Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0009242

Physical Location & Seq

Genomic Coordinates Forward (+)

3754790 .. 3760849

Gene Structure 6060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g04380.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGAACTTAAATTTTACTCAAAGTCCACAACAACAAAAAGCAGTTTGGGTGTCATTGTATATAACACACTATACATGCCATCACCCCTTTGTGATGAGAGAGTGGATATCTCTCAGTATGGCATGTTTAGAGAGGGCTTCCCCAGCTTTGAAGGAAATCCTGCTGAAGTTATACCACAGTGCCAACAAGTCCACAGAGATTGATCATCACTTGTATGAATTTGGGTCTGTGGAATACCATATCCAGTCATCAGCCTCAAATGAACATTATGTATACTTGTCAATATCAACTCCACTGCTTTCCCAAGAAGTCCTGTTGCCATATGGGATTTCACATAGTACCAAACAGATGGTAACAGCAATTTGTCCAGATGTTATTGAGATCATTGAACCTGCAAAAGAAGGATACCAGCTTACTTTAAGGCTTGATTTTTCTAGACTGCCAAACGGAAAAGATTCTCTAAAGATAATTGCTGAGATTTCTGCTGTGCAATCAATAATTTTAAGTTCTCGGCTGAAAGAAATCTTGACAAATGTCAACTCCTATGATTCATTTCAAGGGATGTATAAGCCAATCAAGCTCCTGTATCGCCCAAGTGAGCCTTTCTTCATTATTAGACAGCCACAGAAGAGCATAGCAGTATTCCCCATACATTTTAAAGACAAACCAGATGTCATAATCGCAACAACCTTCTTTCAGGAACTTATGGATGTTGGAAGCTCTGAAAAATGGGCCAAAGCACCTCCTTGTTGCTGGTCACCAATTCCACCTCCAGAGTTAAGAGGGGAACTTTTTGAAGATTTGAGTACAACTGGAGGATTTGTGTCTTTTGAGATTTCTCCACGGCATGTCAAAGGTAAAAAACTGGACAAGACAGTATGGAGCTTATTGAATTTCTATGCCTATGTAAAATTCCATGTGAAGAGTACTAGAAGTTATATCCAGAGAAGGATGAGAAAGCGTTTGGAGGGATTAGTTGAGCTCCTTCATACGCATAACATAAAAGTAGAAGATGAAGAAACGCGAAGCCGCAAGATTCAAGGATTCAAGTGTACGATAAGGATAGCCAATCTACCAAAATTTACTGTCCTTAAACGAAGATATAATGGATTCAGAAGGACCATCAAGAGAATCAGATCTCGAATTAGAATCCATGGATTCGGGCGATTTCGTCACCGATGGTTAAAACTACCAAAGTTCTCTTCTTCTATGGGATATACCAAATTAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003779 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005885 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0008360 GO:0009653 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0022603 GO:0022604 GO:0022607 GO:0030029 GO:0030030 GO:0030031 GO:0030036 GO:0030832 GO:0030833 GO:0030838 GO:0030865 GO:0030866 GO:0031334 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0034314 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044085 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0045010 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0097435 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

P34-Arc

Protein Analysis

411

Amino Acids

47.74

Weight (kDa)

9.72

Isoelectric Point (pI)

58.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
P34-Arc	PF04045	130 - 330	8e-30	Arp2/3 complex, 34 kD subunit p34-Arc

