Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8414725.1

Orthogroup ID

OG0011363

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1336

Gene Structure 1336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8414725.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1336 bp

tccaaacccaaagaagctcactctcatccctctcattttcctcatctacttcgaagtcgccggcggcccgtatggcgaagagccagcagttcaagccgccggcccccttctcgccattctcggcttcctcatcttccctttcatctggagtgtccccgaggctctcatcaccgccgagctctccaccaccttccccggcaacggcggctttgtcatctgggccgaccgggctttcgggcctttctggggatcactaatgggcacctggaagttcctcagcggcgtcatcaacattgctgcattcccagttctatgtatagattacatggagaaggtaatccctgctcttgaatcagggtggcctaggtaccttgctgtgggtgtttcaactctgtttctttcgtttctcaactttactggcttagctattgtgggatacgttgctgtggttcttggtcttgtttcgctttcgccttttatagtcatgtctttgatcgccataccgaagattaaaccccataggtggttgagtttggggcagaagggtgtgaagaaagattggaacttgttcttcaacaccctgttttggaacttgaacttttgggataatgttagtactttggcaggagaagtagaaaagcctcggaaaacttttcccaaggctctttttgtggctgtcatattcacttgcatggcctatttggtccctcttttcgctgtcattggatcggtcaatgtggatcagaggaaatgggaatccgggtttcatgctgaggctgctgaaatcattgctggcaagtggttgaagtattggattgaagttggtgctgtgttgtctggtattggtctttttgaagctcaactaagcagcagtgcttaccaagttcttggtatggcagacataggattcttgcctaggtttttcgcggttcgatccaagaggtttgataccccatgggttggaattttgatttccacactgatcactcttggagtttcctacatgaattttacagatataatttcatctgcaaatttcttgtatagtttgggaatgttattggagtttgcgtctttcatttggttgaggaggaagatgccaacattgaagaggccttatcgagttccgatgaagctgccaggtttggtgatcatgtgtttgattccatctgggtttttgatttttgtgatggctattgctaccaagacggtgtatttggttagtgctataatgagcgtggctggaattggatggttctttttgatgaaatattgcaaggcaaagaagttgttcaagttcagtgctattgaaattgaagatattgaagaagaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0042802

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

444

Amino Acids

49.43

Weight (kDa)

9.16

Isoelectric Point (pI)

