAAAAGGTTTAATACCCCATGGGTCGGAATTCTGATTTCCACCATGATCACTCTTGCAGTCTCCTACATGACCTTCACAGATATAATTTCATCTGCAAATTTCTTGTATAGTTTGGGCATGCTATTGGAATTTGCATCCTTTATTTGGTTAAGAAGGAAGTTGCCGGCATTGAATAGGCCCTATCGAGTTCCAATGAAGCTGCCAGGTTTGGTGGTCATGTGCTTGATTCCATCTGTGTTTTTGATCTTTGTGATGGCTATTGCTACCAAGACTGTGTATTTGATTAGTGGTGTGATGACTTTGGGTGGCATTGGATGGTATTTTTTGATGAAATTTTGCAAGTCTAAGAAGTTGTTCAAGTTCAGTGTTATTGAAATTGAAGAAGGCCGACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0042802

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

473

Amino Acids

52.42

Weight (kDa)

9.32

Isoelectric Point (pI)

36.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13620
fragaria_vesca	FvH4_3g45240
malus_domestica	MD03G1006800.v1.1 MD11G1010000.v1.1
prunus_persica	Prupe.6G006500_v2.0.a1
pyrus_communis	pycom03g00710 pycom05g24020 pycom11g00630
rosa_chinensis	RchiOBHm_Chr5g0082861
rosa_laevigata	RLG00000036995
rosa_multiflora	Rmu_co8414725.1_g000001 Rmu_sc0001381.1_g000012 Rmu_sc0007172.1_g000003
rosa_roxburghii	Rroxscaffold_1G00001580
rosa_rugosa	Rorug05G0480400
rosa_samantha	Rh5AG530800 Rh5BG557700 Rh5CG580700 Rh5DG566000
rosa_wichuraiana	Rw5G049790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	494
Acc65I	GGTACC	2 cut(s)	347, 453
AccB1I	GGYRCC	2 cut(s)	347, 453
AccIII	TCCGGA	1 cut(s)	845
AciI	CCGC	5 cut(s)	173, 291, 366, 761, 1013
AclWI	GGATC	5 cut(s)	42, 445, 834, 837, 850
AcsI	RAATTY	4 cut(s)	1050, 1120, 1151, 1355
AcuI	CTGAAG	1 cut(s)	264
AfaI	GTAC	3 cut(s)	349, 455, 703
AfiI	CCNNNNNNNGG	7 cut(s)	207, 287, 332, 434, 672, 1046, 1167
AgsI	TTSAA	8 cut(s)	140, 474, 682, 892, 1195, 1381, 1397, 1403
AjnI	CCWGG	2 cut(s)	350, 1225
AluBI	AGCT	7 cut(s)	103, 182, 248, 265, 317, 383, 1222
AluI	AGCT	7 cut(s)	103, 182, 248, 265, 317, 383, 1222
Alw21I	GWGCWC	1 cut(s)	267
Alw26I	GTCTC	2 cut(s)	823, 1087
AlwI	GGATC	5 cut(s)	42, 445, 834, 837, 850
Ama87I	CYCGRG	1 cut(s)	206
Aor13HI	TCCGGA	1 cut(s)	845
AoxI	GGCC	5 cut(s)	151, 446, 622, 1199, 1408
ApeKI	GCWGC	7 cut(s)	182, 383, 527, 863, 914, 954, 1222
ApoI	RAATTY	4 cut(s)	1050, 1120, 1151, 1355
ArsI	GACNNNNNNTTYG	2 cut(s)	1285, 1317
Asp700I	GAANNNNTTC	2 cut(s)	653, 1376
Asp718I	GGTACC	2 cut(s)	347, 453
AspS9I	GGNCC	5 cut(s)	152, 188, 323, 622, 1200
AsuC2I	CCSGG	1 cut(s)	282
AsuHPI	GGTGA	2 cut(s)	43, 775
AsuII	TTCGAA	1 cut(s)	939
