RchiOBHm_Chr5g0082861

polyamine transporter At3g13620

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
88697563 .. 88699438
1876 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35704

Sequence Viewer

Length: 1395 bp
ATGGAATCTCCTCCAAAACCACTTCCAGACCTCCCGATCACCACCACCACAACCACCACTCCAAACCCAAAGAAGCTCACTCTCATCCCTCTCATTTTCCTCATCTACTTCGAAGTCGCCGGCGGCCCGTATGGCGAAGAGCCAGCAGTTCAAGCCGCCGGCCCCCTTCTCGCCATTCTCGGCTTCCTCATCTTCCCTTTCATCTGGAGTGTCCCCGAGGCTCTCATCACCGCCGAGCTCTCCACCACCTTCCCCGGCAACGGCGGCTTTGTCATCTGGGCCGACCGGGCTTTCGGGCCTTTCTGGGGATCACTAATGGGCACCTGGAAGTTCCTCAGCGGCGTCATCAACATTGCTGCATTCCCAGTTCTATGTATAGATTACATGGAGAAGGTAATCCCTGCTCTTGAATCAGGGTGGCCTAGGTACCTTGCTGTGGGTGTTTCAACTCTGTTTCTTTCGTTTCTCAACTTTACTGGCTTAGCTATTGTGGGATATGTTGCTGTTGTTCTTGGTCTTGTTTCGCTTTCGCCTTTTATAGTCATGTCTTTGATCGCCATACCGAAGATTAAACCCCATAGGTGGTTGAGTTTGGGGCAGAAGGGTGTGAAGAAAGATTGGAACTTGTTCTTCAACACCCTGTTTTGGAACTTAAACTTTTGGGATAATGTTAGTACTTTGGCAGGAGAAGTAGAAAAGCCTCGGAAAACTTTTCCCAAGGCTCTTTTTGTGGCTGTCATATTCACTTGCATGGCTTATTTGGTCCCTCTTTTCGCTGTCATTGGATCGGTCAATGTGGATCAGAGGAAATGGGAATCCGGGTTTCATGCTGAGGCTGCTGAAATCATTGCTGGCAAGTGGTTGAAGTACTGGATTGAAGTTGGTGCTGTGTTGTCTGGTATTGGTCTTTTTGAAGCTCAACTAAGCAGCAGTGCTTACCAAGTTCTTGGTATGGCAGACATAGGATTCTTGCCTAGGTTTTTCGCGGTTCGATCCAAGAGGTTTGATACCCCATGGGTTGGAATTTTGATTTCCACACTGATCACTCTTGGAGTTTCCTACATGAATTTTACAGATATAATTTCATCTGCAAATTTCTTGTATAGTTTGGGAATGTTATTGGAGTTTGCGTCTTTCATTTGGTTGAGGAGGAAGATGCCAACATTGAAGAGGCCTTATCGAGTTCCGATGAAGCTGCCAGGTTTGGTGATCATGTGTTTGATTCCATCTGGGTTTTTGATTTTTGTGATGGCTATTGCTACCAAGACGGTGTATTTGGTTAGTGCTATAATGAGCGTGGCTGGAATTGGATGGTTCTTTTTGATGAAATATTGCAAGGCAAAGAAGTTGTTCAAGTTCAGTGCTATTGAAATTGAAGATATTGAAGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

464

Amino Acids

51.55

Weight (kDa)

9.05

Isoelectric Point (pI)

