Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0009242

Physical Location & Seq

Genomic Coordinates Forward (+)

22701146 .. 22704802

Gene Structure 3657 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1224900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGAGAGGTAGAAAATTTCCGGGAGTCAGGATGGCATGCTTAGAGAGGGCATCCCCAGCTTTGAAGGGAATTCTGCTCAAACGGTACCGTGACAGCAATTTCATGGAGATTGATCATCACTTATACGAATTCGGTTCTGTTGAATACCATATCCAGTCTTCGGCATCAGATACGCATTATATCTACTTGTCAGTGTCAACCCCGCTCCTTTCCCAGGGAGTCATGCGTCCGTATGGGATTTCGCAATATACTAAACAGATGGTAAAGGGAATTCGTCCTGACATTGTGGAGATTGTTGAACCTGCAAAAGAAGGATACCAGCTTACTTTAAGACTTGATTTTTCTGAGATTCCAAATGGAAAAGATTCTGTGAAGGTAATTGCAGACATTGCTGCCGTGCAAGCAGTAATCTTAAGTTCTCAGCTGAAAGAAATGTTGATGAATGTTAACCCTCAAGATGCATCGCAAGGAATGTATAAGCCACTCAAACTCGAATATCACCCAAGAGAGCCTTTCTTTATTATTAGACAGCCGCAGAAAATCATAGCAGTATTCCCGATACGTTTCAAAGACAAAACAGATGTCATTATTGCAACAGCATTCTTTCAGGAGCTTATGGATGTCGGAAGTTGTGAAAAATGGAGGAAAGTGCCTCCTTGTTGCTGGTCACCCATTCCACCTCCAGAGTTAAGAGGAGAAACTTTTGAAGATTTGAGTACGAATGGAGGATTTGTCTCTTTTGAGATTACTTCACGTCATGTCGAAGGTAAAAGACTGGACAAGACAGTATGGAGTTTACTGAATTTCTATGCCTATGTTAAATACCATGTAAAGAGCACCAGAAGTTTTATTCAGAGAAGGATGAGAAAGCGTCTTGAAGGACTGGTTGAGGTCCTGGGTAAGCGAAGAAACACAGAAGAAGAAGAAAAGGACGAGGAAGAGGAAAAAGAGGGAAACCACAAGGTTCCAGGATGCATGAACATGAGAAAACTGATCAAGATATCAAAACCTAAAGTCCTACAGCGAAGATATGATGACTTGAGCACGAAAATCAAGAGAATCCGTTGGCGGATTAAAATCCATGGCTTTGGGCGTTTTCGTCGTCGATGGTTGAAAATGCCAAAGTTTTCTTCTTCAATGGGATATATCAGATTAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003779 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005885 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0008360 GO:0009653 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0022603 GO:0022604 GO:0022607 GO:0030029 GO:0030030 GO:0030031 GO:0030036 GO:0030832 GO:0030833 GO:0030838 GO:0030865 GO:0030866 GO:0031334 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0034314 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044085 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0045010 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0097435 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

P34-Arc

Protein Analysis

387

Amino Acids

45.13

Weight (kDa)

9.71

Isoelectric Point (pI)

56.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
P34-Arc	PF04045	100 - 303	1.3e-31	Arp2/3 complex, 34 kD subunit p34-Arc

