Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0009242

Physical Location & Seq

Genomic Coordinates Reverse (-)

55944245 .. 55948571

Gene Structure 4327 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009656

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGCGTGTTTAGAGAGGGCCTCCCCAGCTTTGAAGGAAATCCTGCTCAAATTATACCACAGTGCCAACAAGTCCACAGCGATTGATCATCACTTGTATGAATTTGGGTCTGTGGAATACCATATCCAGTCATCAGCTTCAGATGAACACATTATATACTTGTCAATATCAACTCCACTACTTACCCAAGAAGTCCTGTTACCATATGGGTTTTCACATCGTACCAAACAGATGGTAACAGCAATTTGTCCCGATGTTGTTGAGATCATTGAACCTGCAAAAGAAGGATACCAGCTTACTTTAAGGCTTGATTTTGCTAAATTGCCAAATGGAAAAGATTCACTGAAGGTAATTGCTGAGATTTCTGCTGTGCAAGCAAGAATATTAAGTTCTCGGCTCAAAGAAATTTTGAAGAATGCCAACTCCCACGATTCATATCAAGGGATGTACAAGCCAATCAAGCTTCTGTATCGCCCAAGTGAGCCTTTCTTCATAATTATACAGCCACAGAAAATCATAGCAGTATTCCCCATACATTTTACAGACAAACCAGATGTCATTATCGCAACAACCTTCTTTCAGGAACTTATGGATGTTGGAAGCTCTGAAAAATGGGCCAAAGCACCTCCTTGTTGCTGGTCACCAATTCCACCTCCAGAGTTAAGAGGGGAACTTTTTGAAGACTTGAGTACCACAGGAGGATTTGTGTCTTTTGAGATTTCTCCACGGCATGTCAAAGGTAAAAAACTGGACAAGACAGTATGGAGCTTATTGAATTTCTATGCCTATGTTAAATTCCATGTAAAGAGTACCAGAAGTTTTATTCAGAGAAGGATGAGAAAGCGCTTGGAGGGACTAGTTGAGCTCCTTCATAAGCGCAACACAAAAGTCAAAGATGAAGAAGAAGAAAAGCGAAGACGCAAGATTCAAGGATTCAAGTGTACGATAAGGATAGCCAATCTACCAAAACTTTCTGTCCTTAAACGAAGATATAATGGATTCAGCAGGACGATCAAGAGAATCCGATCTCGAATTAGAATCCATGGATTCGGGCGATTTCATCACCGATGGTTGAAAATACCAAAGTTCTCTTCTTCAATGGGGTATACCAAATTAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003779 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005885 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0008360 GO:0009653 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0022603 GO:0022604 GO:0022607 GO:0030029 GO:0030030 GO:0030031 GO:0030036 GO:0030832 GO:0030833 GO:0030838 GO:0030865 GO:0030866 GO:0031334 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0034314 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044085 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0045010 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0097435 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

P34-Arc

Protein Analysis

374

Amino Acids

43.2

Weight (kDa)

9.83

Isoelectric Point (pI)

54.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
P34-Arc	PF04045	91 - 292	7.8e-31	Arp2/3 complex, 34 kD subunit p34-Arc

