Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009242

Physical Location & Seq

Genomic Coordinates Forward (+)

3284088 .. 3289209

Gene Structure 5122 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G046200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGCATGCTTAGAGAGGGCATCCCCAGCTTTGAAGAGAATCCTGCTCAAATTGGACCGTGAAAACAAGTCCATAGAGATTGATCATCACTTGTATGAATTTGGGTCTGTGGAATACCATATCCAGTCTTCAACATCAGATACACATTATACCAACTTGTCAGTATCAACCCCGCTCCTTTCCCAAGGAGGCATACTACCAAACGGGATTTCGCATTATACTAAACAGATGGTAAAGGGAATTTGTCCGGATGTTGTGGAGATCATAGAACCTGCAAAAGAAGGATACCAGATTACTTTGAGACTTGATTTGTCTAAAATTCCAAATGGAAAAGAATCTATAAAGGTAATTGCAGACATTTCTGCTGTGCAAGCAGTAATCCTAAGTTCTCAGCTGAAAGAAATGTTGATGAATGTCAGCTCCCAAGATACATTTCAAGGAATGTATAAGACAATCAAGCTTGTATATCACCCAAGAGAGCCTTTCTTTATTGTTAGACAGCCACAGAAAATCTTAGCAGTATTCCCGATACGTTTTAAAGACAAAACAGACGTCATTATTGCAACAGCCTTCTTTCAGGAACTTGTGGATGTTGGAAGTTCTGAAAAATGGGCCAAAGCACCACCTTGTTGCTGGTCACCCATTCCACCTCCAGAGTTAAGAGGAGAACCTTTTGAAGATTTGAGTACCAACGGAGGATTTGTCTCTTTTGATATTTCTTCACGCCATGTCAGAGGTAAAAGACTAGACAAGACTGTATGGAGTTTGTTGAATTTCTATGCCTATGTTAAATATCATGTAAAGAGCACCAGAAGTTTTATTCAGAGAAGGATGAGAAAGCGTTTGCAGAGATTAGTTGAGGTCCTGCATAAGAGAAGCACGCAGGAAGAAGAAAAAGAAGAAGAAGAAGAGGGAAACCATAAGGTTCAAGGATGCATGTTCATGAGAAAAATGATCAATGTATCAAAACCTAAAGTCCTAAAACGAAGATATAATGACTTGAGCGGGAAGATCAAGAGAATCCGTTCGCGAATTAAAATCCTGGGATTTGGGCGTTTTCGTCGACGATGGTTGAAAATGCCAAAGTTTTCTTCTTCAATGAGATATACCAAATTAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003779 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005885 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0008360 GO:0009653 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0022603 GO:0022604 GO:0022607 GO:0030029 GO:0030030 GO:0030031 GO:0030036 GO:0030832 GO:0030833 GO:0030838 GO:0030865 GO:0030866 GO:0031334 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0034314 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044085 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0045010 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0097435 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

P34-Arc

Protein Analysis

374

Amino Acids

43.24

Weight (kDa)

9.81

Isoelectric Point (pI)