AvaI	CYCGRG	1 cut(s)	206
AvaII	GGWCC	2 cut(s)	188, 323
BamHI	GGATCC	1 cut(s)	842
BanI	GGYRCC	2 cut(s)	347, 453
BanII	GRGCYC	2 cut(s)	267, 338
Bbv12I	GWGCWC	1 cut(s)	267
BbvCI	CCTCAGC	2 cut(s)	362, 858
BbvI	GCAGC	7 cut(s)	169, 370, 514, 850, 926, 966, 1209
BccI	CCATC	8 cut(s)	13, 77, 337, 438, 470, 1261, 1270, 1332
BciT130I	CCWGG	2 cut(s)	352, 1227
BclI	TGATCA	1 cut(s)	1068
BcnI	CCSGG	1 cut(s)	282
BcoDI	GTCTC	2 cut(s)	823, 1087
BfaI	CTAG	1 cut(s)	834
BisI	GCNGC	7 cut(s)	183, 384, 528, 864, 915, 955, 1223
BlpI	GCTNAGC	1 cut(s)	261
BlsI	GCNGC	7 cut(s)	184, 385, 529, 865, 916, 956, 1224
BmcAI	AGTACT	1 cut(s)	703
Bme1390I	CCNGG	3 cut(s)	282, 352, 1227
Bme18I	GGWCC	2 cut(s)	188, 323
BmeT110I	CYCGRG	1 cut(s)	206
BmgT120I	GGNCC	5 cut(s)	152, 188, 323, 622, 1200
BmiI	GGNNCC	6 cut(s)	190, 212, 325, 349, 455, 844
BmrFI	CCNGG	3 cut(s)	282, 352, 1227
BmrI	ACTGGG	1 cut(s)	386
BmsI	GCATC	1 cut(s)	1166
BmuI	ACTGGG	1 cut(s)	386
BpmI	CTGGAG	1 cut(s)	253
Bpu10I	CCTNAGC	2 cut(s)	362, 858
Bpu1102I	GCTNAGC	1 cut(s)	261
Bpu14I	TTCGAA	1 cut(s)	939
BpuMI	CCSGG	1 cut(s)	282
BsaJI	CCNNGG	3 cut(s)	280, 449, 1040
BsaWI	WCCGGW	2 cut(s)	742, 845
Bsc4I	CCNNNNNNNGG	7 cut(s)	207, 287, 332, 434, 672, 1046, 1167
Bse118I	RCCGGY	3 cut(s)	146, 427, 1186
Bse1I	ACTGG	2 cut(s)	392, 508
Bse3DI	GCAATG	1 cut(s)	292
BseAI	TCCGGA	1 cut(s)	845
BseBI	CCWGG	2 cut(s)	352, 1227
BseDI	CCNNGG	3 cut(s)	280, 449, 1040
BseGI	GGATG	6 cut(s)	111, 449, 598, 637, 1157, 1343
BseLI	CCNNNNNNNGG	7 cut(s)	207, 287, 332, 434, 672, 1046, 1167
BseMI	GCAATG	1 cut(s)	292
BseMII	CTCAG	5 cut(s)	252, 300, 376, 628, 849
BseNI	ACTGG	2 cut(s)	392, 508
BseRI	GAGGAG	1 cut(s)	64
BseXI	GCAGC	7 cut(s)	169, 370, 514, 850, 926, 966, 1209
BsgI	GTGCAG	1 cut(s)	933
BshFI	GGCC	5 cut(s)	153, 448, 624, 1201, 1410
BshNI	GGYRCC	2 cut(s)	347, 453
BsiHKAI	GWGCWC	1 cut(s)	267
BsiHKCI	CYCGRG	1 cut(s)	206
BsiSI	CCGG	7 cut(s)	147, 282, 428, 711, 743, 846, 1187
BslFI	GGGAC	3 cut(s)	224, 309, 704
BslI	CCNNNNNNNGG	7 cut(s)	207, 287, 332, 434, 672, 1046, 1167
BsmAI	GTCTC	2 cut(s)	823, 1087
BsmFI	GGGAC	3 cut(s)	224, 309, 704
BsnI	GGCC	5 cut(s)	153, 448, 624, 1201, 1410
BsoBI	CYCGRG	1 cut(s)	206
Bsp119I	TTCGAA	1 cut(s)	939
Bsp1286I	GDGCHC	2 cut(s)	267, 338
Bsp13I	TCCGGA	1 cut(s)	845
Bsp143I	GATC	6 cut(s)	34, 437, 826, 842, 1068, 1266
Bsp1720I	GCTNAGC	1 cut(s)	261