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33385 AT2G33385 AT2G33385 AT2G33385
fragaria_vesca	FvH4_4g04380 FvH4_4g04380
malus_domestica	MD16G1224900.v1.1
prunus_persica	Prupe.1G046200_v2.0.a1 Prupe.1G046200_v2.0.a1 Prupe.1G046200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0394951
rosa_laevigata	RLG00000009656
rosa_multiflora	Rmu_sc0005802.1_g000026
rosa_roxburghii	Rroxscaffold_5G00339920
rosa_rugosa	Rorug03G0360500.1 Rorug03G0360600.1 Rorug03G0360700.1
rosa_samantha	Rh4AG056000 Rh4BG054600 Rh4CG060500 Rh4DG051900
rosa_wichuraiana	Rw4G004460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	283
AccI	GTMKAC	1 cut(s)	1106
AcsI	RAATTY	4 cut(s)	101, 405, 775, 794
AcuI	CTGAAG	2 cut(s)	123, 365
AfaI	GTAC	5 cut(s)	223, 449, 691, 811, 943
AfeI	AGCGCT	1 cut(s)	845
AgsI	TTSAA	9 cut(s)	34, 272, 412, 680, 775, 929, 937, 1075, 1098
AhlI	ACTAGT	1 cut(s)	856
AjuI	GAANNNNNNNTTGG	2 cut(s)	1075, 1107
AluBI	AGCT	7 cut(s)	29, 137, 295, 463, 603, 768, 865
AluI	AGCT	7 cut(s)	29, 137, 295, 463, 603, 768, 865
Alw21I	GWGCWC	1 cut(s)	867
Aor51HI	AGCGCT	1 cut(s)	845
AoxI	GGCC	2 cut(s)	18, 615
ApoI	RAATTY	4 cut(s)	101, 405, 775, 794
ArsI	GACNNNNNNTTYG	2 cut(s)	540, 572
Asp700I	GAANNNNTTC	1 cut(s)	337
AspLEI	GCGC	2 cut(s)	846, 879
AspS9I	GGNCC	2 cut(s)	18, 615
AsuHPI	GGTGA	2 cut(s)	633, 1055
BaeI	ACNNNNGTAYC	2 cut(s)	673, 706
BanII	GRGCYC	1 cut(s)	867
BarI	GAAGNNNNNNTAC	2 cut(s)	183, 215
BbsI	GAAGAC	2 cut(s)	687, 922
Bbv12I	GWGCWC	1 cut(s)	867
BccI	CCATC	2 cut(s)	226, 1062
BceAI	ACGGC	1 cut(s)	743
BciVI	GTATCC	1 cut(s)	281
BclI	TGATCA	1 cut(s)	85
BcuI	ACTAGT	1 cut(s)	856
BfaI	CTAG	1 cut(s)	857
BfoI	RGCGCY	1 cut(s)	847
BfuAI	ACCTGC	1 cut(s)	283
BfuI	GTATCC	1 cut(s)	281
BmgT120I	GGNCC	2 cut(s)	18, 615
BpiI	GAAGAC	2 cut(s)	687, 922
BplI	GAGNNNNNCTC	1 cut(s)	37
BpmI	CTGGAG	1 cut(s)	639
BpuEI	CTTGAG	1 cut(s)	706
BsaBI	GATNNNNATC	1 cut(s)	435
BsaJI	CCNNGG	2 cut(s)	725, 1042
BsaXI	ACNNNNNCTCC	2 cut(s)	690, 720
Bse1I	ACTGG	2 cut(s)	127, 753
Bse8I	GATNNNNATC	1 cut(s)	435
BseDI	CCNNGG	2 cut(s)	725, 1042
BseGI	GGATG	3 cut(s)	450, 598, 840
BseJI	GATNNNNATC	1 cut(s)	435
BseMII	CTCAG	1 cut(s)	348
BseNI	ACTGG	2 cut(s)	127, 753
BseYI	CCCAGC	1 cut(s)	25
BshFI	GGCC	2 cut(s)	20, 617
BsiHKAI	GWGCWC	1 cut(s)	867
BslFI	GGGAC	2 cut(s)	234, 867
BsmFI	GGGAC	2 cut(s)	234, 867
BsmI	GAATGC	1 cut(s)	421
BsnI	GGCC	2 cut(s)	20, 617
Bsp1286I	GDGCHC	1 cut(s)	867
Bsp1407I	TGTACA	1 cut(s)	447
Bsp143I	GATC	4 cut(s)	85, 264, 1011, 1025
Bsp19I	CCATGG	1 cut(s)	1042
BspANI	GGCC	2 cut(s)	20, 617
