Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009242

Physical Location & Seq

Genomic Coordinates Forward (+)

10750455 .. 10755161

Gene Structure 4707 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36742

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGAGAAAGAAGGGGATATCTCTCAGTATGGCGTGTTTAGAGAGGGCCTCTCCAGCTTTGAAGGAAATCCTGCTCAAACTATACCATGCCAACAAGTCCACAGAGATTGATCATCACTTGTATGAATTTGGGTCTGTGGAATACCATATCCAGTCATCAGCTTCAGATGAACACATTACATACTTGTCAATATCAACTCCACTACTTACCCAAGAAGTCCTGTTACCATATGGGTTTTCACATCGTACCAAACAGATGGTAACAGCAATTTGTCCTGATGCTGTTGAGATCATTGAACCTGCAAAAGAAGGATACCAGCTTACTTTAAGGCTTGATTTTGCTAAATTGCCAAACGGAAAAGATTCACTGAAGGTAATTGCTGAGATTTCTGCTGTGCAAGCAAGAATATTAAGTTCTCGGCTTAAAGAAATTTTGATGAATGTCAACTCCCAAGATTCATATCAAGGGATGTATAAGCCAATCAAGCTTGTGTATCGCCCAAGTGAGCCTTTCTTCATAATTATACAGCCACAGAAAATCATAGCAGTATTCCCCATACATTTTACAGACAAACCAGATGTCATTATCGCAACAACCTTCTTTCAGGAACTTATGGATGTTGGAAGCTCTGAAAAATGGGCCAAAGCACCTCCTTGTTGCTGGTCACCAATTCCACCTCCAGGGTTAAGAGGGGAACTTTTTGAAGACTTGAGTACCACAGGAGGATTTGTGTCTTTTGAGATTTCTCCACGGCATGTCAAAGGTAAAAAACTGGACAAGACAGTATGGAGCTTATTGAATTTCTATGCCTATGTTAAATTCCATGTAAAGAGTACCAGAAGTTTTATTCAGAGAAGGATGAGAAAGCGTTTGGAGGGACTAGTTGAGCTCCTTCATAAGCGCAACATAAAAGTCGAAGATGAAGAAGAAGAAAAGCGAAGACACAAGATTCAAGGATTCAAGTGTACGATAAGGATAGCCAATCTACCAAAACTTTCTGTCCTTAAACGAAGATATAATGGATTCAGCAGGACGATCAAGAGAATCCGATCTCGAATTAGAATCCATGGATTCGGGCGATTTCGTCACCGATGGTTGAAAATACCAAAGTTCTCTTCTTCAATGGGGTATACCAAATTAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003779 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005885 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0008360 GO:0009653 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0022603 GO:0022604 GO:0022607 GO:0030029 GO:0030030 GO:0030031 GO:0030036 GO:0030832 GO:0030833 GO:0030838 GO:0030865 GO:0030866 GO:0031334 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0034314 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044085 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0045010 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0097435 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

P34-Arc

Protein Analysis

381

Amino Acids

44.08

Weight (kDa)

9.83

Isoelectric Point (pI)

56.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
P34-Arc	PF04045	99 - 300	1e-29	Arp2/3 complex, 34 kD subunit p34-Arc

