Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0012824

Physical Location & Seq

Genomic Coordinates Forward (+)

34594247 .. 34594603

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0320300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGCATGCAGCTTCACCAAAGCAGTGTGAGCTGCTAGCCATTAGGGCGGGTTTGGATCTGCTATCCTCCTTGGGTATACAAAATGTGAGTGTTGAAACTAATGGAGGTCTAGTGGATGACATTCAGGAAGTGTGGAGTAGGCTGCATGGTGTGACCATATGTCACACTTCGAGAACTTGCAATGCGGTGGCTCACCGCCTAGCAGCTTTAGGGTTTGAGGCTACTATAGGAGCAGTCTGGTTTGATCATGCTCCTCCGTGCATTAGTGATGTACTACAGCACGACTGTGCTCAACTCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04011 map04011

Pfam Domains

Protein Families

G-gamma

Protein Analysis

100

Amino Acids

10.73

Weight (kDa)

5.5

Isoelectric Point (pI)

31.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22942
fragaria_vesca	FvH4_4g01800
malus_domestica	MD13G1202200.v1.1 MD16G1202400.v1.1
prunus_persica	Prupe.1G024000_v2.0.a1 Prupe.1G024000_v2.0.a1
pyrus_communis	pycom13g17560
rosa_chinensis	RchiOBHm_Chr4g0388841
rosa_laevigata	RLG00000010021
rosa_multiflora	Rmu_sc0016023.1_g000005
rosa_roxburghii	Rroxscaffold_5G00335120
rosa_rugosa	Rorug03G0320300 Rorug03G0320400
rosa_samantha	Rh4AG025000 Rh4BG018100 Rh4CG027900 Rh4DG018700
rosa_wichuraiana	Rw4G001790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	76
AciI	CCGC	3 cut(s)	47, 185, 196
AclWI	GGATC	1 cut(s)	63
AfaI	GTAC	1 cut(s)	273
AgsI	TTSAA	1 cut(s)	95
AhdI	GACNNNNNGTC	1 cut(s)	159
AleI	CACNNNNGTG	1 cut(s)	285
AluBI	AGCT	3 cut(s)	11, 31, 206
AluI	AGCT	3 cut(s)	11, 31, 206
Alw21I	GWGCWC	1 cut(s)	292
AlwI	GGATC	1 cut(s)	63
ApeKI	GCWGC	4 cut(s)	8, 31, 142, 203
AsuHPI	GGTGA	2 cut(s)	6, 185
AsuNHI	GCTAGC	1 cut(s)	34
Bbv12I	GWGCWC	1 cut(s)	292
BbvI	GCAGC	4 cut(s)	18, 20, 129, 215
BclI	TGATCA	1 cut(s)	244
BfaI	CTAG	3 cut(s)	35, 110, 200
BfmI	CTRYAG	2 cut(s)	225, 275
BglI	GCCNNNNNGGC	1 cut(s)	44
BisI	GCNGC	4 cut(s)	9, 32, 143, 204
BlsI	GCNGC	4 cut(s)	10, 33, 144, 205
BmeRI	GACNNNNNGTC	1 cut(s)	159
BmtI	GCTAGC	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	69
BsaXI	ACNNNNNCTCC	2 cut(s)	96, 126
Bse3DI	GCAATG	1 cut(s)	187
BseDI	CCNNGG	1 cut(s)	69
BseGI	GGATG	1 cut(s)	121
BseMI	GCAATG	1 cut(s)	187
BseRI	GAGGAG	1 cut(s)	243
BseXI	GCAGC	4 cut(s)	18, 20, 129, 215
BsiHKAI	GWGCWC	1 cut(s)	292
Bsp1286I	GDGCHC	1 cut(s)	292
Bsp143I	GATC	2 cut(s)	55, 244
BspACI	CCGC	3 cut(s)	47, 185, 196
BspOI	GCTAGC	1 cut(s)	38
BspPI	GGATC	1 cut(s)	63
BsrDI	GCAATG	1 cut(s)	187
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	2 cut(s)	55, 244
BssNAI	GTATAC	1 cut(s)	77
BssT1I	CCWWGG	1 cut(s)	69
Bst1107I	GTATAC	1 cut(s)	77
Bst4CI	ACNGT	1 cut(s)	287
BstC8I	GCNNGC	2 cut(s)	6, 36
BstF5I	GGATG	1 cut(s)	121
BstKTI	GATC	2 cut(s)	58, 247
BstMBI	GATC	2 cut(s)	55, 244
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 44
BstNSI	RCATGY	1 cut(s)	8
BstSFI	CTRYAG	2 cut(s)	225, 275
