RchiOBHm_Chr4g0386011

Belongs to the universal ribosomal protein uL22 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0016302
Physical Location & Seq
Forward (+)
1638153 .. 1641232
3080 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35941

Sequence Viewer

Length: 729 bp
ATGGTCGGTTGGCAAAGGAATTGTATACAATCCCTAACTCGACATTTTGGGAAAGCAACACTGGTCGAGGCCACTTCAACTCCTCAGACCCAACAATCACTCTTGCGGCGCCCTTTTTATCACTACTCTCAACACTTGGGAATCTCCAGTTCAAGGAACTTACTTTCGGATTCCTCGTCTAATGTCCCATCTCCCAATACCTTAAACCCACCGCCTCCGTCTTTGAAACAAGTTCAATATGTCTTAAAGGGCGTAACTCAGGACCCTAACAAGATCGACCTGGTTGGCAAACTGGTTCGTGGTATGCGTGTTGAAGATGTGTTGTCACAATTGTCAGTGACAGACAAGCAAGCTGCAAAAACCATGTATCAGGCTATTTACTCAGCTCGAGCAGATGCAACTTATAAACATGGGTTGGATCCAGACCGTCTACTTGTTGCTGGGGCATCTATTGGAAAGGGATTCGTGGGATTCAGCAAGAAGAGACTGGCCTACCATGGTAAAGGCAATGGAATTAAAGTGAGACCAAAACACCAACTGGCGGTGGTTTTAAGGGAGATTGCCCCTGAAGAGGAGGCGGAGATAGCCAGACAAAGAGCCGACAATTTTCTTTATCTCAGTAAGCGCCTCAGGCTCACCAAGGAGGAAAATAAGAATATTCCTCTCCAGCTTATTCGGAAAAACAAAGGCAAATTTAGTGATGGTGAACCAAGTGGTATGGCTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L22

Protein Analysis

242

Amino Acids

26.91

Weight (kDa)

10.06

Isoelectric Point (pI)