36.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AA_permease_2 PF13520 29 - 422 1.5e-36 Amino acid permease
AA_permease PF00324 49 - 427 2.3e-17 Amino acid permease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 426
AccB1I GGYRCC 2 cut(s) 320, 426
AccB7I CCANNNNNTGG 1 cut(s) 1019
AccII CGCG 1 cut(s) 986
AciI CCGC 6 cut(s) 123, 156, 231, 264, 339, 986
AclWI GGATC 4 cut(s) 316, 793, 807, 987
AcsI RAATTY 3 cut(s) 1023, 1066, 1093
AcyI GRCGYC 1 cut(s) 342
AfaI GTAC 3 cut(s) 428, 676, 869
AfiI CCNNNNNNNGG 6 cut(s) 260, 305, 436, 582, 645, 1019
AjnI CCWGG 2 cut(s) 323, 1198
AluBI AGCT 5 cut(s) 76, 238, 485, 917, 1195
AluI AGCT 5 cut(s) 76, 238, 485, 917, 1195
Alw21I GWGCWC 1 cut(s) 240
AlwI GGATC 4 cut(s) 316, 793, 807, 987
Ama87I CYCGRG 1 cut(s) 215
AoxI GGCC 6 cut(s) 124, 160, 279, 296, 419, 1172
ApeKI GCWGC 4 cut(s) 356, 836, 927, 1195
ApoI RAATTY 3 cut(s) 1023, 1066, 1093
ArsI GACNNNNNNTTYG 4 cut(s) 275, 307, 1258, 1290
Asp700I GAANNNNTTC 2 cut(s) 626, 1349
Asp718I GGTACC 1 cut(s) 426
AspA2I CCTAGG 2 cut(s) 422, 974
AspS9I GGNCC 5 cut(s) 125, 161, 279, 296, 763
AsuC2I CCSGG 3 cut(s) 255, 287, 820
AsuHPI GGTGA 3 cut(s) 31, 220, 1219
AsuII TTCGAA 1 cut(s) 111
AvaI CYCGRG 1 cut(s) 215
AvaII GGWCC 1 cut(s) 763
AvrII CCTAGG 2 cut(s) 422, 974
BaeGI GKGCMC 1 cut(s) 323
BanI GGYRCC 2 cut(s) 320, 426
BanII GRGCYC 1 cut(s) 240
Bbv12I GWGCWC 1 cut(s) 240
BbvCI CCTCAGC 2 cut(s) 335, 831
BbvI GCAGC 4 cut(s) 343, 823, 939, 1182
BccI CCATC 3 cut(s) 1234, 1243, 1305
BceAI ACGGC 1 cut(s) 277
BcgI CGANNNNNNTGC 2 cut(s) 1177, 1211
BciT130I CCWGG 2 cut(s) 325, 1200
BclI TGATCA 2 cut(s) 1041, 1209
BcnI CCSGG 3 cut(s) 255, 287, 820
BfaI CTAG 2 cut(s) 423, 975
BglI GCCNNNNNGGC 2 cut(s) 132, 287
BisI GCNGC 8 cut(s) 124, 156, 265, 340, 357, 837, 928, 1196
BlnI CCTAGG 2 cut(s) 422, 974
BlpI GCTNAGC 1 cut(s) 481
BlsI GCNGC 8 cut(s) 125, 157, 266, 341, 358, 838, 929, 1197
BmcAI AGTACT 2 cut(s) 676, 869
Bme1390I CCNGG 5 cut(s) 255, 287, 325, 820, 1200
Bme18I GGWCC 1 cut(s) 763
BmeT110I CYCGRG 1 cut(s) 215
BmgT120I GGNCC 5 cut(s) 125, 161, 279, 296, 763
BmiI GGNNCC 4 cut(s) 163, 322, 428, 765
BmrFI CCNGG 5 cut(s) 255, 287, 325, 820, 1200