Bsp19I	CCATGG	1 cut(s)	1040
BspACI	CCGC	5 cut(s)	173, 291, 366, 761, 1013
BspANI	GGCC	5 cut(s)	153, 448, 624, 1201, 1410
BspCNI	CTCAG	5 cut(s)	253, 301, 375, 627, 850
BspEI	TCCGGA	1 cut(s)	845
BspLI	GGNNCC	6 cut(s)	190, 212, 325, 349, 455, 844
BspPI	GGATC	5 cut(s)	42, 445, 834, 837, 850
BspQI	GCTCTTC	1 cut(s)	159
BspT104I	TTCGAA	1 cut(s)	939
BspT107I	GGYRCC	2 cut(s)	347, 453
BsrDI	GCAATG	1 cut(s)	292
BsrFI	RCCGGY	3 cut(s)	146, 427, 1186
BsrI	ACTGG	2 cut(s)	392, 508
BssAI	RCCGGY	3 cut(s)	146, 427, 1186
BssECI	CCNNGG	3 cut(s)	280, 449, 1040
BssMI	GATC	6 cut(s)	34, 437, 826, 842, 1068, 1266
BssT1I	CCWWGG	1 cut(s)	1040
Bst2UI	CCWGG	2 cut(s)	352, 1227
Bst4CI	ACNGT	1 cut(s)	1297
Bst6I	CTCTTC	1 cut(s)	159
BstBI	TTCGAA	1 cut(s)	939
BstC8I	GCNNGC	4 cut(s)	171, 180, 1142, 1188
BstDEI	CTNAG	7 cut(s)	261, 309, 362, 614, 858, 1002, 1368
BstDSI	CCRYGG	1 cut(s)	1040
BstF5I	GGATG	6 cut(s)	111, 449, 598, 637, 1157, 1343
BstKTI	GATC	6 cut(s)	37, 440, 829, 845, 1071, 1269
BstMAI	GTCTC	2 cut(s)	823, 1087
BstMBI	GATC	6 cut(s)	34, 437, 826, 842, 1068, 1266
BstMWI	GCNNNNNNNGC	4 cut(s)	175, 179, 314, 863
BstNI	CCWGG	2 cut(s)	352, 1227
BstNSI	RCATGY	1 cut(s)	1144
BstSCI	CCNGG	3 cut(s)	280, 350, 1225
BstV1I	GCAGC	7 cut(s)	169, 370, 514, 850, 926, 966, 1209
BstX2I	RGATCY	1 cut(s)	842
BstXI	CCANNNNNNTGG	1 cut(s)	974
BstYI	RGATCY	1 cut(s)	842
BsuRI	GGCC	5 cut(s)	153, 448, 624, 1201, 1410
BtgI	CCRYGG	1 cut(s)	1040
BtsCI	GGATG	6 cut(s)	111, 449, 598, 637, 1157, 1343
BtsI	GCAGTG	2 cut(s)	255, 964
BtsIMutI	CAGTG	3 cut(s)	255, 964, 1393
Cac8I	GCNNGC	4 cut(s)	171, 180, 1142, 1188
Cfr10I	RCCGGY	3 cut(s)	146, 427, 1186
Cfr13I	GGNCC	5 cut(s)	152, 188, 323, 622, 1200
Csp6I	GTAC	3 cut(s)	348, 454, 702
CspCI	CAANNNNNGTGG	2 cut(s)	818, 853
CviAII	CATG	7 cut(s)	854, 979, 1041, 1066, 1090, 1141, 1240
CviQI	GTAC	3 cut(s)	348, 454, 702
DdeI	CTNAG	7 cut(s)	261, 309, 362, 614, 858, 1002, 1368
DpnI	GATC	6 cut(s)	36, 439, 828, 844, 1070, 1268
DpnII	GATC	6 cut(s)	34, 437, 826, 842, 1068, 1266
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Ecl136II	GAGCTC	1 cut(s)	265
Eco130I	CCWWGG	1 cut(s)	1040
Eco24I	GRGCYC	2 cut(s)	267, 338
Eco47I	GGWCC	2 cut(s)	188, 323
Eco53kI	GAGCTC	1 cut(s)	265
Eco57I	CTGAAG	1 cut(s)	264
Eco88I	CYCGRG	1 cut(s)	206
EcoICRI	GAGCTC	1 cut(s)	265