34.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13620
fragaria_vesca	FvH4_3g45240
malus_domestica	MD03G1006800.v1.1 MD11G1010000.v1.1
prunus_persica	Prupe.6G006500_v2.0.a1
pyrus_communis	pycom03g00710 pycom05g24020 pycom11g00630
rosa_chinensis	RchiOBHm_Chr5g0082861
rosa_laevigata	RLG00000036995
rosa_multiflora	Rmu_co8414725.1_g000001 Rmu_sc0001381.1_g000012 Rmu_sc0007172.1_g000003
rosa_roxburghii	Rroxscaffold_1G00001580
rosa_rugosa	Rorug05G0480400
rosa_samantha	Rh5AG530800 Rh5BG557700 Rh5CG580700 Rh5DG566000
rosa_wichuraiana	Rw5G049790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	367
AccB1I	GGYRCC	2 cut(s)	261, 367
AccB7I	CCANNNNNTGG	1 cut(s)	960
AccII	CGCG	1 cut(s)	927
AciI	CCGC	6 cut(s)	64, 97, 172, 205, 280, 927
AclWI	GGATC	4 cut(s)	257, 734, 748, 928
AcsI	RAATTY	3 cut(s)	964, 1007, 1034
AcyI	GRCGYC	1 cut(s)	283
AfaI	GTAC	2 cut(s)	369, 617
AfiI	CCNNNNNNNGG	6 cut(s)	201, 246, 377, 523, 586, 960
AjnI	CCWGG	2 cut(s)	264, 1139
AluBI	AGCT	5 cut(s)	17, 179, 426, 858, 1136
AluI	AGCT	5 cut(s)	17, 179, 426, 858, 1136
Alw21I	GWGCWC	1 cut(s)	181
AlwI	GGATC	4 cut(s)	257, 734, 748, 928
Ama87I	CYCGRG	1 cut(s)	156
AoxI	GGCC	7 cut(s)	65, 101, 220, 237, 360, 694, 1113
ApeKI	GCWGC	4 cut(s)	297, 777, 868, 1136
ApoI	RAATTY	3 cut(s)	964, 1007, 1034
ArsI	GACNNNNNNTTYG	4 cut(s)	216, 248, 1199, 1231
Asp700I	GAANNNNTTC	2 cut(s)	567, 1290
Asp718I	GGTACC	1 cut(s)	367
AspA2I	CCTAGG	2 cut(s)	363, 915
AspS9I	GGNCC	5 cut(s)	66, 102, 220, 237, 704
AsuC2I	CCSGG	3 cut(s)	196, 228, 761
AsuHPI	GGTGA	2 cut(s)	161, 1160
AsuII	TTCGAA	1 cut(s)	52
AvaI	CYCGRG	1 cut(s)	156
AvaII	GGWCC	1 cut(s)	704
AvrII	CCTAGG	2 cut(s)	363, 915
BaeGI	GKGCMC	1 cut(s)	264
BanI	GGYRCC	2 cut(s)	261, 367
BanII	GRGCYC	1 cut(s)	181
Bbv12I	GWGCWC	1 cut(s)	181
BbvCI	CCTCAGC	2 cut(s)	276, 772
BbvI	GCAGC	4 cut(s)	284, 764, 880, 1123
BccI	CCATC	3 cut(s)	1175, 1184, 1246
BceAI	ACGGC	1 cut(s)	218
BcgI	CGANNNNNNTGC	2 cut(s)	1118, 1152
BciT130I	CCWGG	2 cut(s)	266, 1141
BciVI	GTATCC	1 cut(s)	429
BclI	TGATCA	2 cut(s)	982, 1150
BcnI	CCSGG	3 cut(s)	196, 228, 761
BfaI	CTAG	2 cut(s)	364, 916
BfuI	GTATCC	1 cut(s)	429
BglI	GCCNNNNNGGC	2 cut(s)	73, 228
BisI	GCNGC	8 cut(s)	65, 97, 206, 281, 298, 778, 869, 1137
BlnI	CCTAGG	2 cut(s)	363, 915
