Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0009242

Physical Location & Seq

Genomic Coordinates Forward (+)

8183063 .. 8200399

Gene Structure 17337 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG051900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGATAAAGAAGGAAACAATCAAAACCTGTCAGTGTTCTTGCAATACTGATACTCATTCTGATGATCATTATTGTTGCTTTCACAGCAGTGCCAACAAGTCCACAGAGATTGATCATCACTTGTATGAATTTGGGTCTGTGGAATACCATATCCAGTCATCAGCTTCAGATGAACACATTACATACTTGTCAATATCAACTCCACTACTTACCCACGAAGTCCTGTTACCATATGGGTTTTCACATCGTACCAAACAGATGGTAACAGCAATTTGTCCTGATGTTGTTGAGATCATTGAACCTGCAAAAGAAGGATACCAGCTTACTTTAAGGCTTGATTTTGCTAAATTGCCAAATGGAAAAGATTCACTGAAGGTAATTGCTGAGATTTCTGCTGTGCAAGCAAGAATATTAAGTTCTCGGCTCAAAGAAATTTTGATGAATGTCAACTCCCACGATTCATATCAAGGGATGTATAAGCCAATCAAGCTTCTGTATCGCCCAAGTGAGCCTTTCTTCATAATTATACAGCCACAGAAAATCATAGCAGTATTCCCCATACATTTTAAAGACAAACCAGATGTCATTATCGCAACAACCTTCTTTCAGGAACTTATGGATGTTGGAAGCTCCGAAAAATGGGCCAAAGCACCTCGTTGTTGCTGGTCACCAATTCCACCTCCAGAGTTAAGAGGGGAACTTTTTCAAGACTTGAGTACCACAGGAGGATTTGTGTCTTTTGGTATATACTTACGCCCCAATATTTTTGTGCAGAAACCACACATCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003779 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005885 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0008360 GO:0009653 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0022603 GO:0022604 GO:0022607 GO:0030029 GO:0030030 GO:0030031 GO:0030036 GO:0030832 GO:0030833 GO:0030838 GO:0030865 GO:0030866 GO:0031334 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0034314 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044085 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0045010 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0097435 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

P34-Arc

Protein Analysis

263

Amino Acids

29.94

Weight (kDa)

6.63

Isoelectric Point (pI)

44.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
P34-Arc	PF04045	100 - 251	6.2e-18	Arp2/3 complex, 34 kD subunit p34-Arc

