Rw4G000140

Belongs to the universal ribosomal protein uL22 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0016302
Physical Location & Seq
Reverse (-)
263258 .. 265529
2272 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G000140.1

Sequence Viewer

Length: 588 bp
ATGGTCGGTTGGCAAGGAATTGGAATCTCCAGTTCAAGGAACTTACTTGCGGATTCCTCGTCTAATGTCCCATCTCCCAATACCTTAAACCCACCGCCTCCGTCTTTGAAACAAGTTCAATATGTCTTAAAGGGCGTAACTCAGGACCCTAACAAGATCGACCTGGTTGGCAAACTGGTTCGTGGTATGCGTGTTGAAGATGTGTTGTCACAATTGTCAGTGACAGACAAGCAAGCTGCAAAAACCATGTATCAGGCTATTTACTCAGCTCGAGCAGATGCAACTTATAAACATGGGTTGGATCCAGACCGTCTTCTTGGATTCGTGGGATTCAGCAAGAAGAGACTGGCCTACCATGGTAAAGGCAATGGAATTAAAGTGAGACCAAAACACCAACTGATGGTGGTTTTAAGGGAGATTGCCCCTGAAGAGGAGGCGGAGATAGCCAGACAAAGAGCCGACAATTTTCTTTATCTCAGTAAGCGCCTCAGGCTCACTAAGGAGGAAAATAAGAATATTCCTCTCCAGCTTATTCGGAAAAACAAAGGCAAATTTAGTGATGGTGAACCAAGTGGTATGGCTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L22

Protein Analysis

195

Amino Acids

21.64

Weight (kDa)

9.92

Isoelectric Point (pI)