BlpI	GCTNAGC	1 cut(s)	422
BlsI	GCNGC	8 cut(s)	66, 98, 207, 282, 299, 779, 870, 1138
BmcAI	AGTACT	1 cut(s)	617
Bme1390I	CCNGG	5 cut(s)	196, 228, 266, 761, 1141
Bme18I	GGWCC	1 cut(s)	704
BmeT110I	CYCGRG	1 cut(s)	156
BmgT120I	GGNCC	5 cut(s)	66, 102, 220, 237, 704
BmiI	GGNNCC	4 cut(s)	104, 263, 369, 706
BmrFI	CCNGG	5 cut(s)	196, 228, 266, 761, 1141
BmrI	ACTGGG	1 cut(s)	300
BmsI	GCATC	1 cut(s)	1087
BmuI	ACTGGG	1 cut(s)	300
BpmI	CTGGAG	1 cut(s)	167
Bpu10I	CCTNAGC	2 cut(s)	276, 772
Bpu1102I	GCTNAGC	1 cut(s)	422
Bpu14I	TTCGAA	1 cut(s)	52
BpuMI	CCSGG	3 cut(s)	196, 228, 761
BsaHI	GRCGYC	1 cut(s)	283
BsaJI	CCNNGG	7 cut(s)	157, 194, 363, 642, 658, 915, 954
BsaXI	ACNNNNNCTCC	2 cut(s)	1056, 1086
Bsc4I	CCNNNNNNNGG	6 cut(s)	201, 246, 377, 523, 586, 960
Bse118I	RCCGGY	2 cut(s)	60, 99
Bse1I	ACTGG	2 cut(s)	306, 422
Bse3DI	GCAATG	2 cut(s)	292, 787
BseBI	CCWGG	2 cut(s)	266, 1141
BseDI	CCNNGG	7 cut(s)	157, 194, 363, 642, 658, 915, 954
BseGI	GGATG	2 cut(s)	25, 1257
BseLI	CCNNNNNNNGG	6 cut(s)	201, 246, 377, 523, 586, 960
BseMI	GCAATG	2 cut(s)	292, 787
BseMII	CTCAG	2 cut(s)	290, 763
BseNI	ACTGG	2 cut(s)	306, 422
BseRI	GAGGAG	1 cut(s)	1103
BseSI	GKGCMC	1 cut(s)	264
BseXI	GCAGC	4 cut(s)	284, 764, 880, 1123
Bsh1236I	CGCG	1 cut(s)	927
Bsh1285I	CGRYCG	1 cut(s)	227
BshFI	GGCC	7 cut(s)	67, 103, 222, 239, 362, 696, 1115
BshNI	GGYRCC	2 cut(s)	261, 367
BsiEI	CGRYCG	1 cut(s)	227
BsiHKAI	GWGCWC	1 cut(s)	181
BsiHKCI	CYCGRG	1 cut(s)	156
BsiSI	CCGG	5 cut(s)	61, 100, 196, 227, 760
BslFI	GGGAC	2 cut(s)	138, 690
BslI	CCNNNNNNNGG	6 cut(s)	201, 246, 377, 523, 586, 960
BsmFI	GGGAC	2 cut(s)	138, 690
BsmI	GAATGC	1 cut(s)	300
BsnI	GGCC	7 cut(s)	67, 103, 222, 239, 362, 696, 1115
BsoBI	CYCGRG	1 cut(s)	156
Bsp119I	TTCGAA	1 cut(s)	52
Bsp1286I	GDGCHC	2 cut(s)	181, 264
Bsp143I	GATC	7 cut(s)	249, 493, 726, 740, 933, 982, 1150
Bsp1720I	GCTNAGC	1 cut(s)	422
Bsp19I	CCATGG	1 cut(s)	954
BspACI	CCGC	6 cut(s)	64, 97, 172, 205, 280, 927
BspANI	GGCC	7 cut(s)	67, 103, 222, 239, 362, 696, 1115
BspCNI	CTCAG	2 cut(s)	289, 764
BspFNI	CGCG	1 cut(s)	927
BspLI	GGNNCC	4 cut(s)	104, 263, 369, 706
BspPI	GGATC	4 cut(s)	257, 734, 748, 928
BspQI	GCTCTTC	1 cut(s)	73
BspT104I	TTCGAA	1 cut(s)	52
BspT107I	GGYRCC	2 cut(s)	261, 367