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33385 AT2G33385 AT2G33385 AT2G33385
fragaria_vesca	FvH4_4g04380 FvH4_4g04380
malus_domestica	MD16G1224900.v1.1
prunus_persica	Prupe.1G046200_v2.0.a1 Prupe.1G046200_v2.0.a1 Prupe.1G046200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0394951
rosa_laevigata	RLG00000009656
rosa_multiflora	Rmu_sc0005802.1_g000026
rosa_roxburghii	Rroxscaffold_5G00339920
rosa_rugosa	Rorug03G0360500.1 Rorug03G0360600.1 Rorug03G0360700.1
rosa_samantha	Rh4AG056000 Rh4BG054600 Rh4CG060500 Rh4DG051900
rosa_wichuraiana	Rw4G004460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	310
Acc65I	GGTACC	1 cut(s)	84
AccB1I	GGYRCC	1 cut(s)	84
AccBSI	CCGCTC	1 cut(s)	205
AciI	CCGC	3 cut(s)	203, 533, 1069
AcsI	RAATTY	5 cut(s)	14, 69, 128, 270, 802
AfaI	GTAC	2 cut(s)	86, 718
AfiI	CCNNNNNNNGG	2 cut(s)	160, 214
AflII	CTTAAG	1 cut(s)	412
AgsI	TTSAA	8 cut(s)	64, 143, 299, 568, 707, 878, 1114, 1137
AjiI	CACGTC	1 cut(s)	755
AjnI	CCWGG	3 cut(s)	213, 894, 967
AjuI	GAANNNNNNNTTGG	2 cut(s)	1114, 1146
AluBI	AGCT	4 cut(s)	59, 322, 424, 613
AluI	AGCT	4 cut(s)	59, 322, 424, 613
Alw21I	GWGCWC	2 cut(s)	839, 1046
Alw26I	GTCTC	1 cut(s)	739
ApeKI	GCWGC	1 cut(s)	392
ApoI	RAATTY	5 cut(s)	14, 69, 128, 270, 802
ArsI	GACNNNNNNTTYG	2 cut(s)	567, 599
Asp700I	GAANNNNTTC	1 cut(s)	364
Asp718I	GGTACC	1 cut(s)	84
AspS9I	GGNCC	1 cut(s)	892
AsuC2I	CCSGG	1 cut(s)	21
AsuHPI	GGTGA	2 cut(s)	491, 660
AvaII	GGWCC	1 cut(s)	892
BanI	GGYRCC	1 cut(s)	84
BbsI	GAAGAC	1 cut(s)	150
Bbv12I	GWGCWC	2 cut(s)	839, 1046
BbvI	GCAGC	1 cut(s)	379
BccI	CCATC	3 cut(s)	25, 253, 1101
BceAI	ACGGC	1 cut(s)	380
BciT130I	CCWGG	3 cut(s)	215, 896, 969
BciVI	GTATCC	1 cut(s)	308
BclI	TGATCA	2 cut(s)	112, 993
BcnI	CCSGG	1 cut(s)	21
BcoDI	GTCTC	1 cut(s)	739
BfmI	CTRYAG	1 cut(s)	1019
BfrI	CTTAAG	1 cut(s)	412
BfuAI	ACCTGC	1 cut(s)	310
BfuI	GTATCC	1 cut(s)	308
BisI	GCNGC	2 cut(s)	393, 533
BlsI	GCNGC	2 cut(s)	394, 534
Bme1390I	CCNGG	4 cut(s)	21, 215, 896, 969
Bme18I	GGWCC	1 cut(s)	892
BmgBI	CACGTC	1 cut(s)	755
BmgT120I	GGNCC	1 cut(s)	892
BmiI	GGNNCC	2 cut(s)	86, 966
BmrFI	CCNGG	4 cut(s)	21, 215, 896, 969
BmsI	GCATC	5 cut(s)	59, 173, 448, 470, 962
BpiI	GAAGAC	1 cut(s)	150
BpmI	CTGGAG	1 cut(s)	666
BpuEI	CTTGAG	2 cut(s)	438, 1060
BpuMI	CCSGG	1 cut(s)	21
BsaBI	GATNNNNATC	1 cut(s)	1076
BsaJI	CCNNGG	4 cut(s)	213, 214, 895, 1081
BsaXI	ACNNNNNCTCC	2 cut(s)	717, 747
Bsc4I	CCNNNNNNNGG	2 cut(s)	160, 214
Bse1I	ACTGG	3 cut(s)	154, 780, 888