BspCNI	CTCAG	1 cut(s)	349
BspMI	ACCTGC	1 cut(s)	283
BsrGI	TGTACA	1 cut(s)	447
BsrI	ACTGG	2 cut(s)	127, 753
BssECI	CCNNGG	2 cut(s)	725, 1042
BssMI	GATC	4 cut(s)	85, 264, 1011, 1025
BssNAI	GTATAC	1 cut(s)	1107
BssT1I	CCWWGG	1 cut(s)	1042
Bst1107I	GTATAC	1 cut(s)	1107
Bst4CI	ACNGT	2 cut(s)	62, 760
Bst6I	CTCTTC	1 cut(s)	1096
BstAUI	TGTACA	1 cut(s)	447
BstC8I	GCNNGC	1 cut(s)	375
BstDEI	CTNAG	1 cut(s)	357
BstDSI	CCRYGG	2 cut(s)	725, 1042
BstEII	GGTNACC	1 cut(s)	639
BstF5I	GGATG	3 cut(s)	450, 598, 840
BstH2I	RGCGCY	1 cut(s)	847
BstHHI	GCGC	2 cut(s)	846, 879
BstKTI	GATC	4 cut(s)	88, 267, 1014, 1028
BstMBI	GATC	4 cut(s)	85, 264, 1011, 1025
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 374, 460
BstNSI	RCATGY	1 cut(s)	734
BstPI	GGTNACC	1 cut(s)	639
BstV2I	GAAGAC	2 cut(s)	687, 922
BstXI	CCANNNNNNTGG	1 cut(s)	232
BstZ17I	GTATAC	1 cut(s)	1107
BsuI	GTATCC	1 cut(s)	281
BsuRI	GGCC	2 cut(s)	20, 617
BtgI	CCRYGG	2 cut(s)	725, 1042
BtsCI	GGATG	3 cut(s)	450, 598, 840
BtsIMutI	CAGTG	2 cut(s)	67, 341
BveI	ACCTGC	1 cut(s)	283
Cac8I	GCNNGC	1 cut(s)	375
CfoI	GCGC	2 cut(s)	846, 879
Cfr13I	GGNCC	2 cut(s)	18, 615
CseI	GACGC	1 cut(s)	927
Csp6I	GTAC	5 cut(s)	222, 448, 690, 810, 942
CspCI	CAANNNNNGTGG	2 cut(s)	64, 99
CviAII	CATG	3 cut(s)	731, 800, 1043
CviQI	GTAC	5 cut(s)	222, 448, 690, 810, 942
DdeI	CTNAG	1 cut(s)	357
DpnI	GATC	4 cut(s)	87, 266, 1013, 1027
DpnII	GATC	4 cut(s)	85, 264, 1011, 1025
Eam1104I	CTCTTC	1 cut(s)	1096
EarI	CTCTTC	1 cut(s)	1096
Ecl136II	GAGCTC	1 cut(s)	865
Eco130I	CCWWGG	1 cut(s)	1042
Eco24I	GRGCYC	1 cut(s)	867
Eco47III	AGCGCT	1 cut(s)	845
Eco53kI	GAGCTC	1 cut(s)	865
Eco57I	CTGAAG	2 cut(s)	123, 365
Eco91I	GGTNACC	1 cut(s)	639
EcoICRI	GAGCTC	1 cut(s)	865
EcoO109I	RGGNCCY	1 cut(s)	18
EcoO65I	GGTNACC	1 cut(s)	639
EcoT14I	CCWWGG	1 cut(s)	1042
EcoT38I	GRGCYC	1 cut(s)	867
ErhI	CCWWGG	1 cut(s)	1042
FaeI	CATG	3 cut(s)	734, 803, 1046
FalI	AAGNNNNNCTT	2 cut(s)	469, 501
FaqI	GGGAC	2 cut(s)	234, 867
FatI	CATG	3 cut(s)	730, 799, 1042
FauNDI	CATATG	1 cut(s)	205
FbaI	TGATCA	1 cut(s)	85
FblI	GTMKAC	1 cut(s)	1106
FokI	GGATG	3 cut(s)	457, 605, 847
FriOI	GRGCYC	1 cut(s)	867
FspBI	CTAG	1 cut(s)	857
GlaI	GCGC	2 cut(s)	845, 878
GsaI	CCCAGC	1 cut(s)	29
GsuI	CTGGAG	1 cut(s)	639
HaeII	RGCGCY	1 cut(s)	847
HaeIII	GGCC	2 cut(s)	20, 617
HgaI	GACGC	1 cut(s)	927
HhaI	GCGC	2 cut(s)	846, 879
Hin1II	CATG	3 cut(s)	734, 803, 1046
Hin6I	GCGC	2 cut(s)	844, 877
HinP1I	GCGC	2 cut(s)	844, 877
HindIII	AAGCTT	1 cut(s)	461
HinfI	GANTC	8 cut(s)	338, 431, 925, 933, 999, 1020, 1038, 1047