BsrDI	GCAATG	2 cut(s)	292, 787
BsrFI	RCCGGY	2 cut(s)	60, 99
BsrI	ACTGG	2 cut(s)	306, 422
BssAI	RCCGGY	2 cut(s)	60, 99
BssECI	CCNNGG	7 cut(s)	157, 194, 363, 642, 658, 915, 954
BssMI	GATC	7 cut(s)	249, 493, 726, 740, 933, 982, 1150
BssNI	GRCGYC	1 cut(s)	283
BssT1I	CCWWGG	4 cut(s)	363, 658, 915, 954
Bst2UI	CCWGG	2 cut(s)	266, 1141
Bst4CI	ACNGT	1 cut(s)	1211
Bst6I	CTCTTC	2 cut(s)	73, 1104
BstACI	GRCGYC	1 cut(s)	283
BstBI	TTCGAA	1 cut(s)	52
BstC8I	GCNNGC	4 cut(s)	62, 85, 101, 794
BstDEI	CTNAG	4 cut(s)	276, 422, 772, 864
BstDSI	CCRYGG	1 cut(s)	954
BstF5I	GGATG	2 cut(s)	25, 1257
BstFNI	CGCG	1 cut(s)	927
BstKTI	GATC	7 cut(s)	252, 496, 729, 743, 936, 985, 1153
BstMBI	GATC	7 cut(s)	249, 493, 726, 740, 933, 982, 1150
BstMCI	CGRYCG	1 cut(s)	227
BstMWI	GCNNNNNNNGC	5 cut(s)	73, 93, 205, 228, 777
BstNI	CCWGG	2 cut(s)	266, 1141
BstSCI	CCNGG	5 cut(s)	194, 226, 264, 759, 1139
BstSLI	GKGCMC	1 cut(s)	264
BstUI	CGCG	1 cut(s)	927
BstV1I	GCAGC	4 cut(s)	284, 764, 880, 1123
BstXI	CCANNNNNNTGG	1 cut(s)	888
BsuI	GTATCC	1 cut(s)	429
BsuRI	GGCC	7 cut(s)	67, 103, 222, 239, 362, 696, 1115
BtgI	CCRYGG	1 cut(s)	954
BtsCI	GGATG	2 cut(s)	25, 1257
BtsI	GCAGTG	1 cut(s)	878
BtsIMutI	CAGTG	3 cut(s)	878, 978, 1307
Cac8I	GCNNGC	4 cut(s)	62, 85, 101, 794
Cfr10I	RCCGGY	2 cut(s)	60, 99
Cfr13I	GGNCC	5 cut(s)	66, 102, 220, 237, 704
CseI	GACGC	2 cut(s)	272, 1060
Csp6I	GTAC	2 cut(s)	368, 616
CviAII	CATG	7 cut(s)	326, 485, 692, 768, 955, 1004, 1154
CviQI	GTAC	2 cut(s)	368, 616
DdeI	CTNAG	4 cut(s)	276, 422, 772, 864
DpnI	GATC	7 cut(s)	251, 495, 728, 742, 935, 984, 1152
DpnII	GATC	7 cut(s)	249, 493, 726, 740, 933, 982, 1150
Eam1104I	CTCTTC	2 cut(s)	73, 1104
EarI	CTCTTC	2 cut(s)	73, 1104
Ecl136II	GAGCTC	1 cut(s)	179
Eco130I	CCWWGG	4 cut(s)	363, 658, 915, 954
Eco147I	AGGCCT	1 cut(s)	1115
Eco24I	GRGCYC	1 cut(s)	181
Eco47I	GGWCC	1 cut(s)	704
Eco53kI	GAGCTC	1 cut(s)	179
Eco88I	CYCGRG	1 cut(s)	156
EcoICRI	GAGCTC	1 cut(s)	179
EcoRII	CCWGG	2 cut(s)	264, 1139
EcoT14I	CCWWGG	4 cut(s)	363, 658, 915, 954
EcoT38I	GRGCYC	1 cut(s)	181
ErhI	CCWWGG	4 cut(s)	363, 658, 915, 954
FaeI	CATG	7 cut(s)	329, 488, 695, 771, 958, 1007, 1157
FaqI	GGGAC	2 cut(s)	138, 690
FatI	CATG	7 cut(s)	325, 484, 691, 767, 954, 1003, 1153
FbaI	TGATCA	2 cut(s)	982, 1150
