FvH4_4g01800

Guanine nucleotide-binding protein subunit gamma

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0012824
Physical Location & Seq
Forward (+)
1579642 .. 1582556
2915 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g01800.t1

Sequence Viewer

Length: 327 bp
ATGCAATCGGACGGGTCTGATTCCGTGAGCCTGAGTCCGACAGCCCAGAGGGTGCAGCAGTCTCTGTCAGCCTCGGATACTAGAGGGAAGCATCGGATACAGGCCGAGTTGAAACGGTTTGAGCAAGAAGCAAGATTCTTAGAGGAAGAGCTGGAACAACTTGAAAAGATAGACAAGGCCTCAGCTGCATGCAAGGAAATACTGAGTAATGTAGAAACAAGGCCGGATCCATTACTCCCAATAACCCGTGGCCCCCTTAATCCATTTTGGGATAGATGGTTTGAAGGCCCCAAAGACTCGAAAGGTTGCAGATGCTGGATACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 map04011
Pfam Domains
Protein Families
G-gamma

Protein Analysis

109

Amino Acids

12.33

Weight (kDa)

5.46

Isoelectric Point (pI)

54.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G-gamma PF00631 35 - 108 8.5e-15 GGL domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012824)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22942
fragaria_vesca FvH4_4g01800
malus_domestica MD13G1202200.v1.1 MD16G1202400.v1.1
prunus_persica Prupe.1G024000_v2.0.a1 Prupe.1G024000_v2.0.a1
pyrus_communis pycom13g17560
rosa_chinensis RchiOBHm_Chr4g0388841
rosa_laevigata RLG00000010021
rosa_multiflora Rmu_sc0016023.1_g000005
rosa_roxburghii Rroxscaffold_5G00335120
rosa_rugosa Rorug03G0320300 Rorug03G0320400
rosa_samantha Rh4AG025000 Rh4BG018100 Rh4CG027900 Rh4DG018700
rosa_wichuraiana Rw4G001790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 221, 234
AgsI TTSAA 3 cut(s) 112, 164, 284
AluBI AGCT 2 cut(s) 151, 185
AluI AGCT 2 cut(s) 151, 185
Alw26I GTCTC 1 cut(s) 66
AlwI GGATC 2 cut(s) 221, 234
AlwNI CAGNNNCTG 2 cut(s) 64, 315
AoxI GGCC 5 cut(s) 102, 177, 221, 250, 286
ApeKI GCWGC 2 cut(s) 55, 185
AspS9I GGNCC 2 cut(s) 251, 287
BamHI GGATCC 1 cut(s) 226
BbvCI CCTCAGC 1 cut(s) 181
BbvI GCAGC 2 cut(s) 67, 172
BccI CCATC 1 cut(s) 270
BciVI GTATCC 3 cut(s) 70, 90, 312
BcoDI GTCTC 1 cut(s) 66
BfaI CTAG 1 cut(s) 81
BfuI GTATCC 3 cut(s) 70, 90, 312
BisI GCNGC 2 cut(s) 56, 186
BlsI GCNGC 2 cut(s) 57, 187
BmgT120I GGNCC 2 cut(s) 251, 287
BmiI GGNNCC 3 cut(s) 228, 253, 289
BmsI GCATC 2 cut(s) 100, 302
Bpu10I CCTNAGC 1 cut(s) 181
BsaJI CCNNGG 2 cut(s) 72, 247
BseDI CCNNGG 2 cut(s) 72, 247
BseMII CTCAG 3 cut(s) 23, 194, 195
BseXI GCAGC 2 cut(s) 67, 172
BsgI GTGCAG 1 cut(s) 74
BshFI GGCC 5 cut(s) 104, 179, 223, 252, 288
BsiSI CCGG 1 cut(s) 224
BsmAI GTCTC 1 cut(s) 66
BsnI GGCC 5 cut(s) 104, 179, 223, 252, 288
Bsp143I GATC 1 cut(s) 226
BspANI GGCC 5 cut(s) 104, 179, 223, 252, 288
BspCNI CTCAG 3 cut(s) 24, 194, 195
BspLI GGNNCC 3 cut(s) 228, 253, 289
BspPI GGATC 2 cut(s) 221, 234
BspQI GCTCTTC 1 cut(s) 141
BssECI CCNNGG 2 cut(s) 72, 247
BssMI GATC 1 cut(s) 226
Bst4CI ACNGT 1 cut(s) 117
Bst6I CTCTTC 1 cut(s) 141
BstC8I GCNNGC 1 cut(s) 190
