FvH4_4g00560

Belongs to the universal ribosomal protein uL22 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0016302
Physical Location & Seq
Forward (+)
492181 .. 495013
2833 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g00560.t1

Sequence Viewer

Length: 711 bp
ATGGTTGGTTGGCAAAGGAATTGTATTCAATCCCTAACTCGTCATTTTGGAAAAGCAACACTATTCGAGACCCAACAATCACTCTTGCGCCGCCCTTTTTATCTCTACTCCCAACATTCGGGAATCTCCAGTTCAAGGAACTTACTTGAGGAATTCTCGTCTGATGTCCCATCTCCCAATACACAAACGCCACCGCCTCCATGTTTGAAACAAGTTCAATATGTCTTGAAGGGCGTTACTCAGGACCCTAACAAGATCGATCTGGTTGGCAAATTGGTTCGTGGTATGCGTGTTGAAGATGTGTTGTCACAATTGTCAGTGACAGACAAGCAAGCTGCAAAAACCATGTATCAGGCTATATTTTCAGCTCGAGCAGATGCAACATATAAACATGGGTTGGATCCAGATCGTCTACTTGTTGCTGGGGCATCTATTGGAAAAGGATTTGTGGGATTCAGCAAGAAGAGACTGGCTTACCATGGTAAAGGCAATGGAATTAAAGTGAGACCAAAACACCAACTGACGGTGGTTCTAAGGGAGATTGCCCCTGAAGAGGAGGCGCAGATAGAAGGACAAAGAGCTGACAATTTTCTTTATCTCAGTAAGCGCCTCAGGCTCACTAAGGAGGAAAACCAGCATGTTCCTCCCCAGCTTCTAAGGAAAAACAAAGACAAATACTGTAACGCTTCGCCAAGTGGTATGGCTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L22

Protein Analysis

237

Amino Acids

26.48

Weight (kDa)

9.79

Isoelectric Point (pI)