BstV1I	GCAGC	4 cut(s)	18, 20, 129, 215
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
BstZ17I	GTATAC	1 cut(s)	77
BtsCI	GGATG	1 cut(s)	121
BtsI	GCAGTG	1 cut(s)	29
BtsIMutI	CAGTG	1 cut(s)	29
Cac8I	GCNNGC	2 cut(s)	6, 36
Csp6I	GTAC	1 cut(s)	272
CviAII	CATG	3 cut(s)	5, 146, 248
CviJI	RGCY	7 cut(s)	11, 31, 38, 142, 191, 206, 221
CviKI_1	RGCY	7 cut(s)	11, 31, 38, 142, 191, 206, 221
CviQI	GTAC	1 cut(s)	272
DpnI	GATC	2 cut(s)	57, 246
DpnII	GATC	2 cut(s)	55, 244
DriI	GACNNNNNGTC	1 cut(s)	159
Eam1105I	GACNNNNNGTC	1 cut(s)	159
Eco130I	CCWWGG	1 cut(s)	69
EcoT14I	CCWWGG	1 cut(s)	69
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	3 cut(s)	8, 149, 251
FaiI	YATR	7 cut(s)	6, 77, 147, 158, 160, 227, 249
FatI	CATG	3 cut(s)	4, 145, 247
FauI	CCCGC	1 cut(s)	40
FauNDI	CATATG	1 cut(s)	158
FbaI	TGATCA	1 cut(s)	244
FblI	GTMKAC	1 cut(s)	76
Fnu4HI	GCNGC	4 cut(s)	9, 32, 143, 204
FokI	GGATG	1 cut(s)	128
Fsp4HI	GCNGC	4 cut(s)	9, 32, 143, 204
FspBI	CTAG	3 cut(s)	35, 110, 200
GluI	GCNGC	4 cut(s)	9, 32, 143, 204
Hin1II	CATG	3 cut(s)	8, 149, 251
HphI	GGTGA	2 cut(s)	6, 185
Hpy166II	GTNNAC	1 cut(s)	77
Hpy188III	TCNNGA	2 cut(s)	125, 171
Hpy8I	GTNNAC	1 cut(s)	77
HpyCH4III	ACNGT	1 cut(s)	287
HpyCH4V	TGCA	5 cut(s)	4, 8, 145, 180, 261
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 44
Hsp92II	CATG	3 cut(s)	8, 149, 251
Ksp22I	TGATCA	1 cut(s)	244
Kzo9I	GATC	2 cut(s)	55, 244
LmnI	GCTCC	2 cut(s)	230, 256
LpnPI	CCDG	2 cut(s)	110, 223
Lsp1109I	GCAGC	4 cut(s)	18, 20, 129, 215
MaeI	CTAG	3 cut(s)	35, 110, 200
MaeIII	GTNAC	2 cut(s)	151, 161
MalI	GATC	2 cut(s)	57, 246
MboI	GATC	2 cut(s)	55, 244
MflI	RGATCY	1 cut(s)	55
MhlI	GDGCHC	1 cut(s)	292
MnlI	CCTC	4 cut(s)	76, 98, 211, 264
Mph1103I	ATGCAT	1 cut(s)	6
MslI	CAYNNNNRTG	1 cut(s)	285
MwoI	GCNNNNNNNGC	2 cut(s)	28, 44
NdeI	CATATG	1 cut(s)	158
NdeII	GATC	2 cut(s)	55, 244
NheI	GCTAGC	1 cut(s)	34
NlaIII	CATG	3 cut(s)	8, 149, 251
NmuCI	GTSAC	2 cut(s)	151, 161
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
OliI	CACNNNNGTG	1 cut(s)	285
PaeI	GCATGC	1 cut(s)	8
PkrI	GCNGC	4 cut(s)	10, 33, 144, 205
PsuI	RGATCY	1 cut(s)	55
RsaI	GTAC	1 cut(s)	273
RsaNI	GTAC	1 cut(s)	272
RseI	CAYNNNNRTG	1 cut(s)	285
SatI	GCNGC	4 cut(s)	9, 32, 143, 204
Sau3AI	GATC	2 cut(s)	55, 244
SduI	GDGCHC	1 cut(s)	292
SetI	ASST	4 cut(s)	13, 33, 109, 208
SfcI	CTRYAG	2 cut(s)	225, 275
SmiMI	CAYNNNNRTG	1 cut(s)	285
SphI	GCATGC	1 cut(s)	8
SsiI	CCGC	3 cut(s)	47, 185, 196
SspMI	CTAG	3 cut(s)	35, 110, 200
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	1 cut(s)	287
TaqI	TCGA	1 cut(s)	170
TatI	WGTACW	1 cut(s)	271
TscAI	CASTG	1 cut(s)	29
TseFI	GTSAC	2 cut(s)	151, 161
TseI	GCWGC	4 cut(s)	8, 31, 142, 203
Tsp45I	GTSAC	2 cut(s)	151, 161
TspGWI	ACGGA	1 cut(s)	246
TspRI	CASTG	1 cut(s)	29
XceI	RCATGY	1 cut(s)	8
XmiI	GTMKAC	1 cut(s)	76
XspI	CTAG	3 cut(s)	35, 110, 200
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.