Prupe.7G027600_v2.0.a1

Belongs to the universal ribosomal protein uL22 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0016302
Physical Location & Seq
Reverse (-)
5169658 .. 5172151
2494 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G027600.1

Sequence Viewer

Length: 801 bp
ATGGTGGGTTGGCAGAGGAATCTGCAGTCCCTAATCAGTCATATTGGTAAACGAGTATCTGCTGCAAACTTTTCTTCTTCTTCTTCTCATTTTCAGAGACTCTGGAGACCATCTCCTCAAACCATTGCAAGGCCTCTTTATCACTGCTTTCAGCACTTGGGGATTTCCAGTTCAAGGAACTTGCTTGCAGATTCGTCTGTCGAATCACCTCTTCAATCTACGGTGGCTCCTGTCTCTGCATCAGATGGTGAAAGGAATGAAGAACACAACCAGAAACCGCTCTCTAAACCTTCACAAGTTCAATTTGTCTTAAAGGGCATAAAAATGAGCTCTAATAAGGTCAACTTGGTTGCTAAACTGATTCGTGGTATGCGTGTTGAAGATGCATTGTTGCAACTGCAAGTGACAGACAAGCAAGCTGTAAAAACTGTGTATCAGGCTCTTCACTCCGCCCGAGCAGAAGCAACATATAATCATGGGTTGGATCCAGAACGTCTCCTTGTTGCTGGGGCATTTGTTGGAAAGGGATTCTTGGGATTCCACAAGAACAGACTTTACTACCATGGTAAAAGCAACAATGGAACTAAAGTGAGACCAAACAACTACCAATTGATGGTGACGCTGAGGGAGATTACTCCTGAAGAGGAGGGGGAGATAGCCAGGCAGAGAGCCAACAATTTTCTCTATCTCACTAAGCGCCTCCGGCTCACTAAGAAGGAAAATAAGTTTGTTCCTCGCCAGCTTATCAGAAACCACAAAGGCAAAGTCAGTAGTAGTCAGCGAAGTGGTATGACTTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L22

Protein Analysis

267

Amino Acids

29.97

Weight (kDa)

10.47

Isoelectric Point (pI)

