Rmu_sc0000472.1_g000020

Belongs to the universal ribosomal protein uL22 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000472.1
OG0016302
Physical Location & Seq
Reverse (-)
99495 .. 102535
3041 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000472.1_g000020.1.cds

Sequence Viewer

Length: 855 bp
atgactaatcgacaacctcaacgactaatccaccagcaacctcacagcggcgaaccaccaccgcgacctcctccgaaccacctcttccaattcaacttcaggctattgcgcagctcattccaagccatggtcggttggcaaaggaattgtatacaatccctaactcgacattttgggaaagcaacactactcgaggccacttcaactcctcagacccaacaatcactcttgcggcgccccttttatcactactctcaacactcgggaatctccagttcaaggaacttactttcggattcctcgtctaatgtcccatctcccaataccttaaacccaccgcctccgtctttgaaacaagttcaatatgtcttaaagggcgtaactcaggaccctaacaagatcgacctggttggcaaactggttcgtggtatgcgtgttgaagatgtgttgtcacaattgtcagtgacagacaagcaagctgcaaaaaccatgtatcaggctatttactcagctcgagcagatgcaacttataaacatgggttggatccagaccgtctacttgttgctggggcatctattggaaagggattcgtgggattcagcaagaagagactggcctaccatggtaaaggcaatggaattaaagtgagaccaaaacaccaactgatggtggttttaagggagattgcccctgaagaggaggcggagatagccagacaaagagccgacaattttctttatctcagtaagcgcctcaggctcactaaggaggaaaataagaatattcctctccagcttattcggaaaaacaaaggcaaatttagtgatggtgaaccaagtggtttggcttcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L22

Protein Analysis

284

Amino Acids

31.92

Weight (kDa)

10.3

Isoelectric Point (pI)