EcoO109I	RGGNCCY	1 cut(s)	1200
EcoRI	GAATTC	1 cut(s)	1050
EcoRII	CCWGG	2 cut(s)	350, 1225
EcoT14I	CCWWGG	1 cut(s)	1040
EcoT38I	GRGCYC	2 cut(s)	267, 338
ErhI	CCWWGG	1 cut(s)	1040
FaeI	CATG	7 cut(s)	857, 982, 1044, 1069, 1093, 1144, 1243
FaqI	GGGAC	3 cut(s)	224, 309, 704
FatI	CATG	7 cut(s)	853, 978, 1040, 1065, 1089, 1140, 1239
FbaI	TGATCA	1 cut(s)	1068
Fnu4HI	GCNGC	7 cut(s)	183, 384, 528, 864, 915, 955, 1223
FokI	GGATG	6 cut(s)	98, 456, 585, 644, 1144, 1350
FriOI	GRGCYC	2 cut(s)	267, 338
Fsp4HI	GCNGC	7 cut(s)	183, 384, 528, 864, 915, 955, 1223
FspBI	CTAG	1 cut(s)	834
GluI	GCNGC	7 cut(s)	183, 384, 528, 864, 915, 955, 1223
GsuI	CTGGAG	1 cut(s)	253
HaeIII	GGCC	5 cut(s)	153, 448, 624, 1201, 1410
HapII	CCGG	7 cut(s)	147, 282, 428, 711, 743, 846, 1187
Hin1II	CATG	7 cut(s)	857, 982, 1044, 1069, 1093, 1144, 1243
HinfI	GANTC	2 cut(s)	595, 1249
HpaII	CCGG	7 cut(s)	147, 282, 428, 711, 743, 846, 1187
HphI	GGTGA	2 cut(s)	43, 775
Hpy166II	GTNNAC	1 cut(s)	406
Hpy188I	TCNGA	2 cut(s)	1049, 1056
Hpy188III	TCNNGA	4 cut(s)	232, 441, 846, 924
Hpy8I	GTNNAC	1 cut(s)	406
HpyAV	CCTTC	6 cut(s)	286, 337, 397, 1105, 1170, 1400
HpyCH4III	ACNGT	1 cut(s)	1297
HpyCH4V	TGCA	6 cut(s)	178, 914, 1079, 1118, 1157, 1362
HpyF10VI	GCNNNNNNNGC	4 cut(s)	175, 179, 314, 863
HpyF3I	CTNAG	7 cut(s)	261, 309, 362, 614, 858, 1002, 1368
Hsp92II	CATG	7 cut(s)	857, 982, 1044, 1069, 1093, 1144, 1243
Kpn2I	TCCGGA	1 cut(s)	845
KpnI	GGTACC	2 cut(s)	351, 457
KroI	GCCGGC	1 cut(s)	1186
KroNI	GCCGGC	1 cut(s)	1188
Ksp22I	TGATCA	1 cut(s)	1068
Kzo9I	GATC	6 cut(s)	34, 437, 826, 842, 1068, 1266
LguI	GCTCTTC	1 cut(s)	159
Lsp1109I	GCAGC	7 cut(s)	169, 370, 514, 850, 926, 966, 1209
LweI	GCATC	1 cut(s)	1166
MaeI	CTAG	1 cut(s)	834
MaeIII	GTNAC	1 cut(s)	534
MalI	GATC	6 cut(s)	36, 439, 828, 844, 1070, 1268
MboI	GATC	6 cut(s)	34, 437, 826, 842, 1068, 1266
MboII	GAAGA	5 cut(s)	35, 115, 176, 649, 1415
MflI	RGATCY	1 cut(s)	842
MhlI	GDGCHC	2 cut(s)	267, 338
MluCI	AATT	9 cut(s)	873, 927, 947, 1050, 1107, 1120, 1151, 1355, 1398
MmeI	TCCRAC	1 cut(s)	1027
MroI	TCCGGA	1 cut(s)	845
MroNI	GCCGGC	1 cut(s)	1186
MroXI	GAANNNNTTC	2 cut(s)	653, 1376
MseI	TTAA	4 cut(s)	660, 950, 1032, 1172
MspA1I	CMGCKG	1 cut(s)	366
MspI	CCGG	7 cut(s)	147, 282, 428, 711, 743, 846, 1187
MspR9I	CCNGG	3 cut(s)	282, 352, 1227
MvaI	CCWGG	2 cut(s)	352, 1227