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33385 AT2G33385 AT2G33385 AT2G33385
fragaria_vesca	FvH4_4g04380 FvH4_4g04380
malus_domestica	MD16G1224900.v1.1
prunus_persica	Prupe.1G046200_v2.0.a1 Prupe.1G046200_v2.0.a1 Prupe.1G046200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0394951
rosa_laevigata	RLG00000009656
rosa_multiflora	Rmu_sc0005802.1_g000026
rosa_roxburghii	Rroxscaffold_5G00339920
rosa_rugosa	Rorug03G0360500.1 Rorug03G0360600.1 Rorug03G0360700.1
rosa_samantha	Rh4AG056000 Rh4BG054600 Rh4CG060500 Rh4DG051900
rosa_wichuraiana	Rw4G004460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	310
AcsI	RAATTY	2 cut(s)	128, 432
AcuI	CTGAAG	2 cut(s)	150, 392
AfaI	GTAC	2 cut(s)	250, 718
AfiI	CCNNNNNNNGG	1 cut(s)	639
AgsI	TTSAA	2 cut(s)	299, 707
AleI	CACNNNNGTG	1 cut(s)	87
AluBI	AGCT	4 cut(s)	164, 322, 490, 630
AluI	AGCT	4 cut(s)	164, 322, 490, 630
AoxI	GGCC	1 cut(s)	642
ApoI	RAATTY	2 cut(s)	128, 432
ArsI	GACNNNNNNTTYG	2 cut(s)	567, 599
Asp700I	GAANNNNTTC	2 cut(s)	364, 702
AspS9I	GGNCC	1 cut(s)	642
AsuHPI	GGTGA	1 cut(s)	660
BaeI	ACNNNNGTAYC	2 cut(s)	700, 733
BarI	GAAGNNNNNNTAC	2 cut(s)	210, 242
BccI	CCATC	1 cut(s)	253
BciVI	GTATCC	1 cut(s)	308
BclI	TGATCA	2 cut(s)	64, 112
BfuAI	ACCTGC	1 cut(s)	310
BfuI	GTATCC	1 cut(s)	308
BmgT120I	GGNCC	1 cut(s)	642
BpmI	CTGGAG	1 cut(s)	666
BpuEI	CTTGAG	1 cut(s)	733
BsaBI	GATNNNNATC	1 cut(s)	462
BsaXI	ACNNNNNCTCC	2 cut(s)	717, 747
Bsc4I	CCNNNNNNNGG	1 cut(s)	639
Bse1I	ACTGG	1 cut(s)	154
Bse8I	GATNNNNATC	1 cut(s)	462
BseGI	GGATG	2 cut(s)	477, 625
BseJI	GATNNNNATC	1 cut(s)	462
BseLI	CCNNNNNNNGG	1 cut(s)	639
BseMII	CTCAG	1 cut(s)	375
BseNI	ACTGG	1 cut(s)	154
BsgI	GTGCAG	1 cut(s)	791
BshFI	GGCC	1 cut(s)	644
BslI	CCNNNNNNNGG	1 cut(s)	639
BsnI	GGCC	1 cut(s)	644
Bsp143I	GATC	3 cut(s)	64, 112, 291
BspANI	GGCC	1 cut(s)	644
BspCNI	CTCAG	1 cut(s)	376
BspMI	ACCTGC	1 cut(s)	310
BsrI	ACTGG	1 cut(s)	154
BssMI	GATC	3 cut(s)	64, 112, 291
BstC8I	GCNNGC	1 cut(s)	402
BstDEI	CTNAG	1 cut(s)	384
BstEII	GGTNACC	1 cut(s)	666
BstF5I	GGATG	2 cut(s)	477, 625
BstKTI	GATC	3 cut(s)	67, 115, 294
BstMBI	GATC	3 cut(s)	64, 112, 291
BstMWI	GCNNNNNNNGC	3 cut(s)	84, 401, 487
BstPI	GGTNACC	1 cut(s)	666
BstXI	CCANNNNNNTGG	1 cut(s)	259
BsuI	GTATCC	1 cut(s)	308
BsuRI	GGCC	1 cut(s)	644
BtsCI	GGATG	2 cut(s)	477, 625
BtsI	GCAGTG	1 cut(s)	94
BtsIMutI	CAGTG	3 cut(s)	38, 94, 368
BveI	ACCTGC	1 cut(s)	310
Cac8I	GCNNGC	1 cut(s)	402
Cfr13I	GGNCC	1 cut(s)	642
Csp6I	GTAC	2 cut(s)	249, 717
