MD13G1202200.v1.1

Guanine nucleotide-binding protein subunit gamma

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0012824
Physical Location & Seq
Forward (+)
18133923 .. 18137684
3762 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1202200.v1.1.491

Sequence Viewer

Length: 318 bp
ATGCAATCGGATGGGTCGGAAACATTGAGCCCGACAACCCAACGGCTGCAGTCTTTGTCAGCCGCCGATACCAGAGGGAAGCACAGGATACATGCCGAGTTGAAGCGGCTCGAGCAAGAAACTAGATTCTTAGAGGAAGAACTGGAGCAACTTGAAAAGATGGAAAACGCATCATCTGCGTGCAAGGAAATACTGAAGGGTGCAGAAACAAAGCCGGATCCATTACTCCCAATAACACACGGCCCTCTTAATCCATTCTGGGATCGATGGTTCGAAGGCCCCCAAGACTCGAAAGGTTGCAGGTGCTGGATATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 map04011
Pfam Domains
Protein Families
G-gamma

Protein Analysis

106

Amino Acids

12.02

Weight (kDa)

5.38

Isoelectric Point (pI)

62.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G-gamma PF00631 33 - 105 1e-13 GGL domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012824)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22942
fragaria_vesca FvH4_4g01800
malus_domestica MD13G1202200.v1.1 MD16G1202400.v1.1
prunus_persica Prupe.1G024000_v2.0.a1 Prupe.1G024000_v2.0.a1
pyrus_communis pycom13g17560
rosa_chinensis RchiOBHm_Chr4g0388841
rosa_laevigata RLG00000010021
rosa_multiflora Rmu_sc0016023.1_g000005
rosa_roxburghii Rroxscaffold_5G00335120
rosa_rugosa Rorug03G0320300 Rorug03G0320400
rosa_samantha Rh4AG025000 Rh4BG018100 Rh4CG027900 Rh4DG018700
rosa_wichuraiana Rw4G001790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 291
Acc36I ACCTGC 1 cut(s) 291
AciI CCGC 2 cut(s) 63, 106
AclWI GGATC 3 cut(s) 212, 225, 270
AcuI CTGAAG 1 cut(s) 215
AgsI TTSAA 2 cut(s) 103, 155
AloI GAACNNNNNNTCC 2 cut(s) 254, 286
AlwI GGATC 3 cut(s) 212, 225, 270
AlwNI CAGNNNCTG 1 cut(s) 306
Ama87I CYCGRG 1 cut(s) 110
AoxI GGCC 2 cut(s) 241, 277
ApeKI GCWGC 1 cut(s) 46
AspS9I GGNCC 2 cut(s) 242, 278
AsuII TTCGAA 1 cut(s) 273
AvaI CYCGRG 1 cut(s) 110
BamHI GGATCC 1 cut(s) 217
BanII GRGCYC 1 cut(s) 32
BbvI GCAGC 1 cut(s) 33
BccI CCATC 3 cut(s) 5, 154, 261
BceAI ACGGC 2 cut(s) 59, 256
BciVI GTATCC 1 cut(s) 81
BfaI CTAG 1 cut(s) 123
BfmI CTRYAG 1 cut(s) 47
BfuAI ACCTGC 1 cut(s) 291
BfuI GTATCC 1 cut(s) 81
BisI GCNGC 3 cut(s) 47, 63, 107
BlsI GCNGC 3 cut(s) 48, 64, 108
BmeT110I CYCGRG 1 cut(s) 110
BmgT120I GGNCC 2 cut(s) 242, 278
BmiI GGNNCC 2 cut(s) 219, 280
BmsI GCATC 1 cut(s) 179
BpmI CTGGAG 1 cut(s) 164
Bpu14I TTCGAA 1 cut(s) 273
Bsa29I ATCGAT 1 cut(s) 265
Bse1I ACTGG 1 cut(s) 147
BseCI ATCGAT 1 cut(s) 265
BseGI GGATG 1 cut(s) 16
BseNI ACTGG 1 cut(s) 147
BseXI GCAGC 1 cut(s) 33
BsgI GTGCAG 1 cut(s) 222
BshFI GGCC 2 cut(s) 243, 279
BshVI ATCGAT 1 cut(s) 265
BsiHKCI CYCGRG 1 cut(s) 110
BsiSI CCGG 1 cut(s) 215
BsnI GGCC 2 cut(s) 243, 279
BsoBI CYCGRG 1 cut(s) 110
Bsp119I TTCGAA 1 cut(s) 273
Bsp1286I GDGCHC 1 cut(s) 32
Bsp143I GATC 2 cut(s) 217, 262
BspACI CCGC 2 cut(s) 63, 106
BspANI GGCC 2 cut(s) 243, 279
BspDI ATCGAT 1 cut(s) 265
BspLI GGNNCC 2 cut(s) 219, 280
BspMAI CTGCAG 1 cut(s) 51
BspMI ACCTGC 1 cut(s) 291
BspPI GGATC 3 cut(s) 212, 225, 270
BspT104I TTCGAA 1 cut(s) 273
BsrI ACTGG 1 cut(s) 147
BssMI GATC 2 cut(s) 217, 262
BstAPI GCANNNNNTGC 1 cut(s) 176
BstBI TTCGAA 1 cut(s) 273
BstC8I GCNNGC 1 cut(s) 181