63.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33385 AT2G33385 AT2G33385 AT2G33385
fragaria_vesca	FvH4_4g04380 FvH4_4g04380
malus_domestica	MD16G1224900.v1.1
prunus_persica	Prupe.1G046200_v2.0.a1 Prupe.1G046200_v2.0.a1 Prupe.1G046200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0394951
rosa_laevigata	RLG00000009656
rosa_multiflora	Rmu_sc0005802.1_g000026
rosa_roxburghii	Rroxscaffold_5G00339920
rosa_rugosa	Rorug03G0360500.1 Rorug03G0360600.1 Rorug03G0360700.1
rosa_samantha	Rh4AG056000 Rh4BG054600 Rh4CG060500 Rh4DG051900
rosa_wichuraiana	Rw4G004460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	555
Acc36I	ACCTGC	1 cut(s)	280
AccBSI	CCGCTC	2 cut(s)	175, 1005
AccI	GTMKAC	1 cut(s)	1063
AccII	CGCG	1 cut(s)	1030
AccIII	TCCGGA	1 cut(s)	247
AciI	CCGC	2 cut(s)	173, 1005
AcsI	RAATTY	4 cut(s)	98, 240, 318, 772
AcyI	GRCGYC	1 cut(s)	552
AfaI	GTAC	1 cut(s)	688
AgsI	TTSAA	8 cut(s)	34, 132, 437, 677, 772, 929, 1075, 1098
AjnI	CCWGG	1 cut(s)	1041
AjuI	GAANNNNNNNTTGG	6 cut(s)	193, 225, 417, 449, 1075, 1107
AluBI	AGCT	4 cut(s)	29, 394, 420, 460
AluI	AGCT	4 cut(s)	29, 394, 420, 460
Alw21I	GWGCWC	1 cut(s)	809
Alw26I	GTCTC	2 cut(s)	295, 709
Aor13HI	TCCGGA	1 cut(s)	247
AoxI	GGCC	1 cut(s)	612
ApoI	RAATTY	4 cut(s)	98, 240, 318, 772
ArsI	GACNNNNNNTTYG	2 cut(s)	537, 569
Asp700I	GAANNNNTTC	1 cut(s)	1024
AspS9I	GGNCC	3 cut(s)	55, 612, 862
AsuHPI	GGTGA	2 cut(s)	461, 630
AvaII	GGWCC	2 cut(s)	55, 862
BbsI	GAAGAC	1 cut(s)	120
Bbv12I	GWGCWC	1 cut(s)	809
BccI	CCATC	2 cut(s)	223, 1062
BciT130I	CCWGG	1 cut(s)	1043
BciVI	GTATCC	1 cut(s)	278
BclI	TGATCA	2 cut(s)	82, 954
BcoDI	GTCTC	2 cut(s)	295, 709
BfaI	CTAG	1 cut(s)	746
BfuAI	ACCTGC	1 cut(s)	280
BfuI	GTATCC	1 cut(s)	278
Bme1390I	CCNGG	1 cut(s)	1043
Bme18I	GGWCC	2 cut(s)	55, 862
BmgT120I	GGNCC	3 cut(s)	55, 612, 862
BmrFI	CCNGG	1 cut(s)	1043
BmsI	GCATC	2 cut(s)	29, 923
BpiI	GAAGAC	1 cut(s)	120
BpmI	CTGGAG	1 cut(s)	636
BpuEI	CTTGAG	1 cut(s)	1021
BsaHI	GRCGYC	1 cut(s)	552
BsaJI	CCNNGG	2 cut(s)	184, 1042
BsaWI	WCCGGW	1 cut(s)	247
BsaXI	ACNNNNNCTCC	2 cut(s)	687, 717
Bse1I	ACTGG	1 cut(s)	124
BseAI	TCCGGA	1 cut(s)	247
BseBI	CCWGG	1 cut(s)	1043
BseDI	CCNNGG	2 cut(s)	184, 1042
BseGI	GGATG	5 cut(s)	20, 256, 595, 837, 938
BseMII	CTCAG	1 cut(s)	404
BseNI	ACTGG	1 cut(s)	124
BseRI	GAGGAG	1 cut(s)	678
BseYI	CCCAGC	1 cut(s)	25
Bsh1236I	CGCG	1 cut(s)	1030
BshFI	GGCC	1 cut(s)	614
BsiHKAI	GWGCWC	1 cut(s)	809
BsiSI	CCGG	1 cut(s)	248
BsmAI	GTCTC	2 cut(s)	295, 709
BsnI	GGCC	1 cut(s)	614
Bsp1286I	GDGCHC	1 cut(s)	809
Bsp13I	TCCGGA	1 cut(s)	247
Bsp143I	GATC	4 cut(s)	82, 261, 954, 1011
Bsp68I	TCGCGA	1 cut(s)	1030
BspACI	CCGC	2 cut(s)	173, 1005
BspANI	GGCC	1 cut(s)	614
BspCNI	CTCAG	1 cut(s)	403
BspEI	TCCGGA	1 cut(s)	247
BspFNI	CGCG	1 cut(s)	1030
BspHI	TCATGA	1 cut(s)	942
BspMI	ACCTGC	1 cut(s)	280
BsrBI	CCGCTC	2 cut(s)	175, 1005