CspCI	CAANNNNNGTGG	2 cut(s)	91, 126
CviQI	GTAC	2 cut(s)	249, 717
DdeI	CTNAG	1 cut(s)	384
DpnI	GATC	3 cut(s)	66, 114, 293
DpnII	GATC	3 cut(s)	64, 112, 291
DraI	TTTAAA	1 cut(s)	568
Eco57I	CTGAAG	2 cut(s)	150, 392
Eco91I	GGTNACC	1 cut(s)	666
EcoO65I	GGTNACC	1 cut(s)	666
FalI	AAGNNNNNCTT	2 cut(s)	496, 528
FauNDI	CATATG	1 cut(s)	232
FbaI	TGATCA	2 cut(s)	64, 112
FokI	GGATG	2 cut(s)	484, 632
GsuI	CTGGAG	1 cut(s)	666
HaeIII	GGCC	1 cut(s)	644
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HindIII	AAGCTT	1 cut(s)	488
HinfI	GANTC	2 cut(s)	365, 458
HphI	GGTGA	1 cut(s)	660
Hpy166II	GTNNAC	2 cut(s)	102, 448
Hpy188I	TCNGA	3 cut(s)	61, 169, 634
Hpy188III	TCNNGA	4 cut(s)	278, 608, 683, 707
Hpy8I	GTNNAC	2 cut(s)	102, 448
HpyAV	CCTTC	4 cut(s)	4, 305, 367, 610
HpyCH4V	TGCA	4 cut(s)	42, 305, 400, 772
HpyF10VI	GCNNNNNNNGC	3 cut(s)	84, 401, 487
HpyF3I	CTNAG	1 cut(s)	384
Ksp22I	TGATCA	2 cut(s)	64, 112
Kzo9I	GATC	3 cut(s)	64, 112, 291
LmnI	GCTCC	1 cut(s)	635
MaeIII	GTNAC	3 cut(s)	225, 262, 666
MalI	GATC	3 cut(s)	66, 114, 293
MboI	GATC	3 cut(s)	64, 112, 291
MboII	GAAGA	1 cut(s)	508
MluCI	AATT	7 cut(s)	128, 270, 347, 378, 432, 522, 672
MmeI	TCCRAC	1 cut(s)	604
MnlI	CCTC	4 cut(s)	663, 686, 690, 719
MroXI	GAANNNNTTC	2 cut(s)	364, 702
MseI	TTAA	4 cut(s)	329, 413, 567, 689
MslI	CAYNNNNRTG	3 cut(s)	60, 87, 123
MwoI	GCNNNNNNNGC	3 cut(s)	84, 401, 487
NdeI	CATATG	1 cut(s)	232
NdeII	GATC	3 cut(s)	64, 112, 291
NmeAIII	GCCGAG	1 cut(s)	400
NmuCI	GTSAC	1 cut(s)	666
OliI	CACNNNNGTG	1 cut(s)	87
PdmI	GAANNNNTTC	2 cut(s)	364, 702
PfeI	GAWTC	2 cut(s)	365, 458
PspEI	GGTNACC	1 cut(s)	666
PspPI	GGNCC	1 cut(s)	642
RsaI	GTAC	2 cut(s)	250, 718
RsaNI	GTAC	2 cut(s)	249, 717
RseI	CAYNNNNRTG	3 cut(s)	60, 87, 123
SaqAI	TTAA	4 cut(s)	329, 413, 567, 689
Sau3AI	GATC	3 cut(s)	64, 112, 291
Sau96I	GGNCC	1 cut(s)	642
SmiMI	CAYNNNNRTG	3 cut(s)	60, 87, 123
SmlI	CTYRAG	1 cut(s)	712
SmoI	CTYRAG	1 cut(s)	712
Sse9I	AATT	7 cut(s)	128, 270, 347, 378, 432, 522, 672
SspI	AATATT	2 cut(s)	411, 763
TasI	AATT	7 cut(s)	128, 270, 347, 378, 432, 522, 672
TfiI	GAWTC	2 cut(s)	365, 458
Tru1I	TTAA	4 cut(s)	329, 413, 567, 689
Tru9I	TTAA	4 cut(s)	329, 413, 567, 689
TscAI	CASTG	3 cut(s)	38, 94, 375
TseFI	GTSAC	1 cut(s)	666
Tsp45I	GTSAC	1 cut(s)	666
TspDTI	ATGAA	5 cut(s)	141, 186, 450, 455, 508
TspRI	CASTG	3 cut(s)	38, 94, 375
XapI	RAATTY	2 cut(s)	128, 432
XmnI	GAANNNNTTC	2 cut(s)	364, 702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.