Fnu4HI	GCNGC	8 cut(s)	65, 97, 206, 281, 298, 778, 869, 1137
FokI	GGATG	2 cut(s)	12, 1264
FriOI	GRGCYC	1 cut(s)	181
Fsp4HI	GCNGC	8 cut(s)	65, 97, 206, 281, 298, 778, 869, 1137
FspBI	CTAG	2 cut(s)	364, 916
GluI	GCNGC	8 cut(s)	65, 97, 206, 281, 298, 778, 869, 1137
GsuI	CTGGAG	1 cut(s)	167
HaeIII	GGCC	7 cut(s)	67, 103, 222, 239, 362, 696, 1115
HapII	CCGG	5 cut(s)	61, 100, 196, 227, 760
HgaI	GACGC	2 cut(s)	272, 1060
Hin1I	GRCGYC	1 cut(s)	283
Hin1II	CATG	7 cut(s)	329, 488, 695, 771, 958, 1007, 1157
HinfI	GANTC	4 cut(s)	351, 756, 907, 1163
HpaII	CCGG	5 cut(s)	61, 100, 196, 227, 760
HphI	GGTGA	2 cut(s)	161, 1160
Hpy188I	TCNGA	3 cut(s)	646, 745, 1129
Hpy188III	TCNNGA	2 cut(s)	146, 348
HpyAV	CCTTC	4 cut(s)	117, 200, 326, 536
HpyCH4III	ACNGT	1 cut(s)	1211
HpyCH4IV	ACGT	1 cut(s)	439
HpyCH4V	TGCA	4 cut(s)	300, 691, 1032, 1276
HpyF10VI	GCNNNNNNNGC	5 cut(s)	73, 93, 205, 228, 777
HpyF3I	CTNAG	4 cut(s)	276, 422, 772, 864
HpySE526I	ACGT	1 cut(s)	439
Hsp92I	GRCGYC	1 cut(s)	283
Hsp92II	CATG	7 cut(s)	329, 488, 695, 771, 958, 1007, 1157
KpnI	GGTACC	1 cut(s)	371
KroI	GCCGGC	2 cut(s)	60, 99
KroNI	GCCGGC	2 cut(s)	62, 101
Ksp22I	TGATCA	2 cut(s)	982, 1150
Kzo9I	GATC	7 cut(s)	249, 493, 726, 740, 933, 982, 1150
LguI	GCTCTTC	1 cut(s)	73
Lsp1109I	GCAGC	4 cut(s)	284, 764, 880, 1123
LweI	GCATC	1 cut(s)	1087
MaeI	CTAG	2 cut(s)	364, 916
MaeII	ACGT	1 cut(s)	439
MalI	GATC	7 cut(s)	251, 495, 728, 742, 935, 984, 1152
MboI	GATC	7 cut(s)	249, 493, 726, 740, 933, 982, 1150
MboII	GAAGA	8 cut(s)	90, 125, 518, 563, 563, 1106, 1121, 1329
MhlI	GDGCHC	2 cut(s)	181, 264
MluCI	AATT	6 cut(s)	964, 1007, 1021, 1034, 1246, 1312
MmeI	TCCRAC	1 cut(s)	941
MreI	CGCCGGCG	1 cut(s)	60
MroNI	GCCGGC	2 cut(s)	60, 99
MroXI	GAANNNNTTC	2 cut(s)	567, 1290
MseI	TTAA	1 cut(s)	511
MslI	CAYNNNNRTG	1 cut(s)	690
MspA1I	CMGCKG	1 cut(s)	280
MspI	CCGG	5 cut(s)	61, 100, 196, 227, 760
MspR9I	CCNGG	5 cut(s)	196, 228, 266, 761, 1141
Mva1269I	GAATGC	1 cut(s)	300
MvaI	CCWGG	2 cut(s)	266, 1141
MvnI	CGCG	1 cut(s)	927
MwoI	GCNNNNNNNGC	5 cut(s)	73, 93, 205, 228, 777
NaeI	GCCGGC	2 cut(s)	62, 101
NciI	CCSGG	3 cut(s)	196, 228, 761
NcoI	CCATGG	1 cut(s)	954
NdeII	GATC	7 cut(s)	249, 493, 726, 740, 933, 982, 1150
NgoMIV	GCCGGC	2 cut(s)	60, 99