BsrI	ACTGG	1 cut(s)	124
BssECI	CCNNGG	2 cut(s)	184, 1042
BssMI	GATC	4 cut(s)	82, 261, 954, 1011
BssNI	GRCGYC	1 cut(s)	552
BssT1I	CCWWGG	1 cut(s)	184
Bst2UI	CCWGG	1 cut(s)	1043
Bst4CI	ACNGT	2 cut(s)	59, 757
Bst6I	CTCTTC	2 cut(s)	29, 903
BstACI	GRCGYC	1 cut(s)	552
BstC8I	GCNNGC	3 cut(s)	7, 372, 881
BstDEI	CTNAG	4 cut(s)	10, 383, 390, 514
BstEII	GGTNACC	1 cut(s)	636
BstF5I	GGATG	5 cut(s)	20, 256, 595, 837, 938
BstFNI	CGCG	1 cut(s)	1030
BstKTI	GATC	4 cut(s)	85, 264, 957, 1014
BstMAI	GTCTC	2 cut(s)	295, 709
BstMBI	GATC	4 cut(s)	82, 261, 954, 1011
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 371
BstNI	CCWGG	1 cut(s)	1043
BstNSI	RCATGY	2 cut(s)	9, 940
BstPI	GGTNACC	1 cut(s)	636
BstSCI	CCNGG	1 cut(s)	1041
BstUI	CGCG	1 cut(s)	1030
BstV2I	GAAGAC	1 cut(s)	120
BsuI	GTATCC	1 cut(s)	278
BsuRI	GGCC	1 cut(s)	614
BtsCI	GGATG	5 cut(s)	20, 256, 595, 837, 938
BtuMI	TCGCGA	1 cut(s)	1030
BveI	ACCTGC	1 cut(s)	280
Cac8I	GCNNGC	3 cut(s)	7, 372, 881
CciI	TCATGA	1 cut(s)	942
Cfr13I	GGNCC	3 cut(s)	55, 612, 862
Csp6I	GTAC	1 cut(s)	687
CviAII	CATG	5 cut(s)	6, 728, 797, 937, 943
CviJI	RGCY	8 cut(s)	29, 394, 420, 460, 481, 502, 569, 614
CviKI_1	RGCY	8 cut(s)	29, 394, 420, 460, 481, 502, 569, 614
CviQI	GTAC	1 cut(s)	687
DdeI	CTNAG	4 cut(s)	10, 383, 390, 514
DpnI	GATC	4 cut(s)	84, 263, 956, 1013
DpnII	GATC	4 cut(s)	82, 261, 954, 1011
DraI	TTTAAA	1 cut(s)	538
Eam1104I	CTCTTC	2 cut(s)	29, 903
EarI	CTCTTC	2 cut(s)	29, 903
Eco130I	CCWWGG	1 cut(s)	184
Eco47I	GGWCC	2 cut(s)	55, 862
Eco91I	GGTNACC	1 cut(s)	636
EcoO109I	RGGNCCY	1 cut(s)	862
EcoO65I	GGTNACC	1 cut(s)	636
EcoRII	CCWGG	1 cut(s)	1041
EcoT14I	CCWWGG	1 cut(s)	184
EcoT22I	ATGCAT	1 cut(s)	938
ErhI	CCWWGG	1 cut(s)	184
FaeI	CATG	5 cut(s)	9, 731, 800, 940, 946
FalI	AAGNNNNNCTT	2 cut(s)	466, 498
FatI	CATG	5 cut(s)	5, 727, 796, 936, 942
FauI	CCCGC	2 cut(s)	180, 998
FbaI	TGATCA	2 cut(s)	82, 954
FblI	GTMKAC	1 cut(s)	1063
FokI	GGATG	5 cut(s)	7, 263, 602, 844, 945
FspBI	CTAG	1 cut(s)	746
GsaI	CCCAGC	1 cut(s)	29
GsuI	CTGGAG	1 cut(s)	636
HaeIII	GGCC	1 cut(s)	614
HapII	CCGG	1 cut(s)	248
Hin1I	GRCGYC	1 cut(s)	552
Hin1II	CATG	5 cut(s)	9, 731, 800, 940, 946
HincII	GTYRAC	1 cut(s)	1064
HindII	GTYRAC	1 cut(s)	1064
HindIII	AAGCTT	1 cut(s)	458
HinfI	GANTC	3 cut(s)	39, 335, 1020
HpaII	CCGG	1 cut(s)	248
HphI	GGTGA	2 cut(s)	461, 630
Hpy166II	GTNNAC	1 cut(s)	1064
Hpy188I	TCNGA	4 cut(s)	139, 604, 734, 825
Hpy188III	TCNNGA	7 cut(s)	248, 526, 578, 653, 943, 1015, 1029
Hpy8I	GTNNAC	1 cut(s)	1064
Hpy99I	CGWCG	2 cut(s)	1065, 1068
HpyAV	CCTTC	3 cut(s)	275, 580, 822
HpyCH4III	ACNGT	2 cut(s)	59, 757
HpyCH4IV	ACGT	2 cut(s)	532, 552
HpyCH4V	TGCA	7 cut(s)	275, 353, 370, 563, 847, 868, 936
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 371
HpyF3I	CTNAG	4 cut(s)	10, 383, 390, 514
HpySE526I	ACGT	2 cut(s)	532, 552
Hsp92I	GRCGYC	1 cut(s)	552