53.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016302)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g00560
malus_domestica MD03G1130200.v1.1 MD06G1011100.v1.1
prunus_persica Prupe.2G035300_v2.0.a1 Prupe.7G027600_v2.0.a1
pyrus_communis pycom06g00910
rosa_chinensis RchiOBHm_Chr4g0386011
rosa_laevigata RLG00000010181
rosa_multiflora Rmu_sc0000472.1_g000020
rosa_rugosa Rorug03G0306200
rosa_samantha Rh4AG010000 Rh4BG007000 Rh4CG010700 Rh4DG008100
rosa_wichuraiana Rw4G000140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 613
AccBSI CCGCTC 1 cut(s) 280
AciI CCGC 2 cut(s) 278, 450
AclWI GGATC 2 cut(s) 479, 492
AcuI CTGAAG 1 cut(s) 660
AfiI CCNNNNNNNGG 3 cut(s) 129, 174, 613
AgsI TTSAA 4 cut(s) 174, 215, 302, 380
AjnI CCWGG 1 cut(s) 659
AloI GAACNNNNNNTCC 2 cut(s) 154, 186
AluBI AGCT 3 cut(s) 330, 419, 742
AluI AGCT 3 cut(s) 330, 419, 742
Alw21I GWGCWC 1 cut(s) 332
Alw26I GTCTC 5 cut(s) 91, 100, 238, 500, 586
AlwI GGATC 2 cut(s) 479, 492
Ama87I CYCGRG 1 cut(s) 453
AoxI GGCC 1 cut(s) 131
ApeKI GCWGC 1 cut(s) 62
ArsI GACNNNNNNTTYG 2 cut(s) 750, 782
AspLEI GCGC 1 cut(s) 699
AsuHPI GGTGA 3 cut(s) 198, 260, 628
AvaI CYCGRG 1 cut(s) 453
BamHI GGATCC 1 cut(s) 484
BanII GRGCYC 1 cut(s) 332
Bbv12I GWGCWC 1 cut(s) 332
BbvCI CCTCAGC 1 cut(s) 623
BbvI GCAGC 1 cut(s) 49
BccI CCATC 3 cut(s) 118, 239, 607
BciT130I CCWGG 1 cut(s) 661
BcoDI GTCTC 5 cut(s) 91, 100, 238, 500, 586
BfmI CTRYAG 1 cut(s) 23
BfoI RGCGCY 1 cut(s) 700
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
Bme1390I CCNGG 1 cut(s) 661
BmeT110I CYCGRG 1 cut(s) 453
BmiI GGNNCC 2 cut(s) 228, 486
BmrFI CCNGG 1 cut(s) 661
BmsI GCATC 2 cut(s) 248, 373
BplI GAGNNNNNCTC 2 cut(s) 97, 129
BpmI CTGGAG 1 cut(s) 124
Bpu10I CCTNAGC 1 cut(s) 623
BsaI GGTCTC 2 cut(s) 100, 586
BsaJI CCNNGG 1 cut(s) 562
BsaXI ACNNNNNCTCC 2 cut(s) 211, 241
Bsc4I CCNNNNNNNGG 3 cut(s) 129, 174, 613
Bse1I ACTGG 1 cut(s) 168
Bse3DI GCAATG 1 cut(s) 123
BseBI CCWGG 1 cut(s) 661
BseDI CCNNGG 1 cut(s) 562
BseLI CCNNNNNNNGG 3 cut(s) 129, 174, 613
BseMI GCAATG 1 cut(s) 123
BseMII CTCAG 1 cut(s) 614
BseNI ACTGG 1 cut(s) 168
BseRI GAGGAG 2 cut(s) 105, 659
BseXI GCAGC 1 cut(s) 49
BseYI CCCAGC 1 cut(s) 506
BshFI GGCC 1 cut(s) 133
BsiHKAI GWGCWC 1 cut(s) 332
BsiHKCI CYCGRG 1 cut(s) 453
BsiSI CCGG 1 cut(s) 703
BslFI GGGAC 1 cut(s) 13
BslI CCNNNNNNNGG 3 cut(s) 129, 174, 613
BsmAI GTCTC 5 cut(s) 91, 100, 238, 500, 586
BsmBI CGTCTC 1 cut(s) 500
BsmFI GGGAC 1 cut(s) 13
BsnI GGCC 1 cut(s) 133
Bso31I GGTCTC 2 cut(s) 100, 586
BsoBI CYCGRG 1 cut(s) 453
Bsp1286I GDGCHC 1 cut(s) 332
Bsp143I GATC 1 cut(s) 484
Bsp19I CCATGG 1 cut(s) 562
BspACI CCGC 2 cut(s) 278, 450
BspANI GGCC 1 cut(s) 133
BspCNI CTCAG 1 cut(s) 615