BmrI ACTGGG 1 cut(s) 359
BmsI GCATC 1 cut(s) 1146
BmuI ACTGGG 1 cut(s) 359
BpmI CTGGAG 1 cut(s) 226
Bpu10I CCTNAGC 2 cut(s) 335, 831
Bpu1102I GCTNAGC 1 cut(s) 481
Bpu14I TTCGAA 1 cut(s) 111
BpuMI CCSGG 3 cut(s) 255, 287, 820
BsaHI GRCGYC 1 cut(s) 342
BsaJI CCNNGG 7 cut(s) 216, 253, 422, 701, 717, 974, 1013
BsaXI ACNNNNNCTCC 4 cut(s) 43, 73, 1115, 1145
Bsc4I CCNNNNNNNGG 6 cut(s) 260, 305, 436, 582, 645, 1019
Bse118I RCCGGY 2 cut(s) 119, 158
Bse1I ACTGG 3 cut(s) 365, 481, 875
Bse3DI GCAATG 2 cut(s) 351, 846
BseBI CCWGG 2 cut(s) 325, 1200
BseDI CCNNGG 7 cut(s) 216, 253, 422, 701, 717, 974, 1013
BseGI GGATG 2 cut(s) 84, 1316
BseLI CCNNNNNNNGG 6 cut(s) 260, 305, 436, 582, 645, 1019
BseMI GCAATG 2 cut(s) 351, 846
BseMII CTCAG 2 cut(s) 349, 822
BseNI ACTGG 3 cut(s) 365, 481, 875
BseRI GAGGAG 1 cut(s) 1162
BseSI GKGCMC 1 cut(s) 323
BseXI GCAGC 4 cut(s) 343, 823, 939, 1182
Bsh1236I CGCG 1 cut(s) 986
Bsh1285I CGRYCG 1 cut(s) 286
BshFI GGCC 6 cut(s) 126, 162, 281, 298, 421, 1174
BshNI GGYRCC 2 cut(s) 320, 426
BsiEI CGRYCG 1 cut(s) 286
BsiHKAI GWGCWC 1 cut(s) 240
BsiHKCI CYCGRG 1 cut(s) 215
BsiSI CCGG 5 cut(s) 120, 159, 255, 286, 819
BslFI GGGAC 2 cut(s) 197, 749
BslI CCNNNNNNNGG 6 cut(s) 260, 305, 436, 582, 645, 1019
BsmFI GGGAC 2 cut(s) 197, 749
BsmI GAATGC 1 cut(s) 359
BsnI GGCC 6 cut(s) 126, 162, 281, 298, 421, 1174
BsoBI CYCGRG 1 cut(s) 215
Bsp119I TTCGAA 1 cut(s) 111
Bsp1286I GDGCHC 2 cut(s) 240, 323
Bsp143I GATC 8 cut(s) 36, 308, 552, 785, 799, 992, 1041, 1209
Bsp1720I GCTNAGC 1 cut(s) 481
Bsp19I CCATGG 1 cut(s) 1013
BspACI CCGC 6 cut(s) 123, 156, 231, 264, 339, 986
BspANI GGCC 6 cut(s) 126, 162, 281, 298, 421, 1174
BspCNI CTCAG 2 cut(s) 348, 823
BspFNI CGCG 1 cut(s) 986
BspLI GGNNCC 4 cut(s) 163, 322, 428, 765
BspPI GGATC 4 cut(s) 316, 793, 807, 987
BspQI GCTCTTC 1 cut(s) 132
BspT104I TTCGAA 1 cut(s) 111
BspT107I GGYRCC 2 cut(s) 320, 426
BsrDI GCAATG 2 cut(s) 351, 846
BsrFI RCCGGY 2 cut(s) 119, 158
BsrI ACTGG 3 cut(s) 365, 481, 875
BssAI RCCGGY 2 cut(s) 119, 158
BssECI CCNNGG 7 cut(s) 216, 253, 422, 701, 717, 974, 1013
BssMI GATC 8 cut(s) 36, 308, 552, 785, 799, 992, 1041, 1209
BssNI GRCGYC 1 cut(s) 342