47.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L22 PF00237 77 - 178 1.6e-14 Ribosomal protein L22p/L17e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016302)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g00560
malus_domestica MD03G1130200.v1.1 MD06G1011100.v1.1
prunus_persica Prupe.2G035300_v2.0.a1 Prupe.7G027600_v2.0.a1
pyrus_communis pycom06g00910
rosa_chinensis RchiOBHm_Chr4g0386011
rosa_laevigata RLG00000010181
rosa_multiflora Rmu_sc0000472.1_g000020
rosa_rugosa Rorug03G0306200
rosa_samantha Rh4AG010000 Rh4BG007000 Rh4CG010700 Rh4DG008100
rosa_wichuraiana Rw4G000140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 412
AciI CCGC 2 cut(s) 91, 194
AclWI GGATC 2 cut(s) 395, 408
AcsI RAATTY 1 cut(s) 152
AcuI CTGAAG 1 cut(s) 570
AfiI CCNNNNNNNGG 4 cut(s) 118, 135, 523, 553
AgsI TTSAA 6 cut(s) 29, 135, 208, 218, 229, 296
AluBI AGCT 4 cut(s) 335, 368, 581, 652
AluI AGCT 4 cut(s) 335, 368, 581, 652
Alw26I GTCTC 3 cut(s) 62, 460, 499
AlwI GGATC 2 cut(s) 395, 408
Ama87I CYCGRG 1 cut(s) 369
ApeKI GCWGC 1 cut(s) 335
ApoI RAATTY 1 cut(s) 152
AspLEI GCGC 3 cut(s) 90, 562, 609
AspS9I GGNCC 1 cut(s) 244
AvaI CYCGRG 1 cut(s) 369
AvaII GGWCC 1 cut(s) 244
AxyI CCTNAGG 1 cut(s) 611
BamHI GGATCC 1 cut(s) 400
BbvI GCAGC 1 cut(s) 322
BccI CCATC 1 cut(s) 178
BcoDI GTCTC 3 cut(s) 62, 460, 499
BfoI RGCGCY 1 cut(s) 610
BisI GCNGC 2 cut(s) 91, 336
BlsI GCNGC 2 cut(s) 92, 337
Bme18I GGWCC 1 cut(s) 244
BmeT110I CYCGRG 1 cut(s) 369
BmgT120I GGNCC 1 cut(s) 244
BmiI GGNNCC 2 cut(s) 246, 402
BmsI GCATC 2 cut(s) 367, 437
BplI GAGNNNNNCTC 2 cut(s) 140, 172
BpmI CTGGAG 1 cut(s) 112
BpuEI CTTGAG 1 cut(s) 167
Bsa29I ATCGAT 1 cut(s) 258
BsaBI GATNNNNATC 1 cut(s) 405
BsaI GGTCTC 2 cut(s) 62, 499
BsaJI CCNNGG 1 cut(s) 478
Bsc4I CCNNNNNNNGG 4 cut(s) 118, 135, 523, 553
Bse1I ACTGG 2 cut(s) 129, 474
Bse21I CCTNAGG 1 cut(s) 611
Bse3DI GCAATG 1 cut(s) 496
Bse8I GATNNNNATC 1 cut(s) 405
BseCI ATCGAT 1 cut(s) 258
BseDI CCNNGG 1 cut(s) 478
BseJI GATNNNNATC 1 cut(s) 405
BseLI CCNNNNNNNGG 4 cut(s) 118, 135, 523, 553
BseMI GCAATG 1 cut(s) 496
BseMII CTCAG 3 cut(s) 254, 613, 625
BseNI ACTGG 2 cut(s) 129, 474
BseRI GAGGAG 1 cut(s) 569
BseXI GCAGC 1 cut(s) 322
BseYI CCCAGC 2 cut(s) 422, 648
BshVI ATCGAT 1 cut(s) 258
BsiHKCI CYCGRG 1 cut(s) 369
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 4 cut(s) 118, 135, 523, 553
BsmAI GTCTC 3 cut(s) 62, 460, 499
BsmFI GGGAC 1 cut(s) 152
Bso31I GGTCTC 2 cut(s) 62, 499
BsoBI CYCGRG 1 cut(s) 369
Bsp143I GATC 4 cut(s) 255, 259, 400, 406
Bsp19I CCATGG 1 cut(s) 478
BspACI CCGC 2 cut(s) 91, 194
BspCNI CTCAG 3 cut(s) 253, 612, 624
BspDI ATCGAT 1 cut(s) 258
BspHI TCATGA 1 cut(s) 707
BspLI GGNNCC 2 cut(s) 246, 402
BspPI GGATC 2 cut(s) 395, 408
BspTNI GGTCTC 2 cut(s) 62, 499
BsrDI GCAATG 1 cut(s) 496
BsrI ACTGG 2 cut(s) 129, 474
BssECI CCNNGG 1 cut(s) 478
BssMI GATC 4 cut(s) 255, 259, 400, 406
BssT1I CCWWGG 1 cut(s) 478
Bst4CI ACNGT 2 cut(s) 526, 680
Bst6I CTCTTC 2 cut(s) 458, 546
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 6 cut(s) 240, 533, 599, 611, 621, 656
BstDSI CCRYGG 1 cut(s) 478
BstH2I RGCGCY 1 cut(s) 610
BstHHI GCGC 3 cut(s) 90, 562, 609
BstKTI GATC 4 cut(s) 258, 262, 403, 409
BstMAI GTCTC 3 cut(s) 62, 460, 499
BstMBI GATC 4 cut(s) 255, 259, 400, 406
BstMWI GCNNNNNNNGC 1 cut(s) 613
BstNSI RCATGY 1 cut(s) 641
BstV1I GCAGC 1 cut(s) 322
BstX2I RGATCY 1 cut(s) 400
BstYI RGATCY 1 cut(s) 400
Bsu15I ATCGAT 1 cut(s) 258
Bsu36I CCTNAGG 1 cut(s) 611
BsuTUI ATCGAT 1 cut(s) 258
BtgI CCRYGG 1 cut(s) 478
BtsIMutI CAGTG 1 cut(s) 324
Cac8I GCNNGC 1 cut(s) 333
CciI TCATGA 1 cut(s) 707
CfoI GCGC 3 cut(s) 90, 562, 609
Cfr13I GGNCC 1 cut(s) 244