BspLI GGNNCC 2 cut(s) 228, 486
BspMAI CTGCAG 1 cut(s) 27
BspPI GGATC 2 cut(s) 479, 492
BspQI GCTCTTC 1 cut(s) 447
BspTNI GGTCTC 2 cut(s) 100, 586
BsrBI CCGCTC 1 cut(s) 280
BsrDI GCAATG 1 cut(s) 123
BsrI ACTGG 1 cut(s) 168
BssECI CCNNGG 1 cut(s) 562
BssMI GATC 1 cut(s) 484
BssT1I CCWWGG 1 cut(s) 562
Bst2UI CCWGG 1 cut(s) 661
Bst4CI ACNGT 2 cut(s) 223, 430
Bst6I CTCTTC 3 cut(s) 216, 447, 636
BstC8I GCNNGC 3 cut(s) 186, 417, 740
BstDEI CTNAG 3 cut(s) 623, 693, 711
BstDSI CCRYGG 1 cut(s) 562
BstH2I RGCGCY 1 cut(s) 700
BstHHI GCGC 1 cut(s) 699
BstKTI GATC 1 cut(s) 487
BstMAI GTCTC 5 cut(s) 91, 100, 238, 500, 586
BstMBI GATC 1 cut(s) 484
BstMWI GCNNNNNNNGC 1 cut(s) 703
BstNI CCWGG 1 cut(s) 661
BstSCI CCNGG 1 cut(s) 659
BstSFI CTRYAG 1 cut(s) 23
BstV1I GCAGC 1 cut(s) 49
BstX2I RGATCY 1 cut(s) 484
BstYI RGATCY 1 cut(s) 484
BsuRI GGCC 1 cut(s) 133
BtgI CCRYGG 1 cut(s) 562
BtsI GCAGTG 1 cut(s) 142
BtsIMutI CAGTG 1 cut(s) 142
Cac8I GCNNGC 3 cut(s) 186, 417, 740
CfoI GCGC 1 cut(s) 699
CseI GACGC 1 cut(s) 628
CviAII CATG 2 cut(s) 476, 563
CviJI RGCY 9 cut(s) 133, 227, 330, 419, 440, 659, 671, 706, 742
CviKI_1 RGCY 9 cut(s) 133, 227, 330, 419, 440, 659, 671, 706, 742
DdeI CTNAG 3 cut(s) 623, 693, 711
DpnI GATC 1 cut(s) 486
DpnII GATC 1 cut(s) 484
Eam1104I CTCTTC 3 cut(s) 216, 447, 636
EarI CTCTTC 3 cut(s) 216, 447, 636
EciI GGCGGA 1 cut(s) 439
Ecl136II GAGCTC 1 cut(s) 330
Eco130I CCWWGG 1 cut(s) 562
Eco147I AGGCCT 1 cut(s) 133
Eco24I GRGCYC 1 cut(s) 332
Eco31I GGTCTC 2 cut(s) 100, 586
Eco53kI GAGCTC 1 cut(s) 330
Eco57I CTGAAG 1 cut(s) 660
Eco88I CYCGRG 1 cut(s) 453
EcoICRI GAGCTC 1 cut(s) 330
EcoRII CCWGG 1 cut(s) 659
EcoT14I CCWWGG 1 cut(s) 562
EcoT22I ATGCAT 1 cut(s) 388
EcoT38I GRGCYC 1 cut(s) 332
ErhI CCWWGG 1 cut(s) 562
Esp3I CGTCTC 1 cut(s) 500
FaeI CATG 2 cut(s) 479, 566
FaiI YATR 8 cut(s) 42, 320, 371, 469, 471, 477, 564, 791
FalI AAGNNNNNCTT 4 cut(s) 329, 361, 515, 547
FaqI GGGAC 1 cut(s) 13
FatI CATG 2 cut(s) 475, 562
Fnu4HI GCNGC 1 cut(s) 63
FriOI GRGCYC 1 cut(s) 332
Fsp4HI GCNGC 1 cut(s) 63
GlaI GCGC 1 cut(s) 698
GluI GCNGC 1 cut(s) 63
GsaI CCCAGC 1 cut(s) 510
GsuI CTGGAG 1 cut(s) 124
HaeII RGCGCY 1 cut(s) 700
HaeIII GGCC 1 cut(s) 133
HapII CCGG 1 cut(s) 703
HgaI GACGC 1 cut(s) 628
HhaI GCGC 1 cut(s) 699
Hin1II CATG 2 cut(s) 479, 566
Hin6I GCGC 1 cut(s) 697
HinP1I GCGC 1 cut(s) 697
HincII GTYRAC 1 cut(s) 343
HindII GTYRAC 1 cut(s) 343
HinfI GANTC 7 cut(s) 19, 99, 191, 203, 361, 528, 537
HpaII CCGG 1 cut(s) 703
HphI GGTGA 3 cut(s) 198, 260, 628
Hpy166II GTNNAC 2 cut(s) 50, 343
Hpy188I TCNGA 3 cut(s) 96, 244, 749
Hpy188III TCNNGA 4 cut(s) 103, 488, 638, 798
Hpy8I GTNNAC 2 cut(s) 50, 343
HpyAV CCTTC 2 cut(s) 300, 709