Bse3DI	GCAATG	1 cut(s)	387
Bse8I	GATNNNNATC	1 cut(s)	1076
BseBI	CCWGG	3 cut(s)	215, 896, 969
BseDI	CCNNGG	4 cut(s)	213, 214, 895, 1081
BseGI	GGATG	5 cut(s)	36, 50, 625, 867, 977
BseJI	GATNNNNATC	1 cut(s)	1076
BseLI	CCNNNNNNNGG	2 cut(s)	160, 214
BseMI	GCAATG	1 cut(s)	387
BseMII	CTCAG	2 cut(s)	336, 434
BseNI	ACTGG	3 cut(s)	154, 780, 888
BseRI	GAGGAG	1 cut(s)	708
BseXI	GCAGC	1 cut(s)	379
BseYI	CCCAGC	1 cut(s)	55
BshNI	GGYRCC	1 cut(s)	84
BsiHKAI	GWGCWC	2 cut(s)	839, 1046
BsiSI	CCGG	1 cut(s)	20
BslI	CCNNNNNNNGG	2 cut(s)	160, 214
BsmAI	GTCTC	1 cut(s)	739
BsmI	GAATGC	1 cut(s)	599
Bsp1286I	GDGCHC	2 cut(s)	839, 1046
Bsp143I	GATC	2 cut(s)	112, 993
Bsp19I	CCATGG	1 cut(s)	1081
BspACI	CCGC	3 cut(s)	203, 533, 1069
BspCNI	CTCAG	2 cut(s)	337, 433
BspLI	GGNNCC	2 cut(s)	86, 966
BspMI	ACCTGC	1 cut(s)	310
BspT107I	GGYRCC	1 cut(s)	84
BspTI	CTTAAG	1 cut(s)	412
BsrBI	CCGCTC	1 cut(s)	205
BsrDI	GCAATG	1 cut(s)	387
BsrI	ACTGG	3 cut(s)	154, 780, 888
BssECI	CCNNGG	4 cut(s)	213, 214, 895, 1081
BssMI	GATC	2 cut(s)	112, 993
BssT1I	CCWWGG	1 cut(s)	1081
Bst2UI	CCWGG	3 cut(s)	215, 896, 969
Bst4CI	ACNGT	3 cut(s)	84, 89, 787
Bst6I	CTCTTC	1 cut(s)	933
BstAFI	CTTAAG	1 cut(s)	412
BstAPI	GCANNNNNTGC	1 cut(s)	389
BstC8I	GCNNGC	2 cut(s)	37, 402
BstDEI	CTNAG	3 cut(s)	40, 345, 420
BstDSI	CCRYGG	1 cut(s)	1081
BstEII	GGTNACC	1 cut(s)	666
BstENI	CCTNNNNNAGG	1 cut(s)	212
BstF5I	GGATG	5 cut(s)	36, 50, 625, 867, 977
BstKTI	GATC	2 cut(s)	115, 996
BstMAI	GTCTC	1 cut(s)	739
BstMBI	GATC	2 cut(s)	112, 993
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 389, 401
BstNI	CCWGG	3 cut(s)	215, 896, 969
BstNSI	RCATGY	1 cut(s)	39
BstPI	GGTNACC	1 cut(s)	666
BstSCI	CCNGG	4 cut(s)	19, 213, 894, 967
BstSFI	CTRYAG	1 cut(s)	1019
BstV1I	GCAGC	1 cut(s)	379
BstV2I	GAAGAC	1 cut(s)	150
BstXI	CCANNNNNNTGG	1 cut(s)	1088
BsuI	GTATCC	1 cut(s)	308
BtgI	CCRYGG	1 cut(s)	1081
BtgZI	GCGATG	1 cut(s)	447
BtrI	CACGTC	1 cut(s)	755
BtsCI	GGATG	5 cut(s)	36, 50, 625, 867, 977
BtsIMutI	CAGTG	1 cut(s)	198
BveI	ACCTGC	1 cut(s)	310
Cac8I	GCNNGC	2 cut(s)	37, 402
Cfr13I	GGNCC	1 cut(s)	892
CseI	GACGC	2 cut(s)	215, 860
Csp6I	GTAC	2 cut(s)	85, 717
CviAII	CATG	8 cut(s)	36, 103, 223, 758, 827, 976, 982, 1082
CviJI	RGCY	8 cut(s)	59, 322, 424, 481, 511, 532, 613, 1086
CviKI_1	RGCY	8 cut(s)	59, 322, 424, 481, 511, 532, 613, 1086
CviQI	GTAC	2 cut(s)	85, 717
DdeI	CTNAG	3 cut(s)	40, 345, 420
DpnI	GATC	2 cut(s)	114, 995
DpnII	GATC	2 cut(s)	112, 993
Eam1104I	CTCTTC	1 cut(s)	933