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0009242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33385 AT2G33385 AT2G33385 AT2G33385
fragaria_vesca	FvH4_4g04380 FvH4_4g04380
malus_domestica	MD16G1224900.v1.1
prunus_persica	Prupe.1G046200_v2.0.a1 Prupe.1G046200_v2.0.a1 Prupe.1G046200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0394951
rosa_laevigata	RLG00000009656
rosa_multiflora	Rmu_sc0005802.1_g000026
rosa_roxburghii	Rroxscaffold_5G00339920
rosa_rugosa	Rorug03G0360500.1 Rorug03G0360600.1 Rorug03G0360700.1
rosa_samantha	Rh4AG056000 Rh4BG054600 Rh4CG060500 Rh4DG051900
rosa_wichuraiana	Rw4G004460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	400
AccI	GTMKAC	1 cut(s)	273
AccII	CGCG	1 cut(s)	1024
AciI	CCGC	1 cut(s)	1030
AcsI	RAATTY	5 cut(s)	10, 218, 892, 911, 1079
AcuI	CTGAAG	1 cut(s)	185
AfaI	GTAC	4 cut(s)	340, 808, 928, 1054
AgsI	TTSAA	7 cut(s)	151, 389, 557, 797, 892, 1040, 1048
AjuI	GAANNNNNNNTTGG	2 cut(s)	1186, 1218
AluBI	AGCT	6 cut(s)	146, 412, 580, 720, 885, 982
AluI	AGCT	6 cut(s)	146, 412, 580, 720, 885, 982
Alw21I	GWGCWC	1 cut(s)	984
AoxI	GGCC	1 cut(s)	732
ApoI	RAATTY	5 cut(s)	10, 218, 892, 911, 1079
ArsI	GACNNNNNNTTYG	2 cut(s)	657, 689
Asp700I	GAANNNNTTC	1 cut(s)	454
AspS9I	GGNCC	2 cut(s)	732, 1119
AsuHPI	GGTGA	3 cut(s)	74, 750, 1166
AvaII	GGWCC	1 cut(s)	1119
BanII	GRGCYC	1 cut(s)	984
Bbv12I	GWGCWC	1 cut(s)	984
BccI	CCATC	4 cut(s)	87, 343, 1130, 1173
BceAI	ACGGC	1 cut(s)	860
BciVI	GTATCC	1 cut(s)	398
BclI	TGATCA	1 cut(s)	202
BfaI	CTAG	2 cut(s)	435, 930
BfuAI	ACCTGC	1 cut(s)	400
BfuI	GTATCC	1 cut(s)	398
BglII	AGATCT	1 cut(s)	1136
BisI	GCNGC	1 cut(s)	1030
BlsI	GCNGC	1 cut(s)	1031
BmcAI	AGTACT	1 cut(s)	928
Bme18I	GGWCC	1 cut(s)	1119
BmgT120I	GGNCC	2 cut(s)	732, 1119
BoxI	GACNNNNGTC	1 cut(s)	533
BpmI	CTGGAG	2 cut(s)	756, 834
BsaJI	CCNNGG	2 cut(s)	842, 1153
BsaXI	ACNNNNNCTCC	2 cut(s)	807, 837
Bse1I	ACTGG	3 cut(s)	244, 817, 870
BseDI	CCNNGG	2 cut(s)	842, 1153
BseGI	GGATG	3 cut(s)	567, 715, 957
BseMII	CTCAG	2 cut(s)	127, 465
BseNI	ACTGG	3 cut(s)	244, 817, 870
BseYI	CCCAGC	1 cut(s)	142
Bsh1236I	CGCG	1 cut(s)	1024
BshFI	GGCC	1 cut(s)	734
BsiHKAI	GWGCWC	1 cut(s)	984
BsnI	GGCC	1 cut(s)	734
Bsp1286I	GDGCHC	1 cut(s)	984
Bsp143I	GATC	3 cut(s)	202, 381, 1136
Bsp19I	CCATGG	1 cut(s)	1153
BspACI	CCGC	1 cut(s)	1030
BspANI	GGCC	1 cut(s)	734
BspCNI	CTCAG	2 cut(s)	126, 466
BspFNI	CGCG	1 cut(s)	1024
BspMI	ACCTGC	1 cut(s)	400
BspQI	GCTCTTC	1 cut(s)	623
BsrI	ACTGG	3 cut(s)	244, 817, 870
BssECI	CCNNGG	2 cut(s)	842, 1153
BssMI	GATC	3 cut(s)	202, 381, 1136
BssNAI	GTATAC	1 cut(s)	274
BssT1I	CCWWGG	1 cut(s)	1153
Bst1107I	GTATAC	1 cut(s)	274