ClaI ATCGAT 1 cut(s) 258
CviAII CATG 6 cut(s) 201, 346, 392, 479, 638, 708
CviJI RGCY 8 cut(s) 335, 356, 368, 473, 581, 616, 652, 704
CviKI_1 RGCY 8 cut(s) 335, 356, 368, 473, 581, 616, 652, 704
DdeI CTNAG 6 cut(s) 240, 533, 599, 611, 621, 656
DpnI GATC 4 cut(s) 257, 261, 402, 408
DpnII GATC 4 cut(s) 255, 259, 400, 406
Eam1104I CTCTTC 2 cut(s) 458, 546
EarI CTCTTC 2 cut(s) 458, 546
Eco130I CCWWGG 1 cut(s) 478
Eco31I GGTCTC 2 cut(s) 62, 499
Eco47I GGWCC 1 cut(s) 244
Eco57I CTGAAG 1 cut(s) 570
Eco81I CCTNAGG 1 cut(s) 611
Eco88I CYCGRG 1 cut(s) 369
EcoO109I RGGNCCY 1 cut(s) 244
EcoRI GAATTC 1 cut(s) 152
EcoT14I CCWWGG 1 cut(s) 478
ErhI CCWWGG 1 cut(s) 478
FaeI CATG 6 cut(s) 204, 349, 395, 482, 641, 711
FaqI GGGAC 1 cut(s) 152
FatI CATG 6 cut(s) 200, 345, 391, 478, 637, 707
FblI GTMKAC 1 cut(s) 412
Fnu4HI GCNGC 2 cut(s) 91, 336
Fsp4HI GCNGC 2 cut(s) 91, 336
GlaI GCGC 3 cut(s) 89, 561, 608
GluI GCNGC 2 cut(s) 91, 336
GsaI CCCAGC 2 cut(s) 426, 652
GsuI CTGGAG 1 cut(s) 112
HaeII RGCGCY 1 cut(s) 610
HhaI GCGC 3 cut(s) 90, 562, 609
Hin1II CATG 6 cut(s) 204, 349, 395, 482, 641, 711
Hin6I GCGC 3 cut(s) 88, 560, 607
HinP1I GCGC 3 cut(s) 88, 560, 607
HinfI GANTC 2 cut(s) 123, 453
Hpy166II GTNNAC 1 cut(s) 413
Hpy188I TCNGA 1 cut(s) 163
Hpy188III TCNNGA 6 cut(s) 67, 120, 226, 242, 404, 708
Hpy8I GTNNAC 1 cut(s) 413
HpyAV CCTTC 2 cut(s) 223, 563
HpyCH4III ACNGT 2 cut(s) 526, 680
HpyCH4V TGCA 2 cut(s) 338, 380
HpyF10VI GCNNNNNNNGC 1 cut(s) 613
HpyF3I CTNAG 6 cut(s) 240, 533, 599, 611, 621, 656
Hsp92II CATG 6 cut(s) 204, 349, 395, 482, 641, 711
HspAI GCGC 3 cut(s) 88, 560, 607
Kzo9I GATC 4 cut(s) 255, 259, 400, 406
Lsp1109I GCAGC 1 cut(s) 322
LweI GCATC 2 cut(s) 367, 437
MaeIII GTNAC 4 cut(s) 235, 306, 319, 680
MalI GATC 4 cut(s) 257, 261, 402, 408
MboI GATC 4 cut(s) 255, 259, 400, 406
MboII GAAGA 3 cut(s) 308, 475, 563
MfeI CAATTG 1 cut(s) 311
MflI RGATCY 1 cut(s) 400
MluCI AATT 6 cut(s) 19, 152, 272, 311, 495, 586
MmeI TCCRAC 1 cut(s) 378
MnlI CCTC 7 cut(s) 142, 207, 547, 550, 619, 620, 654
MseI TTAA 1 cut(s) 498
MunI CAATTG 1 cut(s) 311
MwoI GCNNNNNNNGC 1 cut(s) 613
NcoI CCATGG 1 cut(s) 478
NdeII GATC 4 cut(s) 255, 259, 400, 406
NlaIII CATG 6 cut(s) 204, 349, 395, 482, 641, 711
NlaIV GGNNCC 2 cut(s) 246, 402
NmuCI GTSAC 2 cut(s) 306, 319
NspI RCATGY 1 cut(s) 641
PaeR7I CTCGAG 1 cut(s) 369
PagI TCATGA 1 cut(s) 707
PcsI WCGNNNNNNNCGW 1 cut(s) 286
PfeI GAWTC 2 cut(s) 123, 453
PkrI GCNGC 2 cut(s) 92, 337
PpuMI RGGWCCY 1 cut(s) 244
Psp5II RGGWCCY 1 cut(s) 244
PspFI CCCAGC 2 cut(s) 422, 648
PspN4I GGNNCC 2 cut(s) 246, 402
PspPI GGNCC 1 cut(s) 244
PspPPI RGGWCCY 1 cut(s) 244
PspXI VCTCGAGB 1 cut(s) 369
PsuI RGATCY 1 cut(s) 400
SaqAI TTAA 1 cut(s) 498
SatI GCNGC 2 cut(s) 91, 336
Sau3AI GATC 4 cut(s) 255, 259, 400, 406
Sau96I GGNCC 1 cut(s) 244
SetI ASST 4 cut(s) 337, 370, 583, 654
SfaNI GCATC 2 cut(s) 367, 437
Sfr274I CTCGAG 1 cut(s) 369
SinI GGWCC 1 cut(s) 244
SlaI CTCGAG 1 cut(s) 369
SmlI CTYRAG 2 cut(s) 146, 369
SmoI CTYRAG 2 cut(s) 146, 369
Sse9I AATT 6 cut(s) 19, 152, 272, 311, 495, 586
SsiI CCGC 2 cut(s) 91, 194
StyI CCWWGG 1 cut(s) 478
TaaI ACNGT 2 cut(s) 526, 680
TaqI TCGA 3 cut(s) 66, 258, 370
TasI AATT 6 cut(s) 19, 152, 272, 311, 495, 586
TauI GCSGC 1 cut(s) 93
TfiI GAWTC 2 cut(s) 123, 453
Tru1I TTAA 1 cut(s) 498
Tru9I TTAA 1 cut(s) 498
TscAI CASTG 1 cut(s) 324
TseFI GTSAC 2 cut(s) 306, 319
TseI GCWGC 1 cut(s) 335
Tsp45I GTSAC 2 cut(s) 306, 319
TspDTI ATGAA 1 cut(s) 696
TspRI CASTG 1 cut(s) 324
VpaK11BI GGWCC 1 cut(s) 244
XapI RAATTY 1 cut(s) 152
XceI RCATGY 1 cut(s) 641
XhoI CTCGAG 1 cut(s) 369
XmiI GTMKAC 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.