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33385 AT2G33385 AT2G33385 AT2G33385
fragaria_vesca	FvH4_4g04380 FvH4_4g04380
malus_domestica	MD16G1224900.v1.1
prunus_persica	Prupe.1G046200_v2.0.a1 Prupe.1G046200_v2.0.a1 Prupe.1G046200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0394951
rosa_laevigata	RLG00000009656
rosa_multiflora	Rmu_sc0005802.1_g000026
rosa_roxburghii	Rroxscaffold_5G00339920
rosa_rugosa	Rorug03G0360500.1 Rorug03G0360600.1 Rorug03G0360700.1
rosa_samantha	Rh4AG056000 Rh4BG054600 Rh4CG060500 Rh4DG051900
rosa_wichuraiana	Rw4G004460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	307
AccI	GTMKAC	1 cut(s)	1130
AcsI	RAATTY	4 cut(s)	125, 429, 799, 818
AcuI	CTGAAG	2 cut(s)	147, 389
AfaI	GTAC	4 cut(s)	247, 715, 835, 967
AfiI	CCNNNNNNNGG	1 cut(s)	680
AgsI	TTSAA	8 cut(s)	61, 296, 704, 799, 953, 961, 1099, 1122
AhlI	ACTAGT	1 cut(s)	880
AjnI	CCWGG	1 cut(s)	679
AjuI	GAANNNNNNNTTGG	2 cut(s)	1099, 1131
AluBI	AGCT	7 cut(s)	56, 161, 319, 487, 627, 792, 889
AluI	AGCT	7 cut(s)	56, 161, 319, 487, 627, 792, 889
Alw21I	GWGCWC	1 cut(s)	891
AoxI	GGCC	2 cut(s)	45, 639
ApoI	RAATTY	4 cut(s)	125, 429, 799, 818
ArsI	GACNNNNNNTTYG	2 cut(s)	564, 596
Asp700I	GAANNNNTTC	1 cut(s)	361
AspLEI	GCGC	1 cut(s)	903
AspS9I	GGNCC	2 cut(s)	45, 639
AsuHPI	GGTGA	2 cut(s)	657, 1079
BaeI	ACNNNNGTAYC	2 cut(s)	697, 730
BanII	GRGCYC	1 cut(s)	891
BarI	GAAGNNNNNNTAC	2 cut(s)	207, 239
BbsI	GAAGAC	2 cut(s)	711, 946
Bbv12I	GWGCWC	1 cut(s)	891
BccI	CCATC	2 cut(s)	250, 1086
BceAI	ACGGC	1 cut(s)	767
BciT130I	CCWGG	1 cut(s)	681
BciVI	GTATCC	1 cut(s)	305
BclI	TGATCA	1 cut(s)	109
BcuI	ACTAGT	1 cut(s)	880
BfaI	CTAG	1 cut(s)	881
BfuAI	ACCTGC	1 cut(s)	307
BfuI	GTATCC	1 cut(s)	305
Bme1390I	CCNGG	1 cut(s)	681
BmgT120I	GGNCC	2 cut(s)	45, 639
BmrFI	CCNGG	1 cut(s)	681
BmsI	GCATC	1 cut(s)	268
BpiI	GAAGAC	2 cut(s)	711, 946
BplI	GAGNNNNNCTC	4 cut(s)	32, 64, 34, 66
BpmI	CTGGAG	2 cut(s)	36, 663
BpuEI	CTTGAG	1 cut(s)	730
BsaBI	GATNNNNATC	1 cut(s)	459
BsaJI	CCNNGG	3 cut(s)	680, 749, 1066
BsaXI	ACNNNNNCTCC	2 cut(s)	714, 744
Bsc4I	CCNNNNNNNGG	1 cut(s)	680
Bse1I	ACTGG	2 cut(s)	151, 777
Bse8I	GATNNNNATC	1 cut(s)	459
BseBI	CCWGG	1 cut(s)	681
BseDI	CCNNGG	3 cut(s)	680, 749, 1066
BseGI	GGATG	3 cut(s)	474, 622, 864
BseJI	GATNNNNATC	1 cut(s)	459
BseLI	CCNNNNNNNGG	1 cut(s)	680
BseMII	CTCAG	2 cut(s)	37, 372
BseNI	ACTGG	2 cut(s)	151, 777
BshFI	GGCC	2 cut(s)	47, 641
BsiHKAI	GWGCWC	1 cut(s)	891
BslFI	GGGAC	1 cut(s)	891
BslI	CCNNNNNNNGG	1 cut(s)	680
BsmFI	GGGAC	1 cut(s)	891
BsnI	GGCC	2 cut(s)	47, 641
Bsp1286I	GDGCHC	1 cut(s)	891
Bsp143I	GATC	4 cut(s)	109, 288, 1035, 1049
Bsp19I	CCATGG	1 cut(s)	1066