EarI	CTCTTC	1 cut(s)	933
EciI	GGCGGA	1 cut(s)	1084
Eco130I	CCWWGG	1 cut(s)	1081
Eco32I	GATATC	1 cut(s)	1002
Eco47I	GGWCC	1 cut(s)	892
Eco91I	GGTNACC	1 cut(s)	666
EcoNI	CCTNNNNNAGG	1 cut(s)	212
EcoO109I	RGGNCCY	1 cut(s)	892
EcoO65I	GGTNACC	1 cut(s)	666
EcoRI	GAATTC	3 cut(s)	69, 128, 270
EcoRII	CCWGG	3 cut(s)	213, 894, 967
EcoRV	GATATC	1 cut(s)	1002
EcoT14I	CCWWGG	1 cut(s)	1081
EcoT22I	ATGCAT	2 cut(s)	463, 977
ErhI	CCWWGG	1 cut(s)	1081
FaeI	CATG	8 cut(s)	39, 106, 226, 761, 830, 979, 985, 1085
FalI	AAGNNNNNCTT	2 cut(s)	496, 528
FatI	CATG	8 cut(s)	35, 102, 222, 757, 826, 975, 981, 1081
FauI	CCCGC	1 cut(s)	210
FbaI	TGATCA	2 cut(s)	112, 993
Fnu4HI	GCNGC	2 cut(s)	393, 533
FokI	GGATG	5 cut(s)	37, 43, 632, 874, 984
Fsp4HI	GCNGC	2 cut(s)	393, 533
GluI	GCNGC	2 cut(s)	393, 533
GsaI	CCCAGC	1 cut(s)	59
GsuI	CTGGAG	1 cut(s)	666
HapII	CCGG	1 cut(s)	20
HgaI	GACGC	2 cut(s)	215, 860
Hin1II	CATG	8 cut(s)	39, 106, 226, 761, 830, 979, 985, 1085
HincII	GTYRAC	2 cut(s)	198, 448
HindII	GTYRAC	2 cut(s)	198, 448
HinfI	GANTC	5 cut(s)	24, 219, 349, 365, 1059
HpaI	GTTAAC	1 cut(s)	448
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	2 cut(s)	491, 660
Hpy166II	GTNNAC	3 cut(s)	198, 448, 797
Hpy188I	TCNGA	5 cut(s)	169, 346, 626, 855, 1151
Hpy188III	TCNNGA	9 cut(s)	28, 278, 455, 556, 608, 683, 875, 997, 1054
Hpy8I	GTNNAC	3 cut(s)	198, 448, 797
Hpy99I	CGWCG	2 cut(s)	1104, 1107
HpyAV	CCTTC	6 cut(s)	58, 305, 367, 758, 852, 872
HpyCH4III	ACNGT	3 cut(s)	84, 89, 787
HpyCH4IV	ACGT	2 cut(s)	562, 754
HpyCH4V	TGCA	6 cut(s)	305, 383, 400, 461, 593, 975
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 389, 401
HpyF3I	CTNAG	3 cut(s)	40, 345, 420
HpySE526I	ACGT	2 cut(s)	562, 754
Hsp92II	CATG	8 cut(s)	39, 106, 226, 761, 830, 979, 985, 1085
KpnI	GGTACC	1 cut(s)	88
Ksp22I	TGATCA	2 cut(s)	112, 993
KspAI	GTTAAC	1 cut(s)	448
Kzo9I	GATC	2 cut(s)	112, 993
LmnI	GCTCC	2 cut(s)	210, 610
Lsp1109I	GCAGC	1 cut(s)	379
LweI	GCATC	5 cut(s)	59, 173, 448, 470, 962
MaeII	ACGT	2 cut(s)	562, 754
MaeIII	GTNAC	2 cut(s)	89, 666
MalI	GATC	2 cut(s)	114, 995
MbiI	CCGCTC	1 cut(s)	205
MboI	GATC	2 cut(s)	112, 993
MhlI	GDGCHC	2 cut(s)	839, 1046
MluCI	AATT	7 cut(s)	14, 69, 97, 128, 270, 378, 802
MlyI	GAGTC	2 cut(s)	33, 228
MmeI	TCCRAC	1 cut(s)	604
Mph1103I	ATGCAT	2 cut(s)	463, 977
MroXI	GAANNNNTTC	1 cut(s)	364
MseI	TTAA	6 cut(s)	329, 413, 447, 689, 819, 1074
MslI	CAYNNNNRTG	1 cut(s)	980
MspA1I	CMGCKG	1 cut(s)	424
MspCI	CTTAAG	1 cut(s)	412