Bst4CI	ACNGT	3 cut(s)	179, 877, 1087
Bst6I	CTCTTC	3 cut(s)	623, 917, 1207
BstDEI	CTNAG	2 cut(s)	113, 474
BstDSI	CCRYGG	2 cut(s)	842, 1153
BstEII	GGTNACC	1 cut(s)	756
BstF5I	GGATG	3 cut(s)	567, 715, 957
BstFNI	CGCG	1 cut(s)	1024
BstKTI	GATC	3 cut(s)	205, 384, 1139
BstMBI	GATC	3 cut(s)	202, 381, 1136
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 577
BstNSI	RCATGY	3 cut(s)	78, 126, 851
BstPAI	GACNNNNGTC	1 cut(s)	533
BstPI	GGTNACC	1 cut(s)	756
BstUI	CGCG	1 cut(s)	1024
BstX2I	RGATCY	1 cut(s)	1136
BstXI	CCANNNNNNTGG	1 cut(s)	349
BstYI	RGATCY	1 cut(s)	1136
BstZ17I	GTATAC	1 cut(s)	274
BsuI	GTATCC	1 cut(s)	398
BsuRI	GGCC	1 cut(s)	734
BtgI	CCRYGG	2 cut(s)	842, 1153
BtsCI	GGATG	3 cut(s)	567, 715, 957
BtsI	GCAGTG	1 cut(s)	293
BtsIMutI	CAGTG	2 cut(s)	184, 293
BveI	ACCTGC	1 cut(s)	400
Cfr13I	GGNCC	2 cut(s)	732, 1119
Csp6I	GTAC	4 cut(s)	339, 807, 927, 1053
CspCI	CAANNNNNGTGG	2 cut(s)	181, 216
CviAII	CATG	5 cut(s)	75, 123, 848, 917, 1154
CviQI	GTAC	4 cut(s)	339, 807, 927, 1053
DdeI	CTNAG	2 cut(s)	113, 474
DpnI	GATC	3 cut(s)	204, 383, 1138
DpnII	GATC	3 cut(s)	202, 381, 1136
DraI	TTTAAA	1 cut(s)	658
Eam1104I	CTCTTC	3 cut(s)	623, 917, 1207
EarI	CTCTTC	3 cut(s)	623, 917, 1207
Ecl136II	GAGCTC	1 cut(s)	982
Eco130I	CCWWGG	1 cut(s)	1153
Eco24I	GRGCYC	1 cut(s)	984
Eco32I	GATATC	1 cut(s)	108
Eco47I	GGWCC	1 cut(s)	1119
Eco53kI	GAGCTC	1 cut(s)	982
Eco57I	CTGAAG	1 cut(s)	185
Eco91I	GGTNACC	1 cut(s)	756
EcoICRI	GAGCTC	1 cut(s)	982
EcoO65I	GGTNACC	1 cut(s)	756
EcoRV	GATATC	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	1153
EcoT38I	GRGCYC	1 cut(s)	984
ErhI	CCWWGG	1 cut(s)	1153
FaeI	CATG	5 cut(s)	78, 126, 851, 920, 1157
FalI	AAGNNNNNCTT	2 cut(s)	586, 618
FatI	CATG	5 cut(s)	74, 122, 847, 916, 1153
FauNDI	CATATG	1 cut(s)	322
FbaI	TGATCA	1 cut(s)	202
FblI	GTMKAC	1 cut(s)	273
Fnu4HI	GCNGC	1 cut(s)	1030
FokI	GGATG	3 cut(s)	574, 722, 964
FriOI	GRGCYC	1 cut(s)	984
Fsp4HI	GCNGC	1 cut(s)	1030
FspBI	CTAG	2 cut(s)	435, 930
GluI	GCNGC	1 cut(s)	1030
GsaI	CCCAGC	1 cut(s)	146
GsuI	CTGGAG	2 cut(s)	756, 834
HaeIII	GGCC	1 cut(s)	734
Hin1II	CATG	5 cut(s)	78, 126, 851, 920, 1157
HincII	GTYRAC	1 cut(s)	538
HindII	GTYRAC	1 cut(s)	538
HinfI	GANTC	8 cut(s)	455, 548, 1036, 1044, 1110, 1131, 1149, 1158
HphI	GGTGA	3 cut(s)	74, 750, 1166
Hpy166II	GTNNAC	5 cut(s)	26, 192, 274, 538, 1053
Hpy188I	TCNGA	3 cut(s)	724, 1115, 1136
Hpy188III	TCNNGA	8 cut(s)	368, 435, 526, 698, 773, 943, 1126, 1140
Hpy8I	GTNNAC	5 cut(s)	26, 192, 274, 538, 1053
HpyAV	CCTTC	6 cut(s)	145, 395, 700, 942, 995, 1110
HpyCH4III	ACNGT	3 cut(s)	179, 877, 1087
HpyCH4V	TGCA	2 cut(s)	395, 490