52.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016302)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g00560
malus_domestica MD03G1130200.v1.1 MD06G1011100.v1.1
prunus_persica Prupe.2G035300_v2.0.a1 Prupe.7G027600_v2.0.a1
pyrus_communis pycom06g00910
rosa_chinensis RchiOBHm_Chr4g0386011
rosa_laevigata RLG00000010181
rosa_multiflora Rmu_sc0000472.1_g000020
rosa_rugosa Rorug03G0306200
rosa_samantha Rh4AG010000 Rh4BG007000 Rh4CG010700 Rh4DG008100
rosa_wichuraiana Rw4G000140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 531
Acc16I TGCGCA 1 cut(s) 110
AccB1I GGYRCC 1 cut(s) 234
AccB7I CCANNNNNTGG 2 cut(s) 127, 667
AccI GTMKAC 2 cut(s) 151, 556
AccII CGCG 1 cut(s) 64
AciI CCGC 5 cut(s) 48, 62, 232, 338, 704
AclWI GGATC 2 cut(s) 539, 552
AcsI RAATTY 1 cut(s) 818
AcuI CTGAAG 2 cut(s) 82, 714
AcyI GRCGYC 1 cut(s) 235
AfiI CCNNNNNNNGG 5 cut(s) 47, 127, 279, 667, 697
AgsI TTSAA 6 cut(s) 94, 204, 279, 352, 362, 440
AjnI CCWGG 1 cut(s) 405
AluBI AGCT 4 cut(s) 114, 479, 512, 796
AluI AGCT 4 cut(s) 114, 479, 512, 796
Alw26I GTCTC 2 cut(s) 604, 643
AlwI GGATC 2 cut(s) 539, 552
Ama87I CYCGRG 3 cut(s) 191, 262, 513
AoxI GGCC 2 cut(s) 195, 615
ApeKI GCWGC 2 cut(s) 111, 479
ApoI RAATTY 1 cut(s) 818
AspLEI GCGC 3 cut(s) 111, 237, 753
AspS9I GGNCC 1 cut(s) 388
AsuHPI GGTGA 1 cut(s) 842
AvaI CYCGRG 3 cut(s) 191, 262, 513
AvaII GGWCC 1 cut(s) 388
AxyI CCTNAGG 1 cut(s) 755
BamHI GGATCC 1 cut(s) 544
BanI GGYRCC 1 cut(s) 234
BbvI GCAGC 2 cut(s) 123, 466
BccI CCATC 3 cut(s) 322, 661, 821
BciT130I CCWGG 1 cut(s) 407
BcoDI GTCTC 2 cut(s) 604, 643
BfoI RGCGCY 2 cut(s) 238, 754
BisI GCNGC 4 cut(s) 49, 112, 233, 480
BlsI GCNGC 4 cut(s) 50, 113, 234, 481
Bme1390I CCNGG 1 cut(s) 407
Bme18I GGWCC 1 cut(s) 388
BmeT110I CYCGRG 3 cut(s) 191, 262, 513
BmgT120I GGNCC 1 cut(s) 388
BmiI GGNNCC 3 cut(s) 236, 390, 546
BmrFI CCNGG 1 cut(s) 407
BmsI GCATC 2 cut(s) 511, 581
BpmI CTGGAG 2 cut(s) 256, 776
BsaHI GRCGYC 1 cut(s) 235
BsaI GGTCTC 1 cut(s) 643
BsaJI CCNNGG 2 cut(s) 126, 622
BsaXI ACNNNNNCTCC 2 cut(s) 190, 220
Bsc4I CCNNNNNNNGG 5 cut(s) 47, 127, 279, 667, 697
Bse1I ACTGG 3 cut(s) 273, 423, 618
Bse21I CCTNAGG 1 cut(s) 755
Bse3DI GCAATG 1 cut(s) 640
BseBI CCWGG 1 cut(s) 407
BseDI CCNNGG 2 cut(s) 126, 622
BseLI CCNNNNNNNGG 5 cut(s) 47, 127, 279, 667, 697
BseMI GCAATG 1 cut(s) 640
BseMII CTCAG 5 cut(s) 224, 398, 522, 757, 769
BseNI ACTGG 3 cut(s) 273, 423, 618
BseRI GAGGAG 3 cut(s) 60, 198, 713
BseXI GCAGC 2 cut(s) 123, 466
BseYI CCCAGC 1 cut(s) 566
Bsh1236I CGCG 1 cut(s) 64
BshFI GGCC 2 cut(s) 197, 617
BshNI GGYRCC 1 cut(s) 234
BsiHKCI CYCGRG 3 cut(s) 191, 262, 513
BslFI GGGAC 1 cut(s) 296
BslI CCNNNNNNNGG 5 cut(s) 47, 127, 279, 667, 697
BsmAI GTCTC 2 cut(s) 604, 643
BsmFI GGGAC 1 cut(s) 296
BsnI GGCC 2 cut(s) 197, 617
Bso31I GGTCTC 1 cut(s) 643
BsoBI CYCGRG 3 cut(s) 191, 262, 513
Bsp143I GATC 2 cut(s) 399, 544
Bsp19I CCATGG 2 cut(s) 126, 622