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	4 cut(s)	21, 215, 896, 969
Mva1269I	GAATGC	1 cut(s)	599
MvaI	CCWGG	3 cut(s)	215, 896, 969
MwoI	GCNNNNNNNGC	3 cut(s)	56, 389, 401
NciI	CCSGG	1 cut(s)	21
NcoI	CCATGG	1 cut(s)	1081
NdeII	GATC	2 cut(s)	112, 993
NlaIII	CATG	8 cut(s)	39, 106, 226, 761, 830, 979, 985, 1085
NlaIV	GGNNCC	2 cut(s)	86, 966
NmuCI	GTSAC	2 cut(s)	89, 666
NsiI	ATGCAT	2 cut(s)	463, 977
NspI	RCATGY	1 cut(s)	39
PaeI	GCATGC	1 cut(s)	39
PasI	CCCWGGG	1 cut(s)	214
PctI	GAATGC	1 cut(s)	599
PdmI	GAANNNNTTC	1 cut(s)	364
PfeI	GAWTC	3 cut(s)	349, 365, 1059
PfoI	TCCNGGA	2 cut(s)	19, 967
PkrI	GCNGC	2 cut(s)	394, 534
PleI	GAGTC	2 cut(s)	32, 227
PpsI	GAGTC	2 cut(s)	32, 227
PpuMI	RGGWCCY	1 cut(s)	892
Psp5II	RGGWCCY	1 cut(s)	892
Psp6I	CCWGG	3 cut(s)	213, 894, 967
PspEI	GGTNACC	1 cut(s)	666
PspFI	CCCAGC	1 cut(s)	55
PspGI	CCWGG	3 cut(s)	213, 894, 967
PspN4I	GGNNCC	2 cut(s)	86, 966
PspPI	GGNCC	1 cut(s)	892
PspPPI	RGGWCCY	1 cut(s)	892
PvuII	CAGCTG	1 cut(s)	424
RsaI	GTAC	2 cut(s)	86, 718
RsaNI	GTAC	2 cut(s)	85, 717
RseI	CAYNNNNRTG	1 cut(s)	980
SaqAI	TTAA	6 cut(s)	329, 413, 447, 689, 819, 1074
SatI	GCNGC	2 cut(s)	393, 533
Sau3AI	GATC	2 cut(s)	112, 993
Sau96I	GGNCC	1 cut(s)	892
SchI	GAGTC	2 cut(s)	33, 228
ScrFI	CCNGG	4 cut(s)	21, 215, 896, 969
SduI	GDGCHC	2 cut(s)	839, 1046
SfaNI	GCATC	5 cut(s)	59, 173, 448, 470, 962
SfcI	CTRYAG	1 cut(s)	1019
SinI	GGWCC	1 cut(s)	892
SmiMI	CAYNNNNRTG	1 cut(s)	980
SmlI	CTYRAG	3 cut(s)	412, 453, 1039
SmoI	CTYRAG	3 cut(s)	412, 453, 1039
SphI	GCATGC	1 cut(s)	39
Sse9I	AATT	7 cut(s)	14, 69, 97, 128, 270, 378, 802
SsiI	CCGC	3 cut(s)	203, 533, 1069
StyD4I	CCNGG	4 cut(s)	19, 213, 894, 967
StyI	CCWWGG	1 cut(s)	1081
TaaI	ACNGT	3 cut(s)	84, 89, 787
TaiI	ACGT	2 cut(s)	565, 757
TaqI	TCGA	3 cut(s)	492, 762, 1105
TasI	AATT	7 cut(s)	14, 69, 97, 128, 270, 378, 802
TauI	GCSGC	1 cut(s)	535
TfiI	GAWTC	3 cut(s)	349, 365, 1059
Tru1I	TTAA	6 cut(s)	329, 413, 447, 689, 819, 1074
Tru9I	TTAA	6 cut(s)	329, 413, 447, 689, 819, 1074
TscAI	CASTG	1 cut(s)	198
TseFI	GTSAC	2 cut(s)	89, 666
TseI	GCWGC	1 cut(s)	392
Tsp45I	GTSAC	2 cut(s)	89, 666
TspDTI	ATGAA	3 cut(s)	91, 455, 992
TspGWI	ACGGA	2 cut(s)	219, 1052
TspRI	CASTG	1 cut(s)	198
Vha464I	CTTAAG	1 cut(s)	412
VpaK11BI	GGWCC	1 cut(s)	892
XagI	CCTNNNNNAGG	1 cut(s)	212
XapI	RAATTY	5 cut(s)	14, 69, 128, 270, 802
XceI	RCATGY	1 cut(s)	39
XmnI	GAANNNNTTC	1 cut(s)	364
Zsp2I	ATGCAT	2 cut(s)	463, 977

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.