BspANI	GGCC	2 cut(s)	47, 641
BspCNI	CTCAG	2 cut(s)	36, 373
BspMI	ACCTGC	1 cut(s)	307
BsrI	ACTGG	2 cut(s)	151, 777
BssECI	CCNNGG	3 cut(s)	680, 749, 1066
BssMI	GATC	4 cut(s)	109, 288, 1035, 1049
BssNAI	GTATAC	1 cut(s)	1131
BssT1I	CCWWGG	1 cut(s)	1066
Bst1107I	GTATAC	1 cut(s)	1131
Bst2UI	CCWGG	1 cut(s)	681
Bst4CI	ACNGT	1 cut(s)	784
Bst6I	CTCTTC	1 cut(s)	1120
BstC8I	GCNNGC	1 cut(s)	399
BstDEI	CTNAG	2 cut(s)	23, 381
BstDSI	CCRYGG	2 cut(s)	749, 1066
BstEII	GGTNACC	1 cut(s)	663
BstF5I	GGATG	3 cut(s)	474, 622, 864
BstHHI	GCGC	1 cut(s)	903
BstKTI	GATC	4 cut(s)	112, 291, 1038, 1052
BstMBI	GATC	4 cut(s)	109, 288, 1035, 1049
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 398, 484
BstNI	CCWGG	1 cut(s)	681
BstNSI	RCATGY	1 cut(s)	758
BstPI	GGTNACC	1 cut(s)	663
BstSCI	CCNGG	1 cut(s)	679
BstV2I	GAAGAC	2 cut(s)	711, 946
BstXI	CCANNNNNNTGG	1 cut(s)	256
BstZ17I	GTATAC	1 cut(s)	1131
BsuI	GTATCC	1 cut(s)	305
BsuRI	GGCC	2 cut(s)	47, 641
BtgI	CCRYGG	2 cut(s)	749, 1066
BtsCI	GGATG	3 cut(s)	474, 622, 864
BtsIMutI	CAGTG	1 cut(s)	365
BveI	ACCTGC	1 cut(s)	307
Cac8I	GCNNGC	1 cut(s)	399
CfoI	GCGC	1 cut(s)	903
Cfr13I	GGNCC	2 cut(s)	45, 639
Csp6I	GTAC	4 cut(s)	246, 714, 834, 966
CspCI	CAANNNNNGTGG	2 cut(s)	88, 123
CviAII	CATG	4 cut(s)	86, 755, 824, 1067
CviQI	GTAC	4 cut(s)	246, 714, 834, 966
DdeI	CTNAG	2 cut(s)	23, 381
DpnI	GATC	4 cut(s)	111, 290, 1037, 1051
DpnII	GATC	4 cut(s)	109, 288, 1035, 1049
Eam1104I	CTCTTC	1 cut(s)	1120
EarI	CTCTTC	1 cut(s)	1120
Ecl136II	GAGCTC	1 cut(s)	889
Eco130I	CCWWGG	1 cut(s)	1066
Eco24I	GRGCYC	1 cut(s)	891
Eco32I	GATATC	1 cut(s)	18
Eco53kI	GAGCTC	1 cut(s)	889
Eco57I	CTGAAG	2 cut(s)	147, 389
Eco91I	GGTNACC	1 cut(s)	663
EcoICRI	GAGCTC	1 cut(s)	889
EcoO109I	RGGNCCY	1 cut(s)	45
EcoO65I	GGTNACC	1 cut(s)	663
EcoRII	CCWGG	1 cut(s)	679
EcoRV	GATATC	1 cut(s)	18
EcoT14I	CCWWGG	1 cut(s)	1066
EcoT38I	GRGCYC	1 cut(s)	891
ErhI	CCWWGG	1 cut(s)	1066
FaeI	CATG	4 cut(s)	89, 758, 827, 1070
FalI	AAGNNNNNCTT	2 cut(s)	493, 525
FaqI	GGGAC	1 cut(s)	891
FatI	CATG	4 cut(s)	85, 754, 823, 1066
FauNDI	CATATG	1 cut(s)	229
FbaI	TGATCA	1 cut(s)	109
FblI	GTMKAC	1 cut(s)	1130
FokI	GGATG	3 cut(s)	481, 629, 871
FriOI	GRGCYC	1 cut(s)	891
FspBI	CTAG	1 cut(s)	881
GlaI	GCGC	1 cut(s)	902
GsuI	CTGGAG	2 cut(s)	36, 663
HaeIII	GGCC	2 cut(s)	47, 641
HhaI	GCGC	1 cut(s)	903
Hin1II	CATG	4 cut(s)	89, 758, 827, 1070
Hin6I	GCGC	1 cut(s)	901
HinP1I	GCGC	1 cut(s)	901
HincII	GTYRAC	1 cut(s)	445
HindII	GTYRAC	1 cut(s)	445
HindIII	AAGCTT	1 cut(s)	485
HinfI	GANTC	8 cut(s)	362, 455, 949, 957, 1023, 1044, 1062, 1071
HphI	GGTGA	2 cut(s)	657, 1079
Hpy166II	GTNNAC	4 cut(s)	99, 445, 966, 1131