41.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L22 PF00237 44 - 105 3.2e-10 Ribosomal protein L22p/L17e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016302)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g00560
malus_domestica MD03G1130200.v1.1 MD06G1011100.v1.1
prunus_persica Prupe.2G035300_v2.0.a1 Prupe.7G027600_v2.0.a1
pyrus_communis pycom06g00910
rosa_chinensis RchiOBHm_Chr4g0386011
rosa_laevigata RLG00000010181
rosa_multiflora Rmu_sc0000472.1_g000020
rosa_rugosa Rorug03G0306200
rosa_samantha Rh4AG010000 Rh4BG007000 Rh4CG010700 Rh4DG008100
rosa_wichuraiana Rw4G000140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 288
AccB7I CCANNNNNTGG 1 cut(s) 400
AciI CCGC 3 cut(s) 50, 95, 437
AclWI GGATC 2 cut(s) 296, 309
AcsI RAATTY 1 cut(s) 551
AcuI CTGAAG 1 cut(s) 447
AfiI CCNNNNNNNGG 3 cut(s) 36, 400, 430
AgsI TTSAA 4 cut(s) 36, 109, 119, 197
AjnI CCWGG 1 cut(s) 162
AluBI AGCT 3 cut(s) 236, 269, 529
AluI AGCT 3 cut(s) 236, 269, 529
Alw26I GTCTC 2 cut(s) 337, 376
AlwI GGATC 2 cut(s) 296, 309
Ama87I CYCGRG 1 cut(s) 270
AoxI GGCC 1 cut(s) 348
ApeKI GCWGC 1 cut(s) 236
ApoI RAATTY 1 cut(s) 551
AspLEI GCGC 1 cut(s) 486
AspS9I GGNCC 1 cut(s) 145
AsuHPI GGTGA 1 cut(s) 575
AvaI CYCGRG 1 cut(s) 270
AvaII GGWCC 1 cut(s) 145
AxyI CCTNAGG 1 cut(s) 488
BamHI GGATCC 1 cut(s) 301
BbsI GAAGAC 1 cut(s) 305
BbvI GCAGC 1 cut(s) 223
BccI CCATC 3 cut(s) 79, 394, 554
BciT130I CCWGG 1 cut(s) 164
BcoDI GTCTC 2 cut(s) 337, 376
BfoI RGCGCY 1 cut(s) 487
BisI GCNGC 1 cut(s) 237
BlsI GCNGC 1 cut(s) 238
Bme1390I CCNGG 1 cut(s) 164
Bme18I GGWCC 1 cut(s) 145
BmeT110I CYCGRG 1 cut(s) 270
BmgT120I GGNCC 1 cut(s) 145
BmiI GGNNCC 2 cut(s) 147, 303
BmrFI CCNGG 1 cut(s) 164
BmsI GCATC 1 cut(s) 268
BpiI GAAGAC 1 cut(s) 305
BpmI CTGGAG 2 cut(s) 13, 509
BsaI GGTCTC 1 cut(s) 376
BsaJI CCNNGG 1 cut(s) 355
Bsc4I CCNNNNNNNGG 3 cut(s) 36, 400, 430
Bse1I ACTGG 3 cut(s) 30, 180, 351
Bse21I CCTNAGG 1 cut(s) 488
Bse3DI GCAATG 1 cut(s) 373
BseBI CCWGG 1 cut(s) 164
BseDI CCNNGG 1 cut(s) 355
BseLI CCNNNNNNNGG 3 cut(s) 36, 400, 430
BseMI GCAATG 1 cut(s) 373
BseMII CTCAG 4 cut(s) 155, 279, 490, 502
BseNI ACTGG 3 cut(s) 30, 180, 351
BseRI GAGGAG 1 cut(s) 446
BseXI GCAGC 1 cut(s) 223
BshFI GGCC 1 cut(s) 350
BsiHKCI CYCGRG 1 cut(s) 270
BslFI GGGAC 1 cut(s) 53
BslI CCNNNNNNNGG 3 cut(s) 36, 400, 430
BsmAI GTCTC 2 cut(s) 337, 376
BsmFI GGGAC 1 cut(s) 53
BsnI GGCC 1 cut(s) 350
Bso31I GGTCTC 1 cut(s) 376
BsoBI CYCGRG 1 cut(s) 270
Bsp143I GATC 2 cut(s) 156, 301
Bsp19I CCATGG 1 cut(s) 355
BspACI CCGC 3 cut(s) 50, 95, 437
BspANI GGCC 1 cut(s) 350
BspCNI CTCAG 4 cut(s) 154, 278, 489, 501
BspHI TCATGA 1 cut(s) 584
BspLI GGNNCC 2 cut(s) 147, 303
BspPI GGATC 2 cut(s) 296, 309
BspTNI GGTCTC 1 cut(s) 376
BsrDI GCAATG 1 cut(s) 373
BsrI ACTGG 3 cut(s) 30, 180, 351
BssECI CCNNGG 1 cut(s) 355
BssMI GATC 2 cut(s) 156, 301
BssT1I CCWWGG 1 cut(s) 355
Bst2UI CCWGG 1 cut(s) 164
Bst4CI ACNGT 1 cut(s) 311
Bst6I CTCTTC 2 cut(s) 335, 423
BstC8I GCNNGC 1 cut(s) 234
BstDEI CTNAG 5 cut(s) 141, 265, 476, 488, 498
BstDSI CCRYGG 1 cut(s) 355
BstH2I RGCGCY 1 cut(s) 487
BstHHI GCGC 1 cut(s) 486
BstKTI GATC 2 cut(s) 159, 304
BstMAI GTCTC 2 cut(s) 337, 376
BstMBI GATC 2 cut(s) 156, 301
BstMWI GCNNNNNNNGC 2 cut(s) 443, 490
BstNI CCWGG 1 cut(s) 164
BstSCI CCNGG 1 cut(s) 162
BstV1I GCAGC 1 cut(s) 223
BstV2I GAAGAC 1 cut(s) 305
BstX2I RGATCY 1 cut(s) 301
BstYI RGATCY 1 cut(s) 301
Bsu36I CCTNAGG 1 cut(s) 488
BsuRI GGCC 1 cut(s) 350
BtgI CCRYGG 1 cut(s) 355
BtsIMutI CAGTG 1 cut(s) 225
Cac8I GCNNGC 1 cut(s) 234
CciI TCATGA 1 cut(s) 584
CfoI GCGC 1 cut(s) 486
Cfr13I GGNCC 1 cut(s) 145
CsiI ACCWGGT 1 cut(s) 162
CviAII CATG 4 cut(s) 247, 293, 356, 585
CviJI RGCY 9 cut(s) 236, 257, 269, 350, 446, 458, 493, 529, 581
CviKI_1 RGCY 9 cut(s) 236, 257, 269, 350, 446, 458, 493, 529, 581
DdeI CTNAG 5 cut(s) 141, 265, 476, 488, 498
DpnI GATC 2 cut(s) 158, 303
DpnII GATC 2 cut(s) 156, 301
Eam1104I CTCTTC 2 cut(s) 335, 423
EarI CTCTTC 2 cut(s) 335, 423
EciI GGCGGA 1 cut(s) 452
Eco130I CCWWGG 1 cut(s) 355
Eco31I GGTCTC 1 cut(s) 376
Eco47I GGWCC 1 cut(s) 145
Eco57I CTGAAG 1 cut(s) 447
Eco81I CCTNAGG 1 cut(s) 488
Eco88I CYCGRG 1 cut(s) 270
EcoO109I RGGNCCY 1 cut(s) 145
EcoRII CCWGG 1 cut(s) 162
EcoT14I CCWWGG 1 cut(s) 355
ErhI CCWWGG 1 cut(s) 355
FaeI CATG 4 cut(s) 250, 296, 359, 588
FaiI YATR 8 cut(s) 123, 188, 248, 288, 294, 357, 578, 586
FaqI GGGAC 1 cut(s) 53
FatI CATG 4 cut(s) 246, 292, 355, 584
Fnu4HI GCNGC 1 cut(s) 237
Fsp4HI GCNGC 1 cut(s) 237
GlaI GCGC 1 cut(s) 485
GluI GCNGC 1 cut(s) 237
GsuI CTGGAG 2 cut(s) 13, 509
HaeII RGCGCY 1 cut(s) 487
HaeIII GGCC 1 cut(s) 350
HhaI GCGC 1 cut(s) 486
Hin1II CATG 4 cut(s) 250, 296, 359, 588
Hin6I GCGC 1 cut(s) 484
HinP1I GCGC 1 cut(s) 484
HinfI GANTC 4 cut(s) 24, 53, 321, 330
HphI GGTGA 1 cut(s) 575
Hpy166II GTNNAC 1 cut(s) 566
Hpy188I TCNGA 1 cut(s) 537
Hpy188III TCNNGA 3 cut(s) 143, 305, 585
Hpy8I GTNNAC 1 cut(s) 566
HpyCH4III ACNGT 1 cut(s) 311
HpyCH4V TGCA 2 cut(s) 239, 281
HpyF10VI GCNNNNNNNGC 2 cut(s) 443, 490
HpyF3I CTNAG 5 cut(s) 141, 265, 476, 488, 498
Hsp92II CATG 4 cut(s) 250, 296, 359, 588
HspAI GCGC 1 cut(s) 484
Kzo9I GATC 2 cut(s) 156, 301
Lsp1109I GCAGC 1 cut(s) 223
LweI GCATC 1 cut(s) 268
MabI ACCWGGT 1 cut(s) 162
MaeIII GTNAC 3 cut(s) 136, 207, 220
MalI GATC 2 cut(s) 158, 303
MboI GATC 2 cut(s) 156, 301
MboII GAAGA 4 cut(s) 209, 305, 352, 440
MfeI CAATTG 1 cut(s) 212
MflI RGATCY 1 cut(s) 301
MluCI AATT 5 cut(s) 18, 212, 372, 463, 551
MmeI TCCRAC 1 cut(s) 279
MnlI CCTC 7 cut(s) 67, 108, 424, 427, 496, 497, 531
MseI TTAA 4 cut(s) 86, 128, 375, 410
MspR9I CCNGG 1 cut(s) 164
MunI CAATTG 1 cut(s) 212
MvaI CCWGG 1 cut(s) 164
MwoI GCNNNNNNNGC 2 cut(s) 443, 490
NcoI CCATGG 1 cut(s) 355
NdeII GATC 2 cut(s) 156, 301
NlaIII CATG 4 cut(s) 250, 296, 359, 588
NlaIV GGNNCC 2 cut(s) 147, 303
NmuCI GTSAC 2 cut(s) 207, 220
PaeR7I CTCGAG 1 cut(s) 270
PagI TCATGA 1 cut(s) 584
PcsI WCGNNNNNNNCGW 1 cut(s) 187
PfeI GAWTC 4 cut(s) 24, 53, 321, 330
PflMI CCANNNNNTGG 1 cut(s) 400
PkrI GCNGC 1 cut(s) 238
PpuMI RGGWCCY 1 cut(s) 145
PsiI TTATAA 1 cut(s) 288
Psp5II RGGWCCY 1 cut(s) 145
Psp6I CCWGG 1 cut(s) 162
PspGI CCWGG 1 cut(s) 162
PspN4I GGNNCC 2 cut(s) 147, 303
PspPI GGNCC 1 cut(s) 145
PspPPI RGGWCCY 1 cut(s) 145
PspXI VCTCGAGB 1 cut(s) 270
PsuI RGATCY 1 cut(s) 301
SaqAI TTAA 4 cut(s) 86, 128, 375, 410
SatI GCNGC 1 cut(s) 237
Sau3AI GATC 2 cut(s) 156, 301
Sau96I GGNCC 1 cut(s) 145
ScrFI CCNGG 1 cut(s) 164
SetI ASST 5 cut(s) 86, 165, 238, 271, 531
SexAI ACCWGGT 1 cut(s) 162
SfaNI GCATC 1 cut(s) 268
Sfr274I CTCGAG 1 cut(s) 270
SinI GGWCC 1 cut(s) 145
SlaI CTCGAG 1 cut(s) 270
SmlI CTYRAG 1 cut(s) 270
SmoI CTYRAG 1 cut(s) 270
Sse9I AATT 5 cut(s) 18, 212, 372, 463, 551
SsiI CCGC 3 cut(s) 50, 95, 437
SspI AATATT 1 cut(s) 517
StyD4I CCNGG 1 cut(s) 162
StyI CCWWGG 1 cut(s) 355
TaaI ACNGT 1 cut(s) 311
TaqI TCGA 2 cut(s) 159, 271
TasI AATT 5 cut(s) 18, 212, 372, 463, 551
TfiI GAWTC 4 cut(s) 24, 53, 321, 330
Tru1I TTAA 4 cut(s) 86, 128, 375, 410
Tru9I TTAA 4 cut(s) 86, 128, 375, 410
TscAI CASTG 1 cut(s) 225
TseFI GTSAC 2 cut(s) 207, 220
TseI GCWGC 1 cut(s) 236
Tsp45I GTSAC 2 cut(s) 207, 220
TspDTI ATGAA 1 cut(s) 573
TspGWI ACGGA 1 cut(s) 90
TspRI CASTG 1 cut(s) 225
Van91I CCANNNNNTGG 1 cut(s) 400
VpaK11BI GGWCC 1 cut(s) 145
XapI RAATTY 1 cut(s) 551
XhoI CTCGAG 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.