HpyCH4III ACNGT 2 cut(s) 223, 430
HpyCH4IV ACGT 1 cut(s) 493
HpyCH4V TGCA 8 cut(s) 25, 65, 128, 188, 239, 386, 394, 400
HpyF10VI GCNNNNNNNGC 1 cut(s) 703
HpyF3I CTNAG 3 cut(s) 623, 693, 711
HpySE526I ACGT 1 cut(s) 493
Hsp92II CATG 2 cut(s) 479, 566
HspAI GCGC 1 cut(s) 697
Kzo9I GATC 1 cut(s) 484
LguI GCTCTTC 1 cut(s) 447
LmnI GCTCC 1 cut(s) 232
Lsp1109I GCAGC 1 cut(s) 49
LweI GCATC 2 cut(s) 248, 373
MaeII ACGT 1 cut(s) 493
MaeIII GTNAC 2 cut(s) 403, 616
MalI GATC 1 cut(s) 486
MbiI CCGCTC 1 cut(s) 280
MboI GATC 1 cut(s) 484
MboII GAAGA 9 cut(s) 66, 69, 72, 75, 203, 272, 392, 434, 653
MfeI CAATTG 1 cut(s) 608
MflI RGATCY 1 cut(s) 484
MhlI GDGCHC 1 cut(s) 332
MluCI AATT 3 cut(s) 302, 608, 676
MlyI GAGTC 1 cut(s) 93
MmeI TCCRAC 2 cut(s) 462, 499
MnlI CCTC 9 cut(s) 9, 126, 144, 219, 618, 637, 640, 710, 744
Mph1103I ATGCAT 1 cut(s) 388
MseI TTAA 1 cut(s) 311
MslI CAYNNNNRTG 1 cut(s) 323
MspI CCGG 1 cut(s) 703
MspR9I CCNGG 1 cut(s) 661
MunI CAATTG 1 cut(s) 608
MvaI CCWGG 1 cut(s) 661
MwoI GCNNNNNNNGC 1 cut(s) 703
NcoI CCATGG 1 cut(s) 562
NdeII GATC 1 cut(s) 484
NlaIII CATG 2 cut(s) 479, 566
NlaIV GGNNCC 2 cut(s) 228, 486
NmuCI GTSAC 2 cut(s) 403, 616
NsiI ATGCAT 1 cut(s) 388
PceI AGGCCT 1 cut(s) 133
PciSI GCTCTTC 1 cut(s) 447
PcsI WCGNNNNNNNCGW 1 cut(s) 370
PfeI GAWTC 6 cut(s) 19, 191, 203, 361, 528, 537
PflMI CCANNNNNTGG 1 cut(s) 613
PkrI GCNGC 1 cut(s) 64
PleI GAGTC 1 cut(s) 93
PpsI GAGTC 1 cut(s) 93
Psp124BI GAGCTC 1 cut(s) 332
Psp6I CCWGG 1 cut(s) 659
PspFI CCCAGC 1 cut(s) 506
PspGI CCWGG 1 cut(s) 659
PspN4I GGNNCC 2 cut(s) 228, 486
PsrI GAACNNNNNNTAC 2 cut(s) 539, 571
PstI CTGCAG 1 cut(s) 27
PsuI RGATCY 1 cut(s) 484
RseI CAYNNNNRTG 1 cut(s) 323
SacI GAGCTC 1 cut(s) 332
SapI GCTCTTC 1 cut(s) 447
SaqAI TTAA 1 cut(s) 311
SatI GCNGC 1 cut(s) 63
Sau3AI GATC 1 cut(s) 484
SchI GAGTC 1 cut(s) 93
ScrFI CCNGG 1 cut(s) 661
SduI GDGCHC 1 cut(s) 332
SetI ASST 7 cut(s) 211, 292, 332, 342, 421, 496, 744
SfaNI GCATC 2 cut(s) 248, 373
SfcI CTRYAG 1 cut(s) 23
SmiMI CAYNNNNRTG 1 cut(s) 323
Sse9I AATT 3 cut(s) 302, 608, 676
SseBI AGGCCT 1 cut(s) 133
SsiI CCGC 2 cut(s) 278, 450
SstI GAGCTC 1 cut(s) 332
StuI AGGCCT 1 cut(s) 133
StyD4I CCNGG 1 cut(s) 659
StyI CCWWGG 1 cut(s) 562
TaaI ACNGT 2 cut(s) 223, 430
TaiI ACGT 1 cut(s) 496
TaqI TCGA 1 cut(s) 201
TasI AATT 3 cut(s) 302, 608, 676
TfiI GAWTC 6 cut(s) 19, 191, 203, 361, 528, 537
Tru1I TTAA 1 cut(s) 311
Tru9I TTAA 1 cut(s) 311
TscAI CASTG 1 cut(s) 149
TseFI GTSAC 2 cut(s) 403, 616
TseI GCWGC 1 cut(s) 62
Tsp45I GTSAC 2 cut(s) 403, 616
TspDTI ATGAA 1 cut(s) 273
TspRI CASTG 1 cut(s) 149
Van91I CCANNNNNTGG 1 cut(s) 613
Zsp2I ATGCAT 1 cut(s) 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.