BspACI CCGC 5 cut(s) 48, 62, 232, 338, 704
BspANI GGCC 2 cut(s) 197, 617
BspCNI CTCAG 5 cut(s) 223, 397, 521, 756, 768
BspFNI CGCG 1 cut(s) 64
BspHI TCATGA 1 cut(s) 851
BspLI GGNNCC 3 cut(s) 236, 390, 546
BspPI GGATC 2 cut(s) 539, 552
BspT107I GGYRCC 1 cut(s) 234
BspTNI GGTCTC 1 cut(s) 643
BsrDI GCAATG 1 cut(s) 640
BsrI ACTGG 3 cut(s) 273, 423, 618
BssECI CCNNGG 2 cut(s) 126, 622
BssMI GATC 2 cut(s) 399, 544
BssNAI GTATAC 1 cut(s) 152
BssNI GRCGYC 1 cut(s) 235
BssT1I CCWWGG 2 cut(s) 126, 622
Bst1107I GTATAC 1 cut(s) 152
Bst2UI CCWGG 1 cut(s) 407
Bst4CI ACNGT 1 cut(s) 554
Bst6I CTCTTC 3 cut(s) 89, 602, 690
BstACI GRCGYC 1 cut(s) 235
BstC8I GCNNGC 1 cut(s) 477
BstDEI CTNAG 6 cut(s) 210, 384, 508, 743, 755, 765
BstDSI CCRYGG 2 cut(s) 126, 622
BstFNI CGCG 1 cut(s) 64
BstH2I RGCGCY 2 cut(s) 238, 754
BstHHI GCGC 3 cut(s) 111, 237, 753
BstKTI GATC 2 cut(s) 402, 547
BstMAI GTCTC 2 cut(s) 604, 643
BstMBI GATC 2 cut(s) 399, 544
BstMWI GCNNNNNNNGC 2 cut(s) 710, 757
BstNI CCWGG 1 cut(s) 407
BstSCI CCNGG 1 cut(s) 405
BstUI CGCG 1 cut(s) 64
BstV1I GCAGC 2 cut(s) 123, 466
BstX2I RGATCY 1 cut(s) 544
BstYI RGATCY 1 cut(s) 544
BstZ17I GTATAC 1 cut(s) 152
Bsu36I CCTNAGG 1 cut(s) 755
BsuRI GGCC 2 cut(s) 197, 617
BtgI CCRYGG 2 cut(s) 126, 622
BtsIMutI CAGTG 1 cut(s) 468
Cac8I GCNNGC 1 cut(s) 477
CciI TCATGA 1 cut(s) 851
CfoI GCGC 3 cut(s) 111, 237, 753
Cfr13I GGNCC 1 cut(s) 388
CsiI ACCWGGT 1 cut(s) 405
CviAII CATG 5 cut(s) 127, 490, 536, 623, 852
DdeI CTNAG 6 cut(s) 210, 384, 508, 743, 755, 765
DinI GGCGCC 1 cut(s) 236
DpnI GATC 2 cut(s) 401, 546
DpnII GATC 2 cut(s) 399, 544
Eam1104I CTCTTC 3 cut(s) 89, 602, 690
EarI CTCTTC 3 cut(s) 89, 602, 690
EciI GGCGGA 1 cut(s) 719
Eco130I CCWWGG 2 cut(s) 126, 622
Eco31I GGTCTC 1 cut(s) 643
Eco47I GGWCC 1 cut(s) 388
Eco57I CTGAAG 2 cut(s) 82, 714
Eco81I CCTNAGG 1 cut(s) 755
Eco88I CYCGRG 3 cut(s) 191, 262, 513
EcoO109I RGGNCCY 1 cut(s) 388
EcoRII CCWGG 1 cut(s) 405
EcoT14I CCWWGG 2 cut(s) 126, 622
EgeI GGCGCC 1 cut(s) 236
EheI GGCGCC 1 cut(s) 236
ErhI CCWWGG 2 cut(s) 126, 622
FaeI CATG 5 cut(s) 130, 493, 539, 626, 855
FaiI YATR 9 cut(s) 128, 152, 366, 431, 491, 531, 537, 624, 853
FaqI GGGAC 1 cut(s) 296
FatI CATG 5 cut(s) 126, 489, 535, 622, 851
FblI GTMKAC 2 cut(s) 151, 556
Fnu4HI GCNGC 4 cut(s) 49, 112, 233, 480
Fsp4HI GCNGC 4 cut(s) 49, 112, 233, 480
FspI TGCGCA 1 cut(s) 110
GlaI GCGC 3 cut(s) 110, 236, 752
GluI GCNGC 4 cut(s) 49, 112, 233, 480
GsaI CCCAGC 1 cut(s) 570
GsuI CTGGAG 2 cut(s) 256, 776
HaeII RGCGCY 2 cut(s) 238, 754
HaeIII GGCC 2 cut(s) 197, 617
HhaI GCGC 3 cut(s) 111, 237, 753
Hin1I GRCGYC 1 cut(s) 235
Hin1II CATG 5 cut(s) 130, 493, 539, 626, 855
Hin6I GCGC 3 cut(s) 109, 235, 751
HinP1I GCGC 3 cut(s) 109, 235, 751
HinfI GANTC 4 cut(s) 267, 296, 588, 597
HphI GGTGA 1 cut(s) 842
Hpy166II GTNNAC 3 cut(s) 152, 557, 833
Hpy188I TCNGA 4 cut(s) 75, 213, 295, 804
Hpy188III TCNNGA 4 cut(s) 264, 386, 548, 852