BssT1I CCWWGG 4 cut(s) 422, 717, 974, 1013
Bst2UI CCWGG 2 cut(s) 325, 1200
Bst4CI ACNGT 1 cut(s) 1270
Bst6I CTCTTC 2 cut(s) 132, 1163
BstACI GRCGYC 1 cut(s) 342
BstBI TTCGAA 1 cut(s) 111
BstC8I GCNNGC 4 cut(s) 121, 144, 160, 853
BstDEI CTNAG 4 cut(s) 335, 481, 831, 923
BstDSI CCRYGG 1 cut(s) 1013
BstF5I GGATG 2 cut(s) 84, 1316
BstFNI CGCG 1 cut(s) 986
BstKTI GATC 8 cut(s) 39, 311, 555, 788, 802, 995, 1044, 1212
BstMBI GATC 8 cut(s) 36, 308, 552, 785, 799, 992, 1041, 1209
BstMCI CGRYCG 1 cut(s) 286
BstMWI GCNNNNNNNGC 5 cut(s) 132, 152, 264, 287, 836
BstNI CCWGG 2 cut(s) 325, 1200
BstSCI CCNGG 5 cut(s) 253, 285, 323, 818, 1198
BstSLI GKGCMC 1 cut(s) 323
BstUI CGCG 1 cut(s) 986
BstV1I GCAGC 4 cut(s) 343, 823, 939, 1182
BstXI CCANNNNNNTGG 1 cut(s) 947
BsuRI GGCC 6 cut(s) 126, 162, 281, 298, 421, 1174
BtgI CCRYGG 1 cut(s) 1013
BtsCI GGATG 2 cut(s) 84, 1316
BtsI GCAGTG 1 cut(s) 937
BtsIMutI CAGTG 3 cut(s) 937, 1037, 1366
Cac8I GCNNGC 4 cut(s) 121, 144, 160, 853
Cfr10I RCCGGY 2 cut(s) 119, 158
Cfr13I GGNCC 5 cut(s) 125, 161, 279, 296, 763
CseI GACGC 2 cut(s) 331, 1119
Csp6I GTAC 3 cut(s) 427, 675, 868
CviAII CATG 7 cut(s) 385, 544, 751, 827, 1014, 1063, 1213
CviQI GTAC 3 cut(s) 427, 675, 868
DdeI CTNAG 4 cut(s) 335, 481, 831, 923
DpnI GATC 8 cut(s) 38, 310, 554, 787, 801, 994, 1043, 1211
DpnII GATC 8 cut(s) 36, 308, 552, 785, 799, 992, 1041, 1209
Eam1104I CTCTTC 2 cut(s) 132, 1163
EarI CTCTTC 2 cut(s) 132, 1163
Ecl136II GAGCTC 1 cut(s) 238
Eco130I CCWWGG 4 cut(s) 422, 717, 974, 1013
Eco147I AGGCCT 1 cut(s) 1174
Eco24I GRGCYC 1 cut(s) 240
Eco47I GGWCC 1 cut(s) 763
Eco53kI GAGCTC 1 cut(s) 238
Eco88I CYCGRG 1 cut(s) 215
EcoICRI GAGCTC 1 cut(s) 238
EcoRII CCWGG 2 cut(s) 323, 1198
EcoT14I CCWWGG 4 cut(s) 422, 717, 974, 1013
EcoT38I GRGCYC 1 cut(s) 240
ErhI CCWWGG 4 cut(s) 422, 717, 974, 1013
FaeI CATG 7 cut(s) 388, 547, 754, 830, 1017, 1066, 1216
FaqI GGGAC 2 cut(s) 197, 749
FatI CATG 7 cut(s) 384, 543, 750, 826, 1013, 1062, 1212
FbaI TGATCA 2 cut(s) 1041, 1209
Fnu4HI GCNGC 8 cut(s) 124, 156, 265, 340, 357, 837, 928, 1196
FokI GGATG 2 cut(s) 71, 1323
FriOI GRGCYC 1 cut(s) 240
Fsp4HI GCNGC 8 cut(s) 124, 156, 265, 340, 357, 837, 928, 1196