BstDEI CTNAG 1 cut(s) 130
BstF5I GGATG 1 cut(s) 16
BstKTI GATC 2 cut(s) 220, 265
BstMBI GATC 2 cut(s) 217, 262
BstMWI GCNNNNNNNGC 2 cut(s) 112, 176
BstNSI RCATGY 1 cut(s) 95
BstSFI CTRYAG 1 cut(s) 47
BstV1I GCAGC 1 cut(s) 33
BstX2I RGATCY 1 cut(s) 217
BstYI RGATCY 1 cut(s) 217
Bsu15I ATCGAT 1 cut(s) 265
BsuI GTATCC 1 cut(s) 81
BsuRI GGCC 2 cut(s) 243, 279
BsuTUI ATCGAT 1 cut(s) 265
BtsCI GGATG 1 cut(s) 16
BveI ACCTGC 1 cut(s) 291
Cac8I GCNNGC 1 cut(s) 181
CaiI CAGNNNCTG 1 cut(s) 306
Cfr13I GGNCC 2 cut(s) 242, 278
ClaI ATCGAT 1 cut(s) 265
CviAII CATG 1 cut(s) 92
CviJI RGCY 7 cut(s) 30, 46, 62, 109, 214, 243, 279
CviKI_1 RGCY 7 cut(s) 30, 46, 62, 109, 214, 243, 279
DdeI CTNAG 1 cut(s) 130
DpnI GATC 2 cut(s) 219, 264
DpnII GATC 2 cut(s) 217, 262
Eco24I GRGCYC 1 cut(s) 32
Eco57I CTGAAG 1 cut(s) 215
Eco88I CYCGRG 1 cut(s) 110
EcoO109I RGGNCCY 1 cut(s) 278
EcoT38I GRGCYC 1 cut(s) 32
FaeI CATG 1 cut(s) 95
FaiI YATR 1 cut(s) 93
FatI CATG 1 cut(s) 91
Fnu4HI GCNGC 3 cut(s) 47, 63, 107
FokI GGATG 1 cut(s) 23
FriOI GRGCYC 1 cut(s) 32
Fsp4HI GCNGC 3 cut(s) 47, 63, 107
FspBI CTAG 1 cut(s) 123
GluI GCNGC 3 cut(s) 47, 63, 107
GsuI CTGGAG 1 cut(s) 164
HaeIII GGCC 2 cut(s) 243, 279
HapII CCGG 1 cut(s) 215
Hin1II CATG 1 cut(s) 95
HinfI GANTC 2 cut(s) 126, 287
HpaII CCGG 1 cut(s) 215
Hpy188I TCNGA 2 cut(s) 10, 19
HpyAV CCTTC 2 cut(s) 190, 269
HpyCH4V TGCA 5 cut(s) 4, 49, 183, 203, 300
HpyF10VI GCNNNNNNNGC 2 cut(s) 112, 176
HpyF3I CTNAG 1 cut(s) 130
Hsp92II CATG 1 cut(s) 95
Kzo9I GATC 2 cut(s) 217, 262
LmnI GCTCC 1 cut(s) 145
LpnPI CCDG 7 cut(s) 70, 85, 128, 228, 244, 286, 292
Lsp1109I GCAGC 1 cut(s) 33
LweI GCATC 1 cut(s) 179
MaeI CTAG 1 cut(s) 123
MalI GATC 2 cut(s) 219, 264
MboI GATC 2 cut(s) 217, 262
MboII GAAGA 1 cut(s) 149
MflI RGATCY 1 cut(s) 217
MhlI GDGCHC 1 cut(s) 32
MlyI GAGTC 1 cut(s) 281
MnlI CCTC 3 cut(s) 68, 127, 255
MseI TTAA 1 cut(s) 249
MslI CAYNNNNRTG 1 cut(s) 178
MspI CCGG 1 cut(s) 215
MwoI GCNNNNNNNGC 2 cut(s) 112, 176
NdeII GATC 2 cut(s) 217, 262
NlaIII CATG 1 cut(s) 95
NlaIV GGNNCC 2 cut(s) 219, 280
NmeAIII GCCGAG 1 cut(s) 121
NspI RCATGY 1 cut(s) 95
NspV TTCGAA 1 cut(s) 273
PaeR7I CTCGAG 1 cut(s) 110
PaqCI CACCTGC 1 cut(s) 291
PfeI GAWTC 1 cut(s) 126
PkrI GCNGC 3 cut(s) 48, 64, 108
PleI GAGTC 1 cut(s) 281
PpsI GAGTC 1 cut(s) 281
PspN4I GGNNCC 2 cut(s) 219, 280
PspPI GGNCC 2 cut(s) 242, 278
PspXI VCTCGAGB 1 cut(s) 110
PstI CTGCAG 1 cut(s) 51
PstNI CAGNNNCTG 1 cut(s) 306
PsuI RGATCY 1 cut(s) 217
RseI CAYNNNNRTG 1 cut(s) 178
SaqAI TTAA 1 cut(s) 249
SatI GCNGC 3 cut(s) 47, 63, 107
Sau3AI GATC 2 cut(s) 217, 262
Sau96I GGNCC 2 cut(s) 242, 278
SchI GAGTC 1 cut(s) 281
SduI GDGCHC 1 cut(s) 32
SetI ASST 2 cut(s) 298, 305
SfaNI GCATC 1 cut(s) 179
SfcI CTRYAG 1 cut(s) 47
Sfr274I CTCGAG 1 cut(s) 110
SfuI TTCGAA 1 cut(s) 273
SlaI CTCGAG 1 cut(s) 110
SmiMI CAYNNNNRTG 1 cut(s) 178
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
SsiI CCGC 2 cut(s) 63, 106
SspMI CTAG 1 cut(s) 123
TaqI TCGA 4 cut(s) 111, 265, 273, 290
TauI GCSGC 2 cut(s) 65, 109
TfiI GAWTC 1 cut(s) 126
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
TseI GCWGC 1 cut(s) 46
XceI RCATGY 1 cut(s) 95
XhoI CTCGAG 1 cut(s) 110
XspI CTAG 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.