Hsp92II	CATG	5 cut(s)	9, 731, 800, 940, 946
Kpn2I	TCCGGA	1 cut(s)	247
Ksp22I	TGATCA	2 cut(s)	82, 954
Kzo9I	GATC	4 cut(s)	82, 261, 954, 1011
LmnI	GCTCC	2 cut(s)	180, 425
LweI	GCATC	2 cut(s)	29, 923
MaeI	CTAG	1 cut(s)	746
MaeII	ACGT	2 cut(s)	532, 552
MaeIII	GTNAC	1 cut(s)	636
MalI	GATC	4 cut(s)	84, 263, 956, 1013
MbiI	CCGCTC	2 cut(s)	175, 1005
MboI	GATC	4 cut(s)	82, 261, 954, 1011
MhlI	GDGCHC	1 cut(s)	809
MluCI	AATT	8 cut(s)	50, 98, 240, 318, 348, 772, 1032, 1112
MmeI	TCCRAC	1 cut(s)	574
MnlI	CCTC	8 cut(s)	9, 182, 656, 660, 689, 728, 853, 904
Mph1103I	ATGCAT	1 cut(s)	938
MroI	TCCGGA	1 cut(s)	247
MroXI	GAANNNNTTC	1 cut(s)	1024
MseI	TTAA	5 cut(s)	537, 659, 789, 1035, 1120
MslI	CAYNNNNRTG	2 cut(s)	93, 941
MspA1I	CMGCKG	1 cut(s)	394
MspI	CCGG	1 cut(s)	248
MspR9I	CCNGG	1 cut(s)	1043
MvaI	CCWGG	1 cut(s)	1043
MvnI	CGCG	1 cut(s)	1030
MwoI	GCNNNNNNNGC	2 cut(s)	26, 371
NdeII	GATC	4 cut(s)	82, 261, 954, 1011
NlaIII	CATG	5 cut(s)	9, 731, 800, 940, 946
NmuCI	GTSAC	1 cut(s)	636
NruI	TCGCGA	1 cut(s)	1030
NsiI	ATGCAT	1 cut(s)	938
NspI	RCATGY	2 cut(s)	9, 940
PaeI	GCATGC	1 cut(s)	9
PagI	TCATGA	1 cut(s)	942
PdmI	GAANNNNTTC	1 cut(s)	1024
PfeI	GAWTC	3 cut(s)	39, 335, 1020
PpuMI	RGGWCCY	1 cut(s)	862
Psp5II	RGGWCCY	1 cut(s)	862
Psp6I	CCWGG	1 cut(s)	1041
PspEI	GGTNACC	1 cut(s)	636
PspFI	CCCAGC	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	1041
PspPI	GGNCC	3 cut(s)	55, 612, 862
PspPPI	RGGWCCY	1 cut(s)	862
PvuII	CAGCTG	1 cut(s)	394
RruI	TCGCGA	1 cut(s)	1030
RsaI	GTAC	1 cut(s)	688
RsaNI	GTAC	1 cut(s)	687
RseI	CAYNNNNRTG	2 cut(s)	93, 941
SalI	GTCGAC	1 cut(s)	1062
SaqAI	TTAA	5 cut(s)	537, 659, 789, 1035, 1120
Sau3AI	GATC	4 cut(s)	82, 261, 954, 1011
Sau96I	GGNCC	3 cut(s)	55, 612, 862
ScrFI	CCNGG	1 cut(s)	1043
SduI	GDGCHC	1 cut(s)	809
SfaNI	GCATC	2 cut(s)	29, 923
SgrDI	CGTCGACG	1 cut(s)	1062
SinI	GGWCC	2 cut(s)	55, 862
SmiMI	CAYNNNNRTG	2 cut(s)	93, 941
SmlI	CTYRAG	1 cut(s)	1000
SmoI	CTYRAG	1 cut(s)	1000
SphI	GCATGC	1 cut(s)	9
Sse9I	AATT	8 cut(s)	50, 98, 240, 318, 348, 772, 1032, 1112
SsiI	CCGC	2 cut(s)	173, 1005
SspMI	CTAG	1 cut(s)	746
StyD4I	CCNGG	1 cut(s)	1041
StyI	CCWWGG	1 cut(s)	184
TaaI	ACNGT	2 cut(s)	59, 757
TaiI	ACGT	2 cut(s)	535, 555
TaqI	TCGA	1 cut(s)	1063
TasI	AATT	8 cut(s)	50, 98, 240, 318, 348, 772, 1032, 1112
TfiI	GAWTC	3 cut(s)	39, 335, 1020
Tru1I	TTAA	5 cut(s)	537, 659, 789, 1035, 1120
Tru9I	TTAA	5 cut(s)	537, 659, 789, 1035, 1120
TseFI	GTSAC	1 cut(s)	636
Tsp45I	GTSAC	1 cut(s)	636
TspDTI	ATGAA	3 cut(s)	111, 425, 931
TspGWI	ACGGA	2 cut(s)	708, 1013
VpaK11BI	GGWCC	2 cut(s)	55, 862
XapI	RAATTY	4 cut(s)	98, 240, 318, 772
XceI	RCATGY	2 cut(s)	9, 940
XcmI	CCANNNNNNNNNTGG	1 cut(s)	630
XmiI	GTMKAC	1 cut(s)	1063
XmnI	GAANNNNTTC	1 cut(s)	1024
XspI	CTAG	1 cut(s)	746
ZraI	GACGTC	1 cut(s)	553
Zsp2I	ATGCAT	1 cut(s)	938

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.