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 577
HpyF3I	CTNAG	2 cut(s)	113, 474
Hsp92II	CATG	5 cut(s)	78, 126, 851, 920, 1157
Ksp22I	TGATCA	1 cut(s)	202
Kzo9I	GATC	3 cut(s)	202, 381, 1136
LguI	GCTCTTC	1 cut(s)	623
LmnI	GCTCC	3 cut(s)	585, 882, 987
MaeI	CTAG	2 cut(s)	435, 930
MaeIII	GTNAC	3 cut(s)	352, 756, 1172
MalI	GATC	3 cut(s)	204, 383, 1138
MboI	GATC	3 cut(s)	202, 381, 1136
MboII	GAAGA	9 cut(s)	598, 640, 809, 934, 1022, 1028, 1110, 1194, 1197
MflI	RGATCY	1 cut(s)	1136
MhlI	GDGCHC	1 cut(s)	984
MmeI	TCCRAC	1 cut(s)	694
MnlI	CCTC	7 cut(s)	126, 265, 753, 776, 780, 809, 961
MroXI	GAANNNNTTC	1 cut(s)	454
MseI	TTAA	7 cut(s)	8, 419, 503, 657, 779, 1092, 1184
MslI	CAYNNNNRTG	1 cut(s)	213
MvnI	CGCG	1 cut(s)	1024
MwoI	GCNNNNNNNGC	2 cut(s)	143, 577
NcoI	CCATGG	1 cut(s)	1153
NdeI	CATATG	1 cut(s)	322
NdeII	GATC	3 cut(s)	202, 381, 1136
NlaIII	CATG	5 cut(s)	78, 126, 851, 920, 1157
NmeAIII	GCCGAG	1 cut(s)	490
NmuCI	GTSAC	2 cut(s)	756, 1172
NspI	RCATGY	3 cut(s)	78, 126, 851
PciSI	GCTCTTC	1 cut(s)	623
PdmI	GAANNNNTTC	1 cut(s)	454
PfeI	GAWTC	8 cut(s)	455, 548, 1036, 1044, 1110, 1131, 1149, 1158
PkrI	GCNGC	1 cut(s)	1031
PshAI	GACNNNNGTC	1 cut(s)	533
Psp124BI	GAGCTC	1 cut(s)	984
PspEI	GGTNACC	1 cut(s)	756
PspFI	CCCAGC	1 cut(s)	142
PspPI	GGNCC	2 cut(s)	732, 1119
PsuI	RGATCY	1 cut(s)	1136
RsaI	GTAC	4 cut(s)	340, 808, 928, 1054
RsaNI	GTAC	4 cut(s)	339, 807, 927, 1053
RseI	CAYNNNNRTG	1 cut(s)	213
SacI	GAGCTC	1 cut(s)	984
SapI	GCTCTTC	1 cut(s)	623
SaqAI	TTAA	7 cut(s)	8, 419, 503, 657, 779, 1092, 1184
SatI	GCNGC	1 cut(s)	1030
Sau3AI	GATC	3 cut(s)	202, 381, 1136
Sau96I	GGNCC	2 cut(s)	732, 1119
ScaI	AGTACT	1 cut(s)	928
SduI	GDGCHC	1 cut(s)	984
SinI	GGWCC	1 cut(s)	1119
SmiMI	CAYNNNNRTG	1 cut(s)	213
SsiI	CCGC	1 cut(s)	1030
SspMI	CTAG	2 cut(s)	435, 930
SstI	GAGCTC	1 cut(s)	984
StyI	CCWWGG	1 cut(s)	1153
TaaI	ACNGT	3 cut(s)	179, 877, 1087
TaqI	TCGA	1 cut(s)	1141
TatI	WGTACW	2 cut(s)	806, 926
TauI	GCSGC	1 cut(s)	1032
TfiI	GAWTC	8 cut(s)	455, 548, 1036, 1044, 1110, 1131, 1149, 1158
Tru1I	TTAA	7 cut(s)	8, 419, 503, 657, 779, 1092, 1184
Tru9I	TTAA	7 cut(s)	8, 419, 503, 657, 779, 1092, 1184
TscAI	CASTG	2 cut(s)	184, 300
TseFI	GTSAC	2 cut(s)	756, 1172
Tsp45I	GTSAC	2 cut(s)	756, 1172
TspDTI	ATGAA	7 cut(s)	17, 231, 276, 540, 598, 977, 1029
TspGWI	ACGGA	1 cut(s)	462
TspRI	CASTG	2 cut(s)	184, 300
VpaK11BI	GGWCC	1 cut(s)	1119
XapI	RAATTY	5 cut(s)	10, 218, 892, 911, 1079
XbaI	TCTAGA	1 cut(s)	434
XceI	RCATGY	3 cut(s)	78, 126, 851
XmiI	GTMKAC	1 cut(s)	273
XmnI	GAANNNNTTC	1 cut(s)	454
XspI	CTAG	2 cut(s)	435, 930
ZrmI	AGTACT	1 cut(s)	928

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.