RLG00000010181

Belongs to the universal ribosomal protein uL22 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0016302
Physical Location & Seq
Reverse (-)
63930237 .. 63933014
2778 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010181

Sequence Viewer

Length: 903 bp
ATGGTCCACTTTGTAAGTTTACTAAAATTGAGAGTCCAGTTTCCTTGTGGCTCCAATATTCAGATCAAAGGGCGCCCTGCAATTCTCTCTTCCTCCGCCGCCAGCGGCGACCCACCACCCTCCGGACCACCTCTTCTAATTCGCTTCAGGCTATTGCGCAGTTCATTCCAAGCCATGGTCGGTTGGCAAAGGAATTGTATACAATCCCTAACTCGACATTTTGGGAAAGCAAGACTACTCGAGGCCACTTCAACTCCTCAGACCCAACAATCACTCTTGCGGCGCCCTTTTTATCACTACTCTCAACACTCGGGAATCTCCAGTTCAAGGAACCTACTTGCGGATACCTCGTCTAATGTCCCATCTCCCAATACCTTAAATCCACCGCCTCCGTCTTTGAAACAAGTTCAATATGTCTTAAAGGGCGTAACTCAGGACCCTAACAAGATCGACCTGGTTGGCAAACTGGTTCGTGGTATGCGTGTTGAAGATGTGTTGTCACAATTGTCAGTGACAGACAAGCAAGCTGCAAAAACCGTGTATCAGGCTATTTACTCAGCTCGAGCAGATGCAACTTATAAACATGGTTTGGATCCAGATCGTCTACTTGTTGCTGGGGCATCTATTGGAAAGGGATTCGTGGGATTCAGCAAGAAGAGACTGGCCTACCATGGTAAAGGCAATGGAATTAAAGTGAGACCAAAACACCAACTGATGGTGGTTTTAAGGGAGATTGCCCCTGAAGAGGAGGCGGAGATAGCCAGACAAAGAGCCGACAATTTTCTTTATCTCAGTAAGCGCCTCAGGCTCACTAAGGAGGAAAATAAGAATATTCCTCTCCAGCTTATTCGGAAAAACAAAGGCAAATTCAGTAATGGTGAACCAAGTGGTATGGCTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L22

Protein Analysis

301

Amino Acids

33.22

Weight (kDa)

10.4

Isoelectric Point (pI)

47.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L22 PF00237 141 - 232 9.7e-15 Ribosomal protein L22p/L17e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016302)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g00560
malus_domestica MD03G1130200.v1.1 MD06G1011100.v1.1
prunus_persica Prupe.2G035300_v2.0.a1 Prupe.7G027600_v2.0.a1
pyrus_communis pycom06g00910
rosa_chinensis RchiOBHm_Chr4g0386011
rosa_laevigata RLG00000010181
rosa_multiflora Rmu_sc0000472.1_g000020
rosa_rugosa Rorug03G0306200
rosa_samantha Rh4AG010000 Rh4BG007000 Rh4CG010700 Rh4DG008100
rosa_wichuraiana Rw4G000140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 579
Acc16I TGCGCA 1 cut(s) 158
AccB1I GGYRCC 2 cut(s) 72, 282
AccB7I CCANNNNNTGG 2 cut(s) 175, 715
AccI GTMKAC 2 cut(s) 199, 604
AccIII TCCGGA 1 cut(s) 122
AciI CCGC 7 cut(s) 96, 99, 105, 280, 341, 386, 752
AclWI GGATC 2 cut(s) 587, 600
AcsI RAATTY 1 cut(s) 866
AcuI CTGAAG 2 cut(s) 130, 762
AcyI GRCGYC 2 cut(s) 73, 283
AfiI CCNNNNNNNGG 6 cut(s) 122, 175, 327, 340, 715, 745
AgsI TTSAA 5 cut(s) 252, 327, 400, 410, 488
AjnI CCWGG 1 cut(s) 453
AluBI AGCT 3 cut(s) 527, 560, 844
AluI AGCT 3 cut(s) 527, 560, 844
Alw26I GTCTC 2 cut(s) 652, 691
AlwI GGATC 2 cut(s) 587, 600
Ama87I CYCGRG 3 cut(s) 239, 310, 561
Aor13HI TCCGGA 1 cut(s) 122
AoxI GGCC 2 cut(s) 243, 663
ApeKI GCWGC 1 cut(s) 527
ApoI RAATTY 1 cut(s) 866
AspLEI GCGC 4 cut(s) 75, 159, 285, 801
AspS9I GGNCC 3 cut(s) 4, 125, 436
AsuHPI GGTGA 1 cut(s) 890
AvaI CYCGRG 3 cut(s) 239, 310, 561
AvaII GGWCC 3 cut(s) 4, 125, 436
AxyI CCTNAGG 1 cut(s) 803
BamHI GGATCC 1 cut(s) 592
BanI GGYRCC 2 cut(s) 72, 282
BbvI GCAGC 1 cut(s) 514
BccI CCATC 2 cut(s) 370, 709
BciT130I CCWGG 1 cut(s) 455
BciVI GTATCC 1 cut(s) 337
BcoDI GTCTC 2 cut(s) 652, 691
BfoI RGCGCY 3 cut(s) 76, 286, 802
BfuI GTATCC 1 cut(s) 337
BisI GCNGC 4 cut(s) 99, 106, 281, 528
BlsI GCNGC 4 cut(s) 100, 107, 282, 529
Bme1390I CCNGG 1 cut(s) 455
Bme18I GGWCC 3 cut(s) 4, 125, 436
BmeT110I CYCGRG 3 cut(s) 239, 310, 561
BmgT120I GGNCC 3 cut(s) 4, 125, 436
BmiI GGNNCC 6 cut(s) 52, 74, 284, 332, 438, 594
BmrFI CCNGG 1 cut(s) 455
BmsI GCATC 2 cut(s) 559, 629
BpmI CTGGAG 2 cut(s) 304, 824
BsaBI GATNNNNATC 1 cut(s) 597
BsaHI GRCGYC 2 cut(s) 73, 283
BsaI GGTCTC 1 cut(s) 691
BsaJI CCNNGG 2 cut(s) 174, 670
BsaWI WCCGGW 1 cut(s) 122
BsaXI ACNNNNNCTCC 2 cut(s) 238, 268
Bsc4I CCNNNNNNNGG 6 cut(s) 122, 175, 327, 340, 715, 745
Bse1I ACTGG 4 cut(s) 37, 321, 471, 666
Bse21I CCTNAGG 1 cut(s) 803
Bse3DI GCAATG 1 cut(s) 688
Bse8I GATNNNNATC 1 cut(s) 597
BseAI TCCGGA 1 cut(s) 122
BseBI CCWGG 1 cut(s) 455
BseDI CCNNGG 2 cut(s) 174, 670
BseJI GATNNNNATC 1 cut(s) 597
BseLI CCNNNNNNNGG 6 cut(s) 122, 175, 327, 340, 715, 745
BseMI GCAATG 1 cut(s) 688
BseMII CTCAG 5 cut(s) 272, 446, 570, 805, 817
BseNI ACTGG 4 cut(s) 37, 321, 471, 666
BseRI GAGGAG 2 cut(s) 246, 761
BseXI GCAGC 1 cut(s) 514
BseYI CCCAGC 1 cut(s) 614
BshFI GGCC 2 cut(s) 245, 665
BshNI GGYRCC 2 cut(s) 72, 282
BsiHKCI CYCGRG 3 cut(s) 239, 310, 561
BsiSI CCGG 1 cut(s) 123
BslFI GGGAC 1 cut(s) 344
BslI CCNNNNNNNGG 6 cut(s) 122, 175, 327, 340, 715, 745
BsmAI GTCTC 2 cut(s) 652, 691
BsmFI GGGAC 1 cut(s) 344
BsnI GGCC 2 cut(s) 245, 665
Bso31I GGTCTC 1 cut(s) 691
BsoBI CYCGRG 3 cut(s) 239, 310, 561
Bsp13I TCCGGA 1 cut(s) 122
Bsp143I GATC 4 cut(s) 63, 447, 592, 598
Bsp19I CCATGG 2 cut(s) 174, 670
BspACI CCGC 7 cut(s) 96, 99, 105, 280, 341, 386, 752
BspANI GGCC 2 cut(s) 245, 665
BspCNI CTCAG 5 cut(s) 271, 445, 569, 804, 816
BspEI TCCGGA 1 cut(s) 122
BspHI TCATGA 1 cut(s) 899
BspLI GGNNCC 6 cut(s) 52, 74, 284, 332, 438, 594
BspPI GGATC 2 cut(s) 587, 600
BspT107I GGYRCC 2 cut(s) 72, 282
BspTNI GGTCTC 1 cut(s) 691
BsrDI GCAATG 1 cut(s) 688
BsrI ACTGG 4 cut(s) 37, 321, 471, 666
BssECI CCNNGG 2 cut(s) 174, 670
BssMI GATC 4 cut(s) 63, 447, 592, 598
BssNAI GTATAC 1 cut(s) 200
BssNI GRCGYC 2 cut(s) 73, 283
BssT1I CCWWGG 2 cut(s) 174, 670
Bst1107I GTATAC 1 cut(s) 200
Bst2UI CCWGG 1 cut(s) 455
Bst4CI ACNGT 1 cut(s) 538
Bst6I CTCTTC 4 cut(s) 94, 138, 650, 738
BstACI GRCGYC 2 cut(s) 73, 283
BstC8I GCNNGC 2 cut(s) 103, 525
BstDEI CTNAG 6 cut(s) 258, 432, 556, 791, 803, 813
BstDSI CCRYGG 2 cut(s) 174, 670
BstH2I RGCGCY 3 cut(s) 76, 286, 802
BstHHI GCGC 4 cut(s) 75, 159, 285, 801
BstKTI GATC 4 cut(s) 66, 450, 595, 601
BstMAI GTCTC 2 cut(s) 652, 691
BstMBI GATC 4 cut(s) 63, 447, 592, 598
BstMWI GCNNNNNNNGC 2 cut(s) 758, 805
BstNI CCWGG 1 cut(s) 455
BstSCI CCNGG 1 cut(s) 453
BstV1I GCAGC 1 cut(s) 514
BstX2I RGATCY 1 cut(s) 592
BstYI RGATCY 1 cut(s) 592
BstZ17I GTATAC 1 cut(s) 200
Bsu36I CCTNAGG 1 cut(s) 803
BsuI GTATCC 1 cut(s) 337
BsuRI GGCC 2 cut(s) 245, 665
BtgI CCRYGG 2 cut(s) 174, 670
BtsIMutI CAGTG 1 cut(s) 516
Cac8I GCNNGC 2 cut(s) 103, 525
CciI TCATGA 1 cut(s) 899
CfoI GCGC 4 cut(s) 75, 159, 285, 801
Cfr13I GGNCC 3 cut(s) 4, 125, 436
CsiI ACCWGGT 1 cut(s) 453
CviAII CATG 4 cut(s) 175, 584, 671, 900
DdeI CTNAG 6 cut(s) 258, 432, 556, 791, 803, 813
DinI GGCGCC 2 cut(s) 74, 284
DpnI GATC 4 cut(s) 65, 449, 594, 600
DpnII GATC 4 cut(s) 63, 447, 592, 598
Eam1104I CTCTTC 4 cut(s) 94, 138, 650, 738
EarI CTCTTC 4 cut(s) 94, 138, 650, 738
EciI GGCGGA 2 cut(s) 85, 767
Eco130I CCWWGG 2 cut(s) 174, 670
Eco31I GGTCTC 1 cut(s) 691
Eco47I GGWCC 3 cut(s) 4, 125, 436
Eco57I CTGAAG 2 cut(s) 130, 762
Eco81I CCTNAGG 1 cut(s) 803
Eco88I CYCGRG 3 cut(s) 239, 310, 561
EcoO109I RGGNCCY 1 cut(s) 436
EcoRII CCWGG 1 cut(s) 453
EcoT14I CCWWGG 2 cut(s) 174, 670
EgeI GGCGCC 2 cut(s) 74, 284
EheI GGCGCC 2 cut(s) 74, 284
ErhI CCWWGG 2 cut(s) 174, 670
FaeI CATG 4 cut(s) 178, 587, 674, 903
FaiI YATR 9 cut(s) 176, 200, 414, 479, 579, 585, 672, 893, 901
FaqI GGGAC 1 cut(s) 344
FatI CATG 4 cut(s) 174, 583, 670, 899
FblI GTMKAC 2 cut(s) 199, 604
Fnu4HI GCNGC 4 cut(s) 99, 106, 281, 528
Fsp4HI GCNGC 4 cut(s) 99, 106, 281, 528
FspI TGCGCA 1 cut(s) 158
GlaI GCGC 4 cut(s) 74, 158, 284, 800
GluI GCNGC 4 cut(s) 99, 106, 281, 528
GsaI CCCAGC 1 cut(s) 618
GsuI CTGGAG 2 cut(s) 304, 824
HaeII RGCGCY 3 cut(s) 76, 286, 802
HaeIII GGCC 2 cut(s) 245, 665
HapII CCGG 1 cut(s) 123
HhaI GCGC 4 cut(s) 75, 159, 285, 801
Hin1I GRCGYC 2 cut(s) 73, 283
Hin1II CATG 4 cut(s) 178, 587, 674, 903
Hin6I GCGC 4 cut(s) 73, 157, 283, 799
HinP1I GCGC 4 cut(s) 73, 157, 283, 799
HinfI GANTC 4 cut(s) 33, 315, 636, 645
HpaII CCGG 1 cut(s) 123
HphI GGTGA 1 cut(s) 890
Hpy166II GTNNAC 5 cut(s) 7, 20, 200, 605, 881
Hpy188I TCNGA 3 cut(s) 63, 261, 852
Hpy188III TCNNGA 5 cut(s) 123, 312, 434, 596, 900
Hpy8I GTNNAC 5 cut(s) 7, 20, 200, 605, 881
HpyCH4III ACNGT 1 cut(s) 538
HpyCH4V TGCA 3 cut(s) 80, 530, 572
HpyF10VI GCNNNNNNNGC 2 cut(s) 758, 805
HpyF3I CTNAG 6 cut(s) 258, 432, 556, 791, 803, 813
Hsp92I GRCGYC 2 cut(s) 73, 283
Hsp92II CATG 4 cut(s) 178, 587, 674, 903
HspAI GCGC 4 cut(s) 73, 157, 283, 799
KasI GGCGCC 2 cut(s) 72, 282
Kpn2I TCCGGA 1 cut(s) 122
Kzo9I GATC 4 cut(s) 63, 447, 592, 598
LmnI GCTCC 1 cut(s) 56
Lsp1109I GCAGC 1 cut(s) 514
LweI GCATC 2 cut(s) 559, 629
MabI ACCWGGT 1 cut(s) 453
MaeIII GTNAC 3 cut(s) 427, 498, 511
MalI GATC 4 cut(s) 65, 449, 594, 600
MboI GATC 4 cut(s) 63, 447, 592, 598
MboII GAAGA 5 cut(s) 81, 125, 500, 667, 755
MfeI CAATTG 1 cut(s) 503
MflI RGATCY 1 cut(s) 592
MluCI AATT 8 cut(s) 26, 81, 138, 193, 503, 687, 778, 866
Mly113I GGCGCC 2 cut(s) 73, 283
MlyI GAGTC 1 cut(s) 42
MroI TCCGGA 1 cut(s) 122
MseI TTAA 4 cut(s) 377, 419, 690, 725
MspA1I CMGCKG 1 cut(s) 105
MspI CCGG 1 cut(s) 123
MspR9I CCNGG 1 cut(s) 455
MunI CAATTG 1 cut(s) 503
MvaI CCWGG 1 cut(s) 455
MwoI GCNNNNNNNGC 2 cut(s) 758, 805
NarI GGCGCC 2 cut(s) 73, 283
NcoI CCATGG 2 cut(s) 174, 670
NdeII GATC 4 cut(s) 63, 447, 592, 598
NlaIII CATG 4 cut(s) 178, 587, 674, 903
NlaIV GGNNCC 6 cut(s) 52, 74, 284, 332, 438, 594
NmuCI GTSAC 2 cut(s) 498, 511
NsbI TGCGCA 1 cut(s) 158
PaeR7I CTCGAG 2 cut(s) 239, 561
PagI TCATGA 1 cut(s) 899
PcsI WCGNNNNNNNCGW 1 cut(s) 478
PfeI GAWTC 3 cut(s) 315, 636, 645
PflMI CCANNNNNTGG 2 cut(s) 175, 715
PkrI GCNGC 4 cut(s) 100, 107, 282, 529
PleI GAGTC 1 cut(s) 41
PluTI GGCGCC 2 cut(s) 76, 286
PpsI GAGTC 1 cut(s) 41
PpuMI RGGWCCY 1 cut(s) 436
PsiI TTATAA 1 cut(s) 579
Psp5II RGGWCCY 1 cut(s) 436
Psp6I CCWGG 1 cut(s) 453
PspFI CCCAGC 1 cut(s) 614
PspGI CCWGG 1 cut(s) 453
PspN4I GGNNCC 6 cut(s) 52, 74, 284, 332, 438, 594
PspPI GGNCC 3 cut(s) 4, 125, 436
PspPPI RGGWCCY 1 cut(s) 436
PspXI VCTCGAGB 2 cut(s) 239, 561
PsuI RGATCY 1 cut(s) 592
SaqAI TTAA 4 cut(s) 377, 419, 690, 725
SatI GCNGC 4 cut(s) 99, 106, 281, 528
Sau3AI GATC 4 cut(s) 63, 447, 592, 598
Sau96I GGNCC 3 cut(s) 4, 125, 436
SchI GAGTC 1 cut(s) 42
ScrFI CCNGG 1 cut(s) 455
SetI ASST 8 cut(s) 133, 336, 350, 377, 456, 529, 562, 846
SexAI ACCWGGT 1 cut(s) 453
SfaNI GCATC 2 cut(s) 559, 629
SfoI GGCGCC 2 cut(s) 74, 284
Sfr274I CTCGAG 2 cut(s) 239, 561
SinI GGWCC 3 cut(s) 4, 125, 436
SlaI CTCGAG 2 cut(s) 239, 561
SmlI CTYRAG 2 cut(s) 239, 561
SmoI CTYRAG 2 cut(s) 239, 561
Sse9I AATT 8 cut(s) 26, 81, 138, 193, 503, 687, 778, 866
SsiI CCGC 7 cut(s) 96, 99, 105, 280, 341, 386, 752
SspDI GGCGCC 2 cut(s) 72, 282
SspI AATATT 2 cut(s) 58, 832
StyD4I CCNGG 1 cut(s) 453
StyI CCWWGG 2 cut(s) 174, 670
TaaI ACNGT 1 cut(s) 538
TaqI TCGA 4 cut(s) 214, 240, 450, 562
TasI AATT 8 cut(s) 26, 81, 138, 193, 503, 687, 778, 866
TauI GCSGC 3 cut(s) 101, 108, 283
TfiI GAWTC 3 cut(s) 315, 636, 645
Tru1I TTAA 4 cut(s) 377, 419, 690, 725
Tru9I TTAA 4 cut(s) 377, 419, 690, 725
TscAI CASTG 1 cut(s) 516
TseFI GTSAC 2 cut(s) 498, 511
TseI GCWGC 1 cut(s) 527
Tsp45I GTSAC 2 cut(s) 498, 511
TspDTI ATGAA 2 cut(s) 153, 888
TspGWI ACGGA 1 cut(s) 381
TspRI CASTG 1 cut(s) 516
Van91I CCANNNNNTGG 2 cut(s) 175, 715
VpaK11BI GGWCC 3 cut(s) 4, 125, 436
XapI RAATTY 1 cut(s) 866
XcmI CCANNNNNNNNNTGG 1 cut(s) 44
XhoI CTCGAG 2 cut(s) 239, 561
XmiI GTMKAC 2 cut(s) 199, 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.