MwoI	GCNNNNNNNGC	4 cut(s)	175, 179, 314, 863
NaeI	GCCGGC	1 cut(s)	1188
NciI	CCSGG	1 cut(s)	282
NcoI	CCATGG	1 cut(s)	1040
NdeII	GATC	6 cut(s)	34, 437, 826, 842, 1068, 1266
NgoMIV	GCCGGC	1 cut(s)	1186
NlaIII	CATG	7 cut(s)	857, 982, 1044, 1069, 1093, 1144, 1243
NlaIV	GGNNCC	6 cut(s)	190, 212, 325, 349, 455, 844
NspI	RCATGY	1 cut(s)	1144
NspV	TTCGAA	1 cut(s)	939
PaeI	GCATGC	1 cut(s)	1144
PciSI	GCTCTTC	1 cut(s)	159
PdiI	GCCGGC	1 cut(s)	1188
PdmI	GAANNNNTTC	2 cut(s)	653, 1376
PfeI	GAWTC	2 cut(s)	595, 1249
PkrI	GCNGC	7 cut(s)	184, 385, 529, 865, 916, 956, 1224
PsiI	TTATAA	1 cut(s)	494
Psp124BI	GAGCTC	1 cut(s)	267
Psp6I	CCWGG	2 cut(s)	350, 1225
PspGI	CCWGG	2 cut(s)	350, 1225
PspN4I	GGNNCC	6 cut(s)	190, 212, 325, 349, 455, 844
PspPI	GGNCC	5 cut(s)	152, 188, 323, 622, 1200
PsuI	RGATCY	1 cut(s)	842
RsaI	GTAC	3 cut(s)	349, 455, 703
RsaNI	GTAC	3 cut(s)	348, 454, 702
SacI	GAGCTC	1 cut(s)	267
SapI	GCTCTTC	1 cut(s)	159
SaqAI	TTAA	4 cut(s)	660, 950, 1032, 1172
SatI	GCNGC	7 cut(s)	183, 384, 528, 864, 915, 955, 1223
Sau3AI	GATC	6 cut(s)	34, 437, 826, 842, 1068, 1266
Sau96I	GGNCC	5 cut(s)	152, 188, 323, 622, 1200
ScaI	AGTACT	1 cut(s)	703
ScrFI	CCNGG	3 cut(s)	282, 352, 1227
SduI	GDGCHC	2 cut(s)	267, 338
SfaNI	GCATC	1 cut(s)	1166
SfuI	TTCGAA	1 cut(s)	939
SinI	GGWCC	2 cut(s)	188, 323
SphI	GCATGC	1 cut(s)	1144
Sse9I	AATT	9 cut(s)	873, 927, 947, 1050, 1107, 1120, 1151, 1355, 1398
SsiI	CCGC	5 cut(s)	173, 291, 366, 761, 1013
SspI	AATATT	1 cut(s)	896
SspMI	CTAG	1 cut(s)	834
SstI	GAGCTC	1 cut(s)	267
StyD4I	CCNGG	3 cut(s)	280, 350, 1225
StyI	CCWWGG	1 cut(s)	1040
TaaI	ACNGT	1 cut(s)	1297
TaqI	TCGA	2 cut(s)	939, 1207
TaqII	GACCGA	1 cut(s)	1008
TasI	AATT	9 cut(s)	873, 927, 947, 1050, 1107, 1120, 1151, 1355, 1398
TatI	WGTACW	1 cut(s)	701
TfiI	GAWTC	2 cut(s)	595, 1249
Tru1I	TTAA	4 cut(s)	660, 950, 1032, 1172
Tru9I	TTAA	4 cut(s)	660, 950, 1032, 1172
TscAI	CASTG	3 cut(s)	262, 964, 1393
TseI	GCWGC	7 cut(s)	182, 383, 527, 863, 914, 954, 1222
TspDTI	ATGAA	6 cut(s)	217, 587, 842, 1101, 1232, 1367
TspGWI	ACGGA	1 cut(s)	17
TspRI	CASTG	3 cut(s)	262, 964, 1393
VpaK11BI	GGWCC	2 cut(s)	188, 323
XapI	RAATTY	4 cut(s)	1050, 1120, 1151, 1355
XceI	RCATGY	1 cut(s)	1144
XmnI	GAANNNNTTC	2 cut(s)	653, 1376
XspI	CTAG	1 cut(s)	834
ZrmI	AGTACT	1 cut(s)	703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.