BstDEI CTNAG 4 cut(s) 32, 139, 181, 203
BstDSI CCRYGG 1 cut(s) 247
BstKTI GATC 1 cut(s) 229
BstMAI GTCTC 1 cut(s) 66
BstMBI GATC 1 cut(s) 226
BstMWI GCNNNNNNNGC 1 cut(s) 185
BstNSI RCATGY 1 cut(s) 192
BstV1I GCAGC 2 cut(s) 67, 172
BstX2I RGATCY 1 cut(s) 226
BstYI RGATCY 1 cut(s) 226
BsuI GTATCC 3 cut(s) 70, 90, 312
BsuRI GGCC 5 cut(s) 104, 179, 223, 252, 288
BtgI CCRYGG 1 cut(s) 247
Cac8I GCNNGC 1 cut(s) 190
CaiI CAGNNNCTG 2 cut(s) 64, 315
Cfr13I GGNCC 2 cut(s) 251, 287
CviAII CATG 1 cut(s) 189
DdeI CTNAG 4 cut(s) 32, 139, 181, 203
DpnI GATC 1 cut(s) 228
DpnII GATC 1 cut(s) 226
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
Eco147I AGGCCT 1 cut(s) 179
EcoO109I RGGNCCY 1 cut(s) 287
FaeI CATG 1 cut(s) 192
FaiI YATR 1 cut(s) 190
FatI CATG 1 cut(s) 188
Fnu4HI GCNGC 2 cut(s) 56, 186
Fsp4HI GCNGC 2 cut(s) 56, 186
FspBI CTAG 1 cut(s) 81
GluI GCNGC 2 cut(s) 56, 186
HaeIII GGCC 5 cut(s) 104, 179, 223, 252, 288
HapII CCGG 1 cut(s) 224
Hin1II CATG 1 cut(s) 192
HinfI GANTC 4 cut(s) 20, 34, 135, 296
HpaII CCGG 1 cut(s) 224
Hpy188I TCNGA 5 cut(s) 10, 19, 39, 76, 96
HpyAV CCTTC 1 cut(s) 278
HpyCH4III ACNGT 1 cut(s) 117
HpyCH4V TGCA 5 cut(s) 4, 55, 188, 192, 309
HpyF10VI GCNNNNNNNGC 1 cut(s) 185
HpyF3I CTNAG 4 cut(s) 32, 139, 181, 203
Hsp92II CATG 1 cut(s) 192
Kzo9I GATC 1 cut(s) 226
LguI GCTCTTC 1 cut(s) 141
LpnPI CCDG 6 cut(s) 44, 59, 86, 137, 237, 301
Lsp1109I GCAGC 2 cut(s) 67, 172
LweI GCATC 2 cut(s) 100, 302
MaeI CTAG 1 cut(s) 81
MalI GATC 1 cut(s) 228
MboI GATC 1 cut(s) 226
MboII GAAGA 1 cut(s) 158
MflI RGATCY 1 cut(s) 226
MlyI GAGTC 2 cut(s) 43, 290
MmeI TCCRAC 1 cut(s) 62
MnlI CCTC 5 cut(s) 42, 77, 82, 136, 190
MseI TTAA 1 cut(s) 258
MspA1I CMGCKG 1 cut(s) 185
MspI CCGG 1 cut(s) 224
MwoI GCNNNNNNNGC 1 cut(s) 185
NdeII GATC 1 cut(s) 226
NlaIII CATG 1 cut(s) 192
NlaIV GGNNCC 3 cut(s) 228, 253, 289
NmeAIII GCCGAG 1 cut(s) 130
NspI RCATGY 1 cut(s) 192
PaeI GCATGC 1 cut(s) 192
PceI AGGCCT 1 cut(s) 179
PciSI GCTCTTC 1 cut(s) 141
PfeI GAWTC 2 cut(s) 20, 135
PkrI GCNGC 2 cut(s) 57, 187
PleI GAGTC 2 cut(s) 42, 290
PpsI GAGTC 2 cut(s) 42, 290
PspN4I GGNNCC 3 cut(s) 228, 253, 289
PspPI GGNCC 2 cut(s) 251, 287
PstNI CAGNNNCTG 2 cut(s) 64, 315
PsuI RGATCY 1 cut(s) 226
PvuII CAGCTG 1 cut(s) 185
SapI GCTCTTC 1 cut(s) 141
SaqAI TTAA 1 cut(s) 258
SatI GCNGC 2 cut(s) 56, 186
Sau3AI GATC 1 cut(s) 226
Sau96I GGNCC 2 cut(s) 251, 287
SchI GAGTC 2 cut(s) 43, 290
SetI ASST 3 cut(s) 153, 187, 307
SfaNI GCATC 2 cut(s) 100, 302
SphI GCATGC 1 cut(s) 192
SseBI AGGCCT 1 cut(s) 179
SspMI CTAG 1 cut(s) 81
StuI AGGCCT 1 cut(s) 179
TaaI ACNGT 1 cut(s) 117
TaqI TCGA 1 cut(s) 299
TfiI GAWTC 2 cut(s) 20, 135
Tru1I TTAA 1 cut(s) 258
Tru9I TTAA 1 cut(s) 258
TseI GCWGC 2 cut(s) 55, 185
TspGWI ACGGA 1 cut(s) 13
XceI RCATGY 1 cut(s) 192
XspI CTAG 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.