HphI	GGTGA	2 cut(s)	633, 1055
Hpy166II	GTNNAC	3 cut(s)	75, 942, 1107
Hpy188I	TCNGA	4 cut(s)	142, 607, 828, 1025
Hpy188III	TCNNGA	5 cut(s)	251, 581, 656, 1015, 1029
Hpy8I	GTNNAC	3 cut(s)	75, 942, 1107
HpyAV	CCTTC	6 cut(s)	28, 278, 340, 583, 825, 878
HpyCH4III	ACNGT	2 cut(s)	62, 760
HpyCH4V	TGCA	2 cut(s)	278, 373
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 374, 460
HpyF3I	CTNAG	1 cut(s)	357
Hsp92II	CATG	3 cut(s)	734, 803, 1046
HspAI	GCGC	2 cut(s)	844, 877
Ksp22I	TGATCA	1 cut(s)	85
Kzo9I	GATC	4 cut(s)	85, 264, 1011, 1025
LmnI	GCTCC	2 cut(s)	765, 870
MaeI	CTAG	1 cut(s)	857
MaeIII	GTNAC	3 cut(s)	198, 235, 639
MalI	GATC	4 cut(s)	87, 266, 1013, 1027
MboI	GATC	4 cut(s)	85, 264, 1011, 1025
MhlI	GDGCHC	1 cut(s)	867
MmeI	TCCRAC	1 cut(s)	577
MnlI	CCTC	7 cut(s)	9, 31, 636, 659, 663, 692, 844
MroXI	GAANNNNTTC	1 cut(s)	337
MseI	TTAA	5 cut(s)	302, 386, 662, 792, 981
MslI	CAYNNNNRTG	1 cut(s)	96
Mva1269I	GAATGC	1 cut(s)	421
MwoI	GCNNNNNNNGC	3 cut(s)	26, 374, 460
NcoI	CCATGG	1 cut(s)	1042
NdeI	CATATG	1 cut(s)	205
NdeII	GATC	4 cut(s)	85, 264, 1011, 1025
NlaIII	CATG	3 cut(s)	734, 803, 1046
NmeAIII	GCCGAG	1 cut(s)	373
NmuCI	GTSAC	1 cut(s)	639
NspI	RCATGY	1 cut(s)	734
PctI	GAATGC	1 cut(s)	421
PdmI	GAANNNNTTC	1 cut(s)	337
PfeI	GAWTC	8 cut(s)	338, 431, 925, 933, 999, 1020, 1038, 1047
Psp124BI	GAGCTC	1 cut(s)	867
PspEI	GGTNACC	1 cut(s)	639
PspFI	CCCAGC	1 cut(s)	25
PspPI	GGNCC	2 cut(s)	18, 615
RsaI	GTAC	5 cut(s)	223, 449, 691, 811, 943
RsaNI	GTAC	5 cut(s)	222, 448, 690, 810, 942
RseI	CAYNNNNRTG	1 cut(s)	96
SacI	GAGCTC	1 cut(s)	867
SaqAI	TTAA	5 cut(s)	302, 386, 662, 792, 981
Sau3AI	GATC	4 cut(s)	85, 264, 1011, 1025
Sau96I	GGNCC	2 cut(s)	18, 615
SduI	GDGCHC	1 cut(s)	867
SmiMI	CAYNNNNRTG	1 cut(s)	96
SmlI	CTYRAG	1 cut(s)	685
SmoI	CTYRAG	1 cut(s)	685
SpeI	ACTAGT	1 cut(s)	856
SspI	AATATT	1 cut(s)	384
SspMI	CTAG	1 cut(s)	857
SstI	GAGCTC	1 cut(s)	867
StyI	CCWWGG	1 cut(s)	1042
TaaI	ACNGT	2 cut(s)	62, 760
TaqI	TCGA	1 cut(s)	1030
TatI	WGTACW	1 cut(s)	447
TfiI	GAWTC	8 cut(s)	338, 431, 925, 933, 999, 1020, 1038, 1047
Tru1I	TTAA	5 cut(s)	302, 386, 662, 792, 981
Tru9I	TTAA	5 cut(s)	302, 386, 662, 792, 981
TscAI	CASTG	2 cut(s)	67, 348
TseFI	GTSAC	1 cut(s)	639
Tsp45I	GTSAC	1 cut(s)	639
TspDTI	ATGAA	7 cut(s)	114, 159, 423, 481, 860, 912, 1049
TspRI	CASTG	2 cut(s)	67, 348
XapI	RAATTY	4 cut(s)	101, 405, 775, 794
XceI	RCATGY	1 cut(s)	734
XmiI	GTMKAC	1 cut(s)	1106
XmnI	GAANNNNTTC	1 cut(s)	337
XspI	CTAG	1 cut(s)	857

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.