NlaIII	CATG	7 cut(s)	329, 488, 695, 771, 958, 1007, 1157
NlaIV	GGNNCC	4 cut(s)	104, 263, 369, 706
NmeAIII	GCCGAG	2 cut(s)	100, 200
NspV	TTCGAA	1 cut(s)	52
PceI	AGGCCT	1 cut(s)	1115
PciSI	GCTCTTC	1 cut(s)	73
PctI	GAATGC	1 cut(s)	300
PdiI	GCCGGC	2 cut(s)	62, 101
PdmI	GAANNNNTTC	2 cut(s)	567, 1290
PfeI	GAWTC	4 cut(s)	351, 756, 907, 1163
PflMI	CCANNNNNTGG	1 cut(s)	960
PkrI	GCNGC	8 cut(s)	66, 98, 207, 282, 299, 779, 870, 1138
Psp124BI	GAGCTC	1 cut(s)	181
Psp6I	CCWGG	2 cut(s)	264, 1139
PspGI	CCWGG	2 cut(s)	264, 1139
PspN4I	GGNNCC	4 cut(s)	104, 263, 369, 706
PspPI	GGNCC	5 cut(s)	66, 102, 220, 237, 704
RsaI	GTAC	2 cut(s)	369, 617
RsaNI	GTAC	2 cut(s)	368, 616
RseI	CAYNNNNRTG	1 cut(s)	690
SacI	GAGCTC	1 cut(s)	181
SapI	GCTCTTC	1 cut(s)	73
SaqAI	TTAA	1 cut(s)	511
SatI	GCNGC	8 cut(s)	65, 97, 206, 281, 298, 778, 869, 1137
Sau3AI	GATC	7 cut(s)	249, 493, 726, 740, 933, 982, 1150
Sau96I	GGNCC	5 cut(s)	66, 102, 220, 237, 704
ScaI	AGTACT	1 cut(s)	617
ScrFI	CCNGG	5 cut(s)	196, 228, 266, 761, 1141
SduI	GDGCHC	2 cut(s)	181, 264
SfaNI	GCATC	1 cut(s)	1087
SfuI	TTCGAA	1 cut(s)	52
SgrAI	CRCCGGYG	1 cut(s)	60
SinI	GGWCC	1 cut(s)	704
SmiMI	CAYNNNNRTG	1 cut(s)	690
Sse9I	AATT	6 cut(s)	964, 1007, 1021, 1034, 1246, 1312
SseBI	AGGCCT	1 cut(s)	1115
SsiI	CCGC	6 cut(s)	64, 97, 172, 205, 280, 927
SspI	AATATT	1 cut(s)	1272
SspMI	CTAG	2 cut(s)	364, 916
SstI	GAGCTC	1 cut(s)	181
StuI	AGGCCT	1 cut(s)	1115
StyD4I	CCNGG	5 cut(s)	194, 226, 264, 759, 1139
StyI	CCWWGG	4 cut(s)	363, 658, 915, 954
TaaI	ACNGT	1 cut(s)	1211
TaiI	ACGT	1 cut(s)	442
TaqI	TCGA	3 cut(s)	52, 932, 1121
TaqII	GACCGA	1 cut(s)	719
TasI	AATT	6 cut(s)	964, 1007, 1021, 1034, 1246, 1312
TatI	WGTACW	1 cut(s)	615
TauI	GCSGC	4 cut(s)	67, 99, 208, 283
TfiI	GAWTC	4 cut(s)	351, 756, 907, 1163
Tru1I	TTAA	1 cut(s)	511
Tru9I	TTAA	1 cut(s)	511
TscAI	CASTG	3 cut(s)	878, 985, 1307
TseI	GCWGC	4 cut(s)	297, 777, 868, 1136
TspDTI	ATGAA	7 cut(s)	131, 756, 1015, 1020, 1067, 1146, 1281
TspRI	CASTG	3 cut(s)	878, 985, 1307
Van91I	CCANNNNNTGG	1 cut(s)	960
VpaK11BI	GGWCC	1 cut(s)	704
XapI	RAATTY	3 cut(s)	964, 1007, 1034
XmaJI	CCTAGG	2 cut(s)	363, 915
XmnI	GAANNNNTTC	2 cut(s)	567, 1290
XspI	CTAG	2 cut(s)	364, 916
ZrmI	AGTACT	1 cut(s)	617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.