Hpy8I GTNNAC 3 cut(s) 152, 557, 833
HpyCH4III ACNGT 1 cut(s) 554
HpyCH4V TGCA 2 cut(s) 482, 524
HpyF10VI GCNNNNNNNGC 2 cut(s) 710, 757
HpyF3I CTNAG 6 cut(s) 210, 384, 508, 743, 755, 765
Hsp92I GRCGYC 1 cut(s) 235
Hsp92II CATG 5 cut(s) 130, 493, 539, 626, 855
HspAI GCGC 3 cut(s) 109, 235, 751
KasI GGCGCC 1 cut(s) 234
Kzo9I GATC 2 cut(s) 399, 544
Lsp1109I GCAGC 2 cut(s) 123, 466
LweI GCATC 2 cut(s) 511, 581
MabI ACCWGGT 1 cut(s) 405
MaeIII GTNAC 3 cut(s) 379, 450, 463
MalI GATC 2 cut(s) 401, 546
MboI GATC 2 cut(s) 399, 544
MboII GAAGA 4 cut(s) 76, 452, 619, 707
MfeI CAATTG 1 cut(s) 455
MflI RGATCY 1 cut(s) 544
MluCI AATT 6 cut(s) 89, 145, 455, 639, 730, 818
Mly113I GGCGCC 1 cut(s) 235
MmeI TCCRAC 1 cut(s) 522
MseI TTAA 4 cut(s) 329, 371, 642, 677
MspA1I CMGCKG 1 cut(s) 48
MspR9I CCNGG 1 cut(s) 407
MunI CAATTG 1 cut(s) 455
MvaI CCWGG 1 cut(s) 407
MvnI CGCG 1 cut(s) 64
MwoI GCNNNNNNNGC 2 cut(s) 710, 757
NarI GGCGCC 1 cut(s) 235
NcoI CCATGG 2 cut(s) 126, 622
NdeII GATC 2 cut(s) 399, 544
NlaIII CATG 5 cut(s) 130, 493, 539, 626, 855
NlaIV GGNNCC 3 cut(s) 236, 390, 546
NmuCI GTSAC 2 cut(s) 450, 463
NsbI TGCGCA 1 cut(s) 110
PaeR7I CTCGAG 2 cut(s) 191, 513
PagI TCATGA 1 cut(s) 851
PcsI WCGNNNNNNNCGW 2 cut(s) 299, 430
PfeI GAWTC 4 cut(s) 267, 296, 588, 597
PflMI CCANNNNNTGG 2 cut(s) 127, 667
PkrI GCNGC 4 cut(s) 50, 113, 234, 481
PluTI GGCGCC 1 cut(s) 238
PpuMI RGGWCCY 1 cut(s) 388
PsiI TTATAA 1 cut(s) 531
Psp5II RGGWCCY 1 cut(s) 388
Psp6I CCWGG 1 cut(s) 405
PspFI CCCAGC 1 cut(s) 566
PspGI CCWGG 1 cut(s) 405
PspN4I GGNNCC 3 cut(s) 236, 390, 546
PspPI GGNCC 1 cut(s) 388
PspPPI RGGWCCY 1 cut(s) 388
PspXI VCTCGAGB 2 cut(s) 191, 513
PsuI RGATCY 1 cut(s) 544
SaqAI TTAA 4 cut(s) 329, 371, 642, 677
SatI GCNGC 4 cut(s) 49, 112, 233, 480
Sau3AI GATC 2 cut(s) 399, 544
Sau96I GGNCC 1 cut(s) 388
ScrFI CCNGG 1 cut(s) 407
SexAI ACCWGGT 1 cut(s) 405
SfaNI GCATC 2 cut(s) 511, 581
SfoI GGCGCC 1 cut(s) 236
Sfr274I CTCGAG 2 cut(s) 191, 513
SinI GGWCC 1 cut(s) 388
SlaI CTCGAG 2 cut(s) 191, 513
SmlI CTYRAG 2 cut(s) 191, 513
SmoI CTYRAG 2 cut(s) 191, 513
Sse9I AATT 6 cut(s) 89, 145, 455, 639, 730, 818
SsiI CCGC 5 cut(s) 48, 62, 232, 338, 704
SspDI GGCGCC 1 cut(s) 234
SspI AATATT 1 cut(s) 784
StyD4I CCNGG 1 cut(s) 405
StyI CCWWGG 2 cut(s) 126, 622
TaaI ACNGT 1 cut(s) 554
TaqI TCGA 5 cut(s) 10, 166, 192, 402, 514
TasI AATT 6 cut(s) 89, 145, 455, 639, 730, 818
TauI GCSGC 2 cut(s) 51, 235
TfiI GAWTC 4 cut(s) 267, 296, 588, 597
Tru1I TTAA 4 cut(s) 329, 371, 642, 677
Tru9I TTAA 4 cut(s) 329, 371, 642, 677
TscAI CASTG 1 cut(s) 468
TseFI GTSAC 2 cut(s) 450, 463
TseI GCWGC 2 cut(s) 111, 479
Tsp45I GTSAC 2 cut(s) 450, 463
TspDTI ATGAA 1 cut(s) 840
TspGWI ACGGA 1 cut(s) 333
TspRI CASTG 1 cut(s) 468
Van91I CCANNNNNTGG 2 cut(s) 127, 667
VpaK11BI GGWCC 1 cut(s) 388
XapI RAATTY 1 cut(s) 818
XhoI CTCGAG 2 cut(s) 191, 513
XmiI GTMKAC 2 cut(s) 151, 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.