49.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L22 PF00237 83 - 174 1.7e-14 Ribosomal protein L22p/L17e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016302)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g00560
malus_domestica MD03G1130200.v1.1 MD06G1011100.v1.1
prunus_persica Prupe.2G035300_v2.0.a1 Prupe.7G027600_v2.0.a1
pyrus_communis pycom06g00910
rosa_chinensis RchiOBHm_Chr4g0386011
rosa_laevigata RLG00000010181
rosa_multiflora Rmu_sc0000472.1_g000020
rosa_rugosa Rorug03G0306200
rosa_samantha Rh4AG010000 Rh4BG007000 Rh4CG010700 Rh4DG008100
rosa_wichuraiana Rw4G000140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 405
AccB1I GGYRCC 1 cut(s) 108
AccI GTMKAC 2 cut(s) 25, 430
AciI CCGC 4 cut(s) 106, 212, 542, 578
AclWI GGATC 2 cut(s) 413, 426
AcsI RAATTY 1 cut(s) 692
AcuI CTGAAG 1 cut(s) 588
AcyI GRCGYC 1 cut(s) 109
AfiI CCNNNNNNNGG 3 cut(s) 153, 541, 571
AgsI TTSAA 5 cut(s) 78, 153, 226, 236, 314
AjnI CCWGG 1 cut(s) 279
AluBI AGCT 3 cut(s) 353, 386, 670
AluI AGCT 3 cut(s) 353, 386, 670
Alw26I GTCTC 2 cut(s) 478, 517
AlwI GGATC 2 cut(s) 413, 426
Ama87I CYCGRG 1 cut(s) 387
AoxI GGCC 2 cut(s) 69, 489
ApeKI GCWGC 1 cut(s) 353
ApoI RAATTY 1 cut(s) 692
AspLEI GCGC 2 cut(s) 111, 627
AspS9I GGNCC 1 cut(s) 262
AsuHPI GGTGA 2 cut(s) 628, 716
AvaI CYCGRG 1 cut(s) 387
AvaII GGWCC 1 cut(s) 262
AxyI CCTNAGG 1 cut(s) 629
BamHI GGATCC 1 cut(s) 418
BanI GGYRCC 1 cut(s) 108
BbvI GCAGC 1 cut(s) 340
BccI CCATC 2 cut(s) 196, 695
BciT130I CCWGG 1 cut(s) 281
BcoDI GTCTC 2 cut(s) 478, 517
BfoI RGCGCY 2 cut(s) 112, 628
BisI GCNGC 2 cut(s) 107, 354
BlsI GCNGC 2 cut(s) 108, 355
Bme1390I CCNGG 1 cut(s) 281
Bme18I GGWCC 1 cut(s) 262
BmeT110I CYCGRG 1 cut(s) 387
BmgT120I GGNCC 1 cut(s) 262
BmiI GGNNCC 3 cut(s) 110, 264, 420
BmrFI CCNGG 1 cut(s) 281
BmsI GCATC 2 cut(s) 385, 455
BpmI CTGGAG 2 cut(s) 130, 650
BsaHI GRCGYC 1 cut(s) 109
BsaI GGTCTC 1 cut(s) 517
BsaJI CCNNGG 2 cut(s) 496, 639
BsaXI ACNNNNNCTCC 2 cut(s) 64, 94
Bsc4I CCNNNNNNNGG 3 cut(s) 153, 541, 571
Bse1I ACTGG 5 cut(s) 66, 147, 297, 492, 543
Bse21I CCTNAGG 1 cut(s) 629
Bse3DI GCAATG 1 cut(s) 514
BseBI CCWGG 1 cut(s) 281
BseDI CCNNGG 2 cut(s) 496, 639
BseLI CCNNNNNNNGG 3 cut(s) 153, 541, 571
BseMI GCAATG 1 cut(s) 514
BseMII CTCAG 5 cut(s) 98, 272, 396, 631, 643
BseNI ACTGG 5 cut(s) 66, 147, 297, 492, 543
BseRI GAGGAG 2 cut(s) 72, 587
BseXI GCAGC 1 cut(s) 340
BseYI CCCAGC 1 cut(s) 440
BshFI GGCC 2 cut(s) 71, 491
BshNI GGYRCC 1 cut(s) 108
BsiHKCI CYCGRG 1 cut(s) 387
BslFI GGGAC 1 cut(s) 170
BslI CCNNNNNNNGG 3 cut(s) 153, 541, 571
BsmAI GTCTC 2 cut(s) 478, 517
BsmFI GGGAC 1 cut(s) 170
BsnI GGCC 2 cut(s) 71, 491
Bso31I GGTCTC 1 cut(s) 517
BsoBI CYCGRG 1 cut(s) 387
Bsp143I GATC 2 cut(s) 273, 418
Bsp19I CCATGG 1 cut(s) 496
BspACI CCGC 4 cut(s) 106, 212, 542, 578
BspANI GGCC 2 cut(s) 71, 491
BspCNI CTCAG 5 cut(s) 97, 271, 395, 630, 642
BspHI TCATGA 1 cut(s) 725
BspLI GGNNCC 3 cut(s) 110, 264, 420
BspPI GGATC 2 cut(s) 413, 426
BspT107I GGYRCC 1 cut(s) 108
BspTNI GGTCTC 1 cut(s) 517
BsrDI GCAATG 1 cut(s) 514
BsrI ACTGG 5 cut(s) 66, 147, 297, 492, 543
BssECI CCNNGG 2 cut(s) 496, 639
BssMI GATC 2 cut(s) 273, 418
BssNAI GTATAC 1 cut(s) 26
BssNI GRCGYC 1 cut(s) 109
BssT1I CCWWGG 2 cut(s) 496, 639
Bst1107I GTATAC 1 cut(s) 26
Bst2UI CCWGG 1 cut(s) 281
Bst4CI ACNGT 1 cut(s) 428
Bst6I CTCTTC 2 cut(s) 476, 564
BstACI GRCGYC 1 cut(s) 109
BstC8I GCNNGC 1 cut(s) 351
BstDEI CTNAG 5 cut(s) 84, 258, 382, 617, 629
BstDSI CCRYGG 1 cut(s) 496
BstH2I RGCGCY 2 cut(s) 112, 628
BstHHI GCGC 2 cut(s) 111, 627
BstKTI GATC 2 cut(s) 276, 421
BstMAI GTCTC 2 cut(s) 478, 517
BstMBI GATC 2 cut(s) 273, 418
BstMWI GCNNNNNNNGC 2 cut(s) 584, 631
BstNI CCWGG 1 cut(s) 281
BstSCI CCNGG 1 cut(s) 279
BstV1I GCAGC 1 cut(s) 340
BstX2I RGATCY 1 cut(s) 418
BstYI RGATCY 1 cut(s) 418
BstZ17I GTATAC 1 cut(s) 26
Bsu36I CCTNAGG 1 cut(s) 629
BsuRI GGCC 2 cut(s) 71, 491
BtgI CCRYGG 1 cut(s) 496
BtsIMutI CAGTG 2 cut(s) 59, 342
Cac8I GCNNGC 1 cut(s) 351
CciI TCATGA 1 cut(s) 725
CfoI GCGC 2 cut(s) 111, 627
Cfr13I GGNCC 1 cut(s) 262
CsiI ACCWGGT 1 cut(s) 279
CviAII CATG 4 cut(s) 364, 410, 497, 726
DdeI CTNAG 5 cut(s) 84, 258, 382, 617, 629
DinI GGCGCC 1 cut(s) 110
DpnI GATC 2 cut(s) 275, 420
DpnII GATC 2 cut(s) 273, 418
Eam1104I CTCTTC 2 cut(s) 476, 564
EarI CTCTTC 2 cut(s) 476, 564
EciI GGCGGA 1 cut(s) 593
Eco130I CCWWGG 2 cut(s) 496, 639
Eco31I GGTCTC 1 cut(s) 517
Eco47I GGWCC 1 cut(s) 262
Eco57I CTGAAG 1 cut(s) 588
Eco81I CCTNAGG 1 cut(s) 629
Eco88I CYCGRG 1 cut(s) 387
EcoO109I RGGNCCY 1 cut(s) 262
EcoRII CCWGG 1 cut(s) 279
EcoT14I CCWWGG 2 cut(s) 496, 639
EgeI GGCGCC 1 cut(s) 110
EheI GGCGCC 1 cut(s) 110
ErhI CCWWGG 2 cut(s) 496, 639
FaeI CATG 4 cut(s) 367, 413, 500, 729
FaiI YATR 9 cut(s) 26, 240, 305, 365, 405, 411, 498, 719, 727
FaqI GGGAC 1 cut(s) 170
FatI CATG 4 cut(s) 363, 409, 496, 725
FblI GTMKAC 2 cut(s) 25, 430
Fnu4HI GCNGC 2 cut(s) 107, 354
Fsp4HI GCNGC 2 cut(s) 107, 354
GlaI GCGC 2 cut(s) 110, 626
GluI GCNGC 2 cut(s) 107, 354
GsaI CCCAGC 1 cut(s) 444
GsuI CTGGAG 2 cut(s) 130, 650
HaeII RGCGCY 2 cut(s) 112, 628
HaeIII GGCC 2 cut(s) 71, 491
HhaI GCGC 2 cut(s) 111, 627
Hin1I GRCGYC 1 cut(s) 109
Hin1II CATG 4 cut(s) 367, 413, 500, 729
Hin6I GCGC 2 cut(s) 109, 625
HinP1I GCGC 2 cut(s) 109, 625
HinfI GANTC 4 cut(s) 141, 170, 462, 471
HphI GGTGA 2 cut(s) 628, 716
Hpy166II GTNNAC 3 cut(s) 26, 431, 707
Hpy188I TCNGA 3 cut(s) 87, 169, 678
Hpy188III TCNNGA 3 cut(s) 260, 422, 726
Hpy8I GTNNAC 3 cut(s) 26, 431, 707
HpyCH4III ACNGT 1 cut(s) 428
HpyCH4V TGCA 2 cut(s) 356, 398
HpyF10VI GCNNNNNNNGC 2 cut(s) 584, 631
HpyF3I CTNAG 5 cut(s) 84, 258, 382, 617, 629
Hsp92I GRCGYC 1 cut(s) 109
Hsp92II CATG 4 cut(s) 367, 413, 500, 729
HspAI GCGC 2 cut(s) 109, 625
KasI GGCGCC 1 cut(s) 108
Kzo9I GATC 2 cut(s) 273, 418
Lsp1109I GCAGC 1 cut(s) 340
LweI GCATC 2 cut(s) 385, 455
MabI ACCWGGT 1 cut(s) 279
MaeIII GTNAC 3 cut(s) 253, 324, 337
MalI GATC 2 cut(s) 275, 420
MboI GATC 2 cut(s) 273, 418
MboII GAAGA 3 cut(s) 326, 493, 581
MfeI CAATTG 1 cut(s) 329
MflI RGATCY 1 cut(s) 418
MluCI AATT 5 cut(s) 19, 329, 513, 604, 692
Mly113I GGCGCC 1 cut(s) 109
MmeI TCCRAC 1 cut(s) 396
MnlI CCTC 9 cut(s) 61, 93, 184, 225, 565, 568, 637, 638, 672
MseI TTAA 4 cut(s) 203, 245, 516, 551
MspR9I CCNGG 1 cut(s) 281
MunI CAATTG 1 cut(s) 329
MvaI CCWGG 1 cut(s) 281
MwoI GCNNNNNNNGC 2 cut(s) 584, 631
NarI GGCGCC 1 cut(s) 109
NcoI CCATGG 1 cut(s) 496
NdeII GATC 2 cut(s) 273, 418
NlaIII CATG 4 cut(s) 367, 413, 500, 729
NlaIV GGNNCC 3 cut(s) 110, 264, 420
NmuCI GTSAC 2 cut(s) 324, 337
PaeR7I CTCGAG 1 cut(s) 387
PagI TCATGA 1 cut(s) 725
PcsI WCGNNNNNNNCGW 2 cut(s) 173, 304
PfeI GAWTC 4 cut(s) 141, 170, 462, 471
PkrI GCNGC 2 cut(s) 108, 355
PluTI GGCGCC 1 cut(s) 112
PpuMI RGGWCCY 1 cut(s) 262
PsiI TTATAA 1 cut(s) 405
Psp5II RGGWCCY 1 cut(s) 262
Psp6I CCWGG 1 cut(s) 279
PspFI CCCAGC 1 cut(s) 440
PspGI CCWGG 1 cut(s) 279
PspN4I GGNNCC 3 cut(s) 110, 264, 420
PspPI GGNCC 1 cut(s) 262
PspPPI RGGWCCY 1 cut(s) 262
PspXI VCTCGAGB 1 cut(s) 387
PsuI RGATCY 1 cut(s) 418
SaqAI TTAA 4 cut(s) 203, 245, 516, 551
SatI GCNGC 2 cut(s) 107, 354
Sau3AI GATC 2 cut(s) 273, 418
Sau96I GGNCC 1 cut(s) 262
ScrFI CCNGG 1 cut(s) 281
SetI ASST 5 cut(s) 203, 282, 355, 388, 672
SexAI ACCWGGT 1 cut(s) 279
SfaNI GCATC 2 cut(s) 385, 455
SfoI GGCGCC 1 cut(s) 110
Sfr274I CTCGAG 1 cut(s) 387
SinI GGWCC 1 cut(s) 262
SlaI CTCGAG 1 cut(s) 387
SmlI CTYRAG 1 cut(s) 387
SmoI CTYRAG 1 cut(s) 387
Sse9I AATT 5 cut(s) 19, 329, 513, 604, 692
SsiI CCGC 4 cut(s) 106, 212, 542, 578
SspDI GGCGCC 1 cut(s) 108
SspI AATATT 1 cut(s) 658
StyD4I CCNGG 1 cut(s) 279
StyI CCWWGG 2 cut(s) 496, 639
TaaI ACNGT 1 cut(s) 428
TaqI TCGA 4 cut(s) 40, 66, 276, 388
TasI AATT 5 cut(s) 19, 329, 513, 604, 692
TauI GCSGC 1 cut(s) 109
TfiI GAWTC 4 cut(s) 141, 170, 462, 471
Tru1I TTAA 4 cut(s) 203, 245, 516, 551
Tru9I TTAA 4 cut(s) 203, 245, 516, 551
TscAI CASTG 2 cut(s) 66, 342
TseFI GTSAC 2 cut(s) 324, 337
TseI GCWGC 1 cut(s) 353
Tsp45I GTSAC 2 cut(s) 324, 337
TspDTI ATGAA 1 cut(s) 714
TspGWI ACGGA 1 cut(s) 207
TspRI CASTG 2 cut(s) 66, 342
VpaK11BI GGWCC 1 cut(s) 262
XapI RAATTY 1 cut(s) 692
XhoI CTCGAG 1 cut(s) 387
XmiI GTMKAC 2 cut(s) 25, 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.