FspBI CTAG 2 cut(s) 423, 975
GluI GCNGC 8 cut(s) 124, 156, 265, 340, 357, 837, 928, 1196
GsuI CTGGAG 1 cut(s) 226
HaeIII GGCC 6 cut(s) 126, 162, 281, 298, 421, 1174
HapII CCGG 5 cut(s) 120, 159, 255, 286, 819
HgaI GACGC 2 cut(s) 331, 1119
Hin1I GRCGYC 1 cut(s) 342
Hin1II CATG 7 cut(s) 388, 547, 754, 830, 1017, 1066, 1216
HinfI GANTC 5 cut(s) 5, 410, 815, 966, 1222
HpaII CCGG 5 cut(s) 120, 159, 255, 286, 819
HphI GGTGA 3 cut(s) 31, 220, 1219
Hpy188I TCNGA 3 cut(s) 705, 804, 1188
Hpy188III TCNNGA 4 cut(s) 26, 34, 205, 407
HpyAV CCTTC 4 cut(s) 176, 259, 385, 595
HpyCH4III ACNGT 1 cut(s) 1270
HpyCH4V TGCA 4 cut(s) 359, 750, 1091, 1335
HpyF10VI GCNNNNNNNGC 5 cut(s) 132, 152, 264, 287, 836
HpyF3I CTNAG 4 cut(s) 335, 481, 831, 923
Hsp92I GRCGYC 1 cut(s) 342
Hsp92II CATG 7 cut(s) 388, 547, 754, 830, 1017, 1066, 1216
KpnI GGTACC 1 cut(s) 430
KroI GCCGGC 2 cut(s) 119, 158
KroNI GCCGGC 2 cut(s) 121, 160
Ksp22I TGATCA 2 cut(s) 1041, 1209
Kzo9I GATC 8 cut(s) 36, 308, 552, 785, 799, 992, 1041, 1209
LguI GCTCTTC 1 cut(s) 132
Lsp1109I GCAGC 4 cut(s) 343, 823, 939, 1182
LweI GCATC 1 cut(s) 1146
MaeI CTAG 2 cut(s) 423, 975
MalI GATC 8 cut(s) 38, 310, 554, 787, 801, 994, 1043, 1211
MboI GATC 8 cut(s) 36, 308, 552, 785, 799, 992, 1041, 1209
MboII GAAGA 8 cut(s) 149, 184, 577, 622, 622, 1165, 1180, 1388
MhlI GDGCHC 2 cut(s) 240, 323
MluCI AATT 6 cut(s) 1023, 1066, 1080, 1093, 1305, 1371
MmeI TCCRAC 1 cut(s) 1000
MreI CGCCGGCG 1 cut(s) 119
MroNI GCCGGC 2 cut(s) 119, 158
MroXI GAANNNNTTC 2 cut(s) 626, 1349
MseI TTAA 2 cut(s) 570, 653
MslI CAYNNNNRTG 1 cut(s) 749
MspA1I CMGCKG 1 cut(s) 339
MspI CCGG 5 cut(s) 120, 159, 255, 286, 819
MspR9I CCNGG 5 cut(s) 255, 287, 325, 820, 1200
Mva1269I GAATGC 1 cut(s) 359
MvaI CCWGG 2 cut(s) 325, 1200
MvnI CGCG 1 cut(s) 986
MwoI GCNNNNNNNGC 5 cut(s) 132, 152, 264, 287, 836
NaeI GCCGGC 2 cut(s) 121, 160
NciI CCSGG 3 cut(s) 255, 287, 820
NcoI CCATGG 1 cut(s) 1013
NdeII GATC 8 cut(s) 36, 308, 552, 785, 799, 992, 1041, 1209
NgoMIV GCCGGC 2 cut(s) 119, 158
NlaIII CATG 7 cut(s) 388, 547, 754, 830, 1017, 1066, 1216
NlaIV GGNNCC 4 cut(s) 163, 322, 428, 765
NmeAIII GCCGAG 2 cut(s) 159, 259