Hpy188I	TCNGA	4 cut(s)	166, 631, 852, 1049
Hpy188III	TCNNGA	4 cut(s)	275, 605, 1039, 1053
Hpy8I	GTNNAC	4 cut(s)	99, 445, 966, 1131
HpyAV	CCTTC	7 cut(s)	4, 55, 302, 364, 607, 849, 902
HpyCH4III	ACNGT	1 cut(s)	784
HpyCH4V	TGCA	2 cut(s)	302, 397
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 398, 484
HpyF3I	CTNAG	2 cut(s)	23, 381
Hsp92II	CATG	4 cut(s)	89, 758, 827, 1070
HspAI	GCGC	1 cut(s)	901
Ksp22I	TGATCA	1 cut(s)	109
Kzo9I	GATC	4 cut(s)	109, 288, 1035, 1049
LmnI	GCTCC	2 cut(s)	789, 894
LweI	GCATC	1 cut(s)	268
MaeI	CTAG	1 cut(s)	881
MaeIII	GTNAC	4 cut(s)	222, 259, 663, 1085
MalI	GATC	4 cut(s)	111, 290, 1037, 1051
MboI	GATC	4 cut(s)	109, 288, 1035, 1049
MhlI	GDGCHC	1 cut(s)	891
MmeI	TCCRAC	1 cut(s)	601
MnlI	CCTC	7 cut(s)	36, 58, 660, 683, 687, 716, 868
MroXI	GAANNNNTTC	1 cut(s)	361
MseI	TTAA	6 cut(s)	326, 410, 423, 686, 816, 1005
MslI	CAYNNNNRTG	1 cut(s)	120
MspR9I	CCNGG	1 cut(s)	681
MvaI	CCWGG	1 cut(s)	681
MwoI	GCNNNNNNNGC	3 cut(s)	53, 398, 484
NcoI	CCATGG	1 cut(s)	1066
NdeI	CATATG	1 cut(s)	229
NdeII	GATC	4 cut(s)	109, 288, 1035, 1049
NlaIII	CATG	4 cut(s)	89, 758, 827, 1070
NmeAIII	GCCGAG	1 cut(s)	397
NmuCI	GTSAC	2 cut(s)	663, 1085
NspI	RCATGY	1 cut(s)	758
PdmI	GAANNNNTTC	1 cut(s)	361
PfeI	GAWTC	8 cut(s)	362, 455, 949, 957, 1023, 1044, 1062, 1071
Psp124BI	GAGCTC	1 cut(s)	891
Psp6I	CCWGG	1 cut(s)	679
PspEI	GGTNACC	1 cut(s)	663
PspGI	CCWGG	1 cut(s)	679
PspPI	GGNCC	2 cut(s)	45, 639
RsaI	GTAC	4 cut(s)	247, 715, 835, 967
RsaNI	GTAC	4 cut(s)	246, 714, 834, 966
RseI	CAYNNNNRTG	1 cut(s)	120
SacI	GAGCTC	1 cut(s)	891
SaqAI	TTAA	6 cut(s)	326, 410, 423, 686, 816, 1005
Sau3AI	GATC	4 cut(s)	109, 288, 1035, 1049
Sau96I	GGNCC	2 cut(s)	45, 639
ScrFI	CCNGG	1 cut(s)	681
SduI	GDGCHC	1 cut(s)	891
SfaNI	GCATC	1 cut(s)	268
SmiMI	CAYNNNNRTG	1 cut(s)	120
SmlI	CTYRAG	1 cut(s)	709
SmoI	CTYRAG	1 cut(s)	709
SpeI	ACTAGT	1 cut(s)	880
SspI	AATATT	1 cut(s)	408
SspMI	CTAG	1 cut(s)	881
SstI	GAGCTC	1 cut(s)	891
StyD4I	CCNGG	1 cut(s)	679
StyI	CCWWGG	1 cut(s)	1066
TaaI	ACNGT	1 cut(s)	784
TaqI	TCGA	2 cut(s)	915, 1054
TfiI	GAWTC	8 cut(s)	362, 455, 949, 957, 1023, 1044, 1062, 1071
Tru1I	TTAA	6 cut(s)	326, 410, 423, 686, 816, 1005
Tru9I	TTAA	6 cut(s)	326, 410, 423, 686, 816, 1005
TscAI	CASTG	1 cut(s)	372
TseFI	GTSAC	2 cut(s)	663, 1085
Tsp45I	GTSAC	2 cut(s)	663, 1085
TspDTI	ATGAA	7 cut(s)	138, 183, 447, 452, 505, 884, 936
TspGWI	ACGGA	1 cut(s)	369
TspRI	CASTG	1 cut(s)	372
XapI	RAATTY	4 cut(s)	125, 429, 799, 818
XceI	RCATGY	1 cut(s)	758
XmiI	GTMKAC	1 cut(s)	1130
XmnI	GAANNNNTTC	1 cut(s)	361
XspI	CTAG	1 cut(s)	881

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.