NspV TTCGAA 1 cut(s) 111
PceI AGGCCT 1 cut(s) 1174
PciSI GCTCTTC 1 cut(s) 132
PctI GAATGC 1 cut(s) 359
PdiI GCCGGC 2 cut(s) 121, 160
PdmI GAANNNNTTC 2 cut(s) 626, 1349
PfeI GAWTC 5 cut(s) 5, 410, 815, 966, 1222
PflMI CCANNNNNTGG 1 cut(s) 1019
PkrI GCNGC 8 cut(s) 125, 157, 266, 341, 358, 838, 929, 1197
Psp124BI GAGCTC 1 cut(s) 240
Psp6I CCWGG 2 cut(s) 323, 1198
PspGI CCWGG 2 cut(s) 323, 1198
PspN4I GGNNCC 4 cut(s) 163, 322, 428, 765
PspPI GGNCC 5 cut(s) 125, 161, 279, 296, 763
RsaI GTAC 3 cut(s) 428, 676, 869
RsaNI GTAC 3 cut(s) 427, 675, 868
RseI CAYNNNNRTG 1 cut(s) 749
SacI GAGCTC 1 cut(s) 240
SapI GCTCTTC 1 cut(s) 132
SaqAI TTAA 2 cut(s) 570, 653
SatI GCNGC 8 cut(s) 124, 156, 265, 340, 357, 837, 928, 1196
Sau3AI GATC 8 cut(s) 36, 308, 552, 785, 799, 992, 1041, 1209
Sau96I GGNCC 5 cut(s) 125, 161, 279, 296, 763
ScaI AGTACT 2 cut(s) 676, 869
ScrFI CCNGG 5 cut(s) 255, 287, 325, 820, 1200
SduI GDGCHC 2 cut(s) 240, 323
SfaNI GCATC 1 cut(s) 1146
SfuI TTCGAA 1 cut(s) 111
SgrAI CRCCGGYG 1 cut(s) 119
SinI GGWCC 1 cut(s) 763
SmiMI CAYNNNNRTG 1 cut(s) 749
Sse9I AATT 6 cut(s) 1023, 1066, 1080, 1093, 1305, 1371
SseBI AGGCCT 1 cut(s) 1174
SsiI CCGC 6 cut(s) 123, 156, 231, 264, 339, 986
SspI AATATT 1 cut(s) 1331
SspMI CTAG 2 cut(s) 423, 975
SstI GAGCTC 1 cut(s) 240
StuI AGGCCT 1 cut(s) 1174
StyD4I CCNGG 5 cut(s) 253, 285, 323, 818, 1198
StyI CCWWGG 4 cut(s) 422, 717, 974, 1013
TaaI ACNGT 1 cut(s) 1270
TaqI TCGA 3 cut(s) 111, 991, 1180
TaqII GACCGA 1 cut(s) 778
TasI AATT 6 cut(s) 1023, 1066, 1080, 1093, 1305, 1371
TatI WGTACW 2 cut(s) 674, 867
TauI GCSGC 4 cut(s) 126, 158, 267, 342
TfiI GAWTC 5 cut(s) 5, 410, 815, 966, 1222
Tru1I TTAA 2 cut(s) 570, 653
Tru9I TTAA 2 cut(s) 570, 653
TscAI CASTG 3 cut(s) 937, 1044, 1366
TseI GCWGC 4 cut(s) 356, 836, 927, 1195
TspDTI ATGAA 7 cut(s) 190, 815, 1074, 1079, 1126, 1205, 1340
TspRI CASTG 3 cut(s) 937, 1044, 1366
Van91I CCANNNNNTGG 1 cut(s) 1019
VpaK11BI GGWCC 1 cut(s) 763
XapI RAATTY 3 cut(s) 1023, 1066, 1093
XmaJI CCTAGG 2 cut(s) 422, 974
XmnI GAANNNNTTC 2 cut(s) 626, 1349
XspI CTAG 2 cut(s) 423, 975
ZrmI AGTACT 